Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G3686 Fragaria x ananassa HOM05D000090 ORTHO05D023184 2.5e-65 251.9 123 100.0
FAN18G2991 Fragaria x ananassa HOM05D000090 ORTHO05D023184 4.7e-64 247.7 123 98.4
FvH4_5g23771 Fragaria vesca HOM05D000090 ORTHO05D023184 1.9e-60 235.7 122 93.4
FAN04G2526 Fragaria x ananassa HOM05D000090 ORTHO05D023184 8.1e-48 193.7 106 89.6
RcHm_v2.0_Chr7g0213111 Rosa chinensis HOM05D000090 ORTHO05D006608 1.3e-42 176.4 123 71.5
FAN08G1520 Fragaria x ananassa HOM05D000090 ORTHO05D006608 5.6e-41 171.0 99 83.8
RcHm_v2.0_Chr7g0213141 Rosa chinensis HOM05D000090 ORTHO05D006608 1.6e-40 169.5 123 70.7
FAN04G1655 Fragaria x ananassa HOM05D000090 ORTHO05D006608 8.1e-40 167.2 128 68.0
FAN08G3695 Fragaria x ananassa HOM05D000090 ORTHO05D006608 2.5e-33 145.6 88 84.1
FvH4_5g23770 Fragaria vesca HOM05D000090 ORTHO05D006608 3.3e-33 145.2 88 84.1
FAN13G0208 Fragaria x ananassa HOM05D000090 ORTHO05D006608 3.3e-33 145.2 86 82.6
FAN13G0373 Fragaria x ananassa HOM05D000090 ORTHO05D006608 3.3e-33 145.2 86 82.6
FAN13G1821 Fragaria x ananassa HOM05D000090 ORTHO05D006608 3.3e-33 145.2 86 82.6
FAN18G1453 Fragaria x ananassa HOM05D000090 ORTHO05D006608 3.3e-33 145.2 88 84.1
FAN18G2432 Fragaria x ananassa HOM05D000090 ORTHO05D006608 3.3e-33 145.2 88 84.1
FAN18G3164 Fragaria x ananassa HOM05D000090 ORTHO05D006608 3.4e-30 135.2 114 63.2
FvH4_5g23790 Fragaria vesca HOM05D000090 ORTHO05D006608 5.8e-30 134.4 114 62.3
Hma1.2p1_1179F.1_g264440 Hydrangea macrophylla HOM05D000090 ORTHO05D006608 3.2e-28 128.6 116 58.6
RcHm_v2.0_Chr7g0213151 Rosa chinensis HOM05D000090 ORTHO05D006608 9.3e-28 127.1 125 56.8
Hma1.2p1_0979F.1_g243600 Hydrangea macrophylla HOM05D000090 ORTHO05D006608 3.5e-27 125.2 116 58.6
MD06G1013900 Malus domestica HOM05D000090 ORTHO05D006608 2.3e-26 122.5 87 69.0
RcHm_v2.0_Chr7g0213161 Rosa chinensis HOM05D000090 ORTHO05D006608 2.3e-26 122.5 109 59.6
Cfa012571 Carpinus fangiana HOM05D000090 ORTHO05D006608 1.5e-25 119.8 124 50.0
FAN18G2862 Fragaria x ananassa HOM05D000090 ORTHO05D006608 1.9e-25 119.4 66 80.3
FAN04G2800 Fragaria x ananassa HOM05D000090 ORTHO05D006608 2.5e-25 119.0 114 56.1
Atru.chr11.781 Acer truncatum HOM05D000090 ORTHO05D023184 3.3e-25 118.6 109 56.9
CANSAT25G1058 Cannabis sativa HOM05D000090 ORTHO05D006608 3.3e-25 118.6 124 50.0
Oeu044979.1 Olea europaea HOM05D000090 ORTHO05D006608 4.3e-25 118.2 106 59.4
PGR042G0593 Punica granatum HOM05D000090 ORTHO05D006608 1.3e-24 116.7 119 52.9
Manes.03G111200 Manihot esculenta HOM05D000090 ORTHO05D006608 3.7e-24 115.2 127 50.4
Nitab4.5_0009295g0010 Nicotiana tabacum HOM05D000090 ORTHO05D006608 3.7e-24 115.2 111 55.9
Lj7P162T18 Lonicera japonica HOM05D000090 ORTHO05D006608 6.3e-24 114.4 108 51.9
