Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G3652 Fragaria x ananassa HOM05D006104 ORTHO05D008303 3.0e-232 808.1 412 100.0
FvH4_5g39720 Fragaria vesca HOM05D006104 ORTHO05D008303 6.6e-227 790.4 412 98.1
FAN08G3450 Fragaria x ananassa HOM05D006104 ORTHO05D008303 1.7e-219 765.8 491 83.1
RcHm_v2.0_Chr7g0242021 Rosa chinensis HOM05D006104 ORTHO05D008303 1.2e-196 689.9 431 85.4
FAN04G1807 Fragaria x ananassa HOM05D006104 ORTHO05D008303 3.3e-194 681.8 510 73.1
MD09G1187600 Malus domestica HOM05D006104 ORTHO05D008303 1.2e-159 567.0 350 83.7
CANSAT78G2105 Cannabis sativa HOM05D006104 ORTHO05D008303 4.8e-145 518.5 343 77.3
Cfa008019 Carpinus fangiana HOM05D006104 ORTHO05D008303 3.5e-143 512.3 353 75.4
ClCG01G008400 Citrullus lanatus HOM05D006104 ORTHO05D008303 4.5e-143 511.9 380 71.