Ca_25143_v3 Cicer arietinum L. HOM05D000090 ORTHO05D006608 8.2e-24 114.0 112 50.9
Potri.001G133000 Populus trichocarpa HOM05D000090 ORTHO05D006608 8.2e-24 114.0 125 50.4
Psat2g141040 Pisum sativum HOM05D000090 ORTHO05D006608 1.1e-23 113.6 113 49.6
Cc08_g04350 Coffea canephora HOM05D000090 ORTHO05D006608 1.4e-23 113.2 109 54.1
Peaxi162Scf00408g00053 Petunia axillaris HOM05D000090 ORTHO05D006608 1.4e-23 113.2 117 52.1
COL.COLO4_16877 Corchorus olitorius HOM05D000090 ORTHO05D006608 5.3e-23 111.3 129 46.5
Prupe.5G022600 Prunus persica HOM05D000090 ORTHO05D006608 5.3e-23 111.3 72 70.8
CiPaw.11G102000 Carya illinoinensis HOM05D000090 ORTHO05D006608 6.9e-23 110.9 90 60.0
TWI32G0266 Tripterygium wilfordii HOM05D000090 ORTHO05D006608 6.9e-23 110.9 131 48.9
Potri.003G100500 Populus trichocarpa HOM05D000090 ORTHO05D006608 1.5e-22 109.8 103 59.2
Lj2g0008236 Lotus japonicus HOM05D000090 ORTHO05D006608 2.0e-22 109.4 109 52.3
Ciclev10003441m.g Citrus clementina HOM05D000090 ORTHO05D006608 3.4e-22 108.6 113 49.6
Duzib205G2000 Durio zibethinus HOM05D000090 ORTHO05D006608 3.4e-22 108.6 151 41.1
Eucgr.E01245 Eucalyptus grandis HOM05D000090 ORTHO05D006608 3.4e-22 108.6 124 48.4
Sabra01G0102600 Salix brachista HOM05D000090 ORTHO05D006608 4.5e-22 108.2 143 44.1
PGR031G3566 Punica granatum HOM05D000090 ORTHO05D006608 7.6e-22 107.5 110 50.9
CSS0039619 Camellia sinensis var. sinensis HOM05D000090 ORTHO05D006608 1.3e-21 106.7 128 45.3
Haze_08094 Corylus avellana HOM05D000090 ORTHO05D006608 1.3e-21 106.7 115 48.7
arahy.Tifrunner.gnm1.ann1.J9YHEP Arachis hypogaea HOM05D000090 ORTHO05D006608 2.2e-21 105.9 116 47.4
arahy.Tifrunner.gnm1.ann1.Q44N8G Arachis hypogaea HOM05D000090 ORTHO05D006608 2.2e-21 105.9 116 47.4
Thecc.03G315200 Theobroma cacao HOM05D000090 ORTHO05D006608 3.8e-21 105.1 151 39.7
Dinv29055 Davidia involucrata HOM05D000090 ORTHO05D006608 5.0e-21 104.8 89 57.3
Haze_08093 Corylus avellana HOM05D000090 ORTHO05D006608 8.5e-21 104.0 157 39.5
Eucgr.E01244 Eucalyptus grandis HOM05D000090 ORTHO05D006608 8.5e-21 104.0 109 50.5
Atru.chr6.1588 Acer truncatum HOM05D000090 ORTHO05D006608 1.4e-20 103.2 122 46.7
CiPaw.12G070800 Carya illinoinensis HOM05D000090 ORTHO05D006608 1.4e-20 103.2 101 53.5
Potri.001G133100 Populus trichocarpa HOM05D000090 ORTHO05D006608 2.5e-20 102.4 105 50.5
Eucgr.E01246 Eucalyptus grandis HOM05D000090 ORTHO05D006608 5.5e-20 101.3 119 47.1
TPR.G29134 Trifolium pratense HOM05D000090 ORTHO05D006608 7.2e-20 100.9 112 48.2
QL12p001014 Quercus lobata HOM05D000090 ORTHO05D006608 1.6e-19 99.8 120 48.3
SalBow8G1620 Salvia bowleyana HOM05D000090 ORTHO05D006608 2.7e-19 99.0 109 50.5
Actinidia14755 Actinidia chinensis HOM05D000090 ORTHO05D006608 4.6e-19 98.2 94 54.3
Nn3g21158 Nelumbo nucifera HOM05D000090 ORTHO05D006608 4.6e-19 98.2 110 50.9
Atru.chr6.1584 Acer truncatum HOM05D000090 ORTHO05D006608 7.9e-19 97.4 157 39.5
Gohir.A12G204200 Gossypium hirsutum HOM05D000090 ORTHO05D006608 7.9e-19 97.4 125 43.2
CSS0028084 Camellia sinensis var. sinensis HOM05D000090 ORTHO05D006608 2.3e-18 95.9 106 47.2
Medtr5g027210 Medicago truncatula HOM05D000090 ORTHO05D006608 3.0e-18 95.5 112 46.4
Cfa012570 Carpinus fangiana HOM05D000090 ORTHO05D006608 3.9e-18 95.1 113 46.9
Lj8P325T15 Lonicera japonica HOM05D000090 ORTHO05D006608 3.9e-18 95.1 107 47.7
Atru.chr13.1189 Acer truncatum HOM05D000090 ORTHO05D006608 5.1e-18 94.7 107 47.7
Haze_08095 Corylus avellana HOM05D000090 ORTHO05D006608 6.7e-18 94.4 113 46.9
Gohir.D12G206600 Gossypium hirsutum HOM05D000090 ORTHO05D006608 6.7e-18 94.4 125 42.4
SalBow8G3106 Salvia bowleyana HOM05D000090 ORTHO05D006608 6.7e-18 94.4 87 56.3
Lju2073C0T3 Lonicera japonica HOM05D000090 ORTHO05D006608 8.8e-18 94.0 107 46.7
Gorai.008G221800 Gossypium raimondii HOM05D000090 ORTHO05D006608 1.9e-17 92.8 125 41.6
VMungo1215G2871 Vigna mungo HOM05D000090 ORTHO05D006608 1.9e-17 92.8 90 56.7
Thecc.03G315100 Theobroma cacao HOM05D000090 ORTHO05D006608 3.3e-17 92.0 107 46.7
Ah.12g055910 Amaranthus hybridus HOM05D000090 ORTHO05D006608 5.7e-17 91.3 68 61.8
FvH4_7g07510 Fragaria vesca HOM05D000090 ORTHO05D006608 5.7e-17 91.3 116 43.1
FAN03G2338 Fragaria x ananassa HOM05D000090 ORTHO05D006608 5.7e-17 91.3 116 43.1
Dinv29056 Davidia involucrata HOM05D000090 ORTHO05D006608 7.4e-17 90.9 115 45.2
Eucgr.D02610 Eucalyptus grandis HOM05D000090 ORTHO05D006608 7.4e-17 90.9 113 44.2
Phvul.002G132100 Phaseolus vulgaris HOM05D000090 ORTHO05D006608 1.3e-16 90.1 87 56.3
Sc22g0001030 Simmondsia chinensis HOM05D000090 ORTHO05D006608 1.3e-16 90.1 83 54.2
Dinv29054 Davidia involucrata HOM05D000090 ORTHO05D006608 1.7e-16 89.7 103 46.6
FAN06G5117 Fragaria x ananassa HOM05D000090 ORTHO05D006608 1.7e-16 89.7 120 41.7
Prupe.2G101800 Prunus persica HOM05D000090 ORTHO05D006608 2.2e-16 89.4 109 42.2
RcHm_v2.0_Chr1g0339341 Rosa chinensis HOM05D000090 ORTHO05D006608 4.8e-16 88.2 125 40.0
vmacro22925 Vaccinium macrocarpon HOM05D000090 ORTHO05D006608 6.3e-16 87.8 144 39.6
vmacro03035 Vaccinium macrocarpon HOM05D000090 ORTHO05D006608 8.2e-16 87.4 107 43.0
CiPaw.11G101900 Carya illinoinensis HOM05D000090 ORTHO05D006608 1.1e-15 87.0 108 44.4
Migut.E01338 Erythranthe guttata HOM05D000090 ORTHO05D006608 1.1e-15 87.0 111 44.1
Haze_08092 Corylus avellana HOM05D000090 ORTHO05D006608 1.4e-15 86.7 109 45.0
RcHm_v2.0_Chr7g0213181 Rosa chinensis HOM05D000090 ORTHO05D006608 3.1e-15 85.5 105 44.8
FvH4_5g23800 Fragaria vesca HOM05D000090 ORTHO05D006608 5.3e-15 84.7 105 44.8
Lsat_1_v5_gn_3_21200 Lactuca sativa HOM05D000090 ORTHO05D006608 6.9e-15 84.3 121 46.3
DCAR_028246 Daucus carota HOM05D000090 ORTHO05D006608 9.1e-15 84.0 69 50.7
FAN13G1603 Fragaria x ananassa HOM05D000090 ORTHO05D006608 2.0e-14 82.8 105 45.7
FAN08G0753 Fragaria x ananassa HOM05D000090 ORTHO05D006608 4.5e-14 81.6 105 44.8
Ciclev10003109m.g Citrus clementina HOM05D000090 ORTHO05D006608 5.9e-14 81.3 100 45.0
QL12p001009 Quercus lobata HOM05D000090 ORTHO05D006608 1.0e-13 80.5 115 41.7
TAR629G2687 Trochodendron aralioides HOM05D000090 ORTHO05D006608 1.0e-13 80.5 109 44.0
Rhsim07G0137100 Rhododendron simsii HOM05D000090 ORTHO05D006608 2.9e-13 79.0 87 48.3
QL02p064114 Quercus lobata HOM05D000090 ORTHO05D006608 5.0e-13 78.2 106 43.4
Cfa012572 Carpinus fangiana HOM05D000090 ORTHO05D006608 6.5e-13 77.8 108 41.7
Nitab4.5_0025368g0010 Nicotiana tabacum HOM05D000090 ORTHO05D006608 6.5e-13 77.8 108 42.6
ECA246G0050 Erigeron canadensis HOM05D000090 ORTHO05D006608 1.1e-12 77.0 108 42.6
PGR042G3572 Punica granatum HOM05D000090 ORTHO05D006608 1.1e-12 77.0 107 41.1
PGR042G3576 Punica granatum HOM05D000090 ORTHO05D006608 1.4e-12 76.6 112 40.2
Peaxi162Scf00064g00912 Petunia axillaris HOM05D000090 ORTHO05D006608 1.9e-12 76.3 114 40.4
FAN13G3041 Fragaria x ananassa HOM05D000090 ORTHO05D006608 1.2e-11 73.6 39 76.9
Actinidia18148 Actinidia chinensis HOM05D000090 ORTHO05D006608 2.1e-11 72.8 105 38.1
Sopen12g031970 Solanum pennellii HOM05D000090 ORTHO05D006608 2.1e-11 72.8 99 41.4
Solyc12g096080.2 Solanum lycopersicum HOM05D000090 ORTHO05D006608 2.7e-11 72.4 106 39.6
CSS0033555 Camellia sinensis var. sinensis HOM05D000090 ORTHO05D006608 3.6e-11 72.0 77 49.4
Oeu046796.1 Olea europaea HOM05D000090 ORTHO05D006608 6.1e-11 71.2 99 40.4
Nitab4.5_0001033g0020 Nicotiana tabacum HOM05D000090 ORTHO05D006608 7.9e-11 70.9 109 41.3
HanXRQChr17g0537361 Helianthus annuus HOM05D000090 ORTHO05D006608 1.8e-10 69.7 103 46.6
SEGI_28094 Sequoiadendron giganteum HOM05D000090 ORTHO05D006608 6.7e-10 67.8 88 45.5
ATR0829G015 Amborella trichopoda HOM05D000090 ORTHO05D006608 8.8e-10 67.4 93 46.2
SEGI_07974 Sequoiadendron giganteum HOM05D000090 ORTHO05D006608 8.8e-10 67.4 89 48.3
PGSC0003DMG400029293 Solanum tuberosum HOM05D000090 ORTHO05D006608 1.1e-09 67.0 106 37.7
Nitab4.5_0000943g0110 Nicotiana tabacum HOM05D000090 ORTHO05D006608 1.5e-09 66.6 108 37.0
CDE11G0618 Ceratophyllum demersum HOM05D000090 ORTHO05D006608 2.6e-09 65.9 89 42.7
Peaxi162Scf00064g00205 Petunia axillaris HOM05D000090 ORTHO05D006608 5.7e-09 64.7 96 40.6
Aqoxy1G01813 Aquilegia oxysepala HOM05D000090 ORTHO05D006608 8.2e-08 60.8 109 36.7
Ciclev10003233m.g Citrus clementina HOM05D000090 ORTHO05D006608 3.1e-07 58.9 105 34.3


User provided reference genes

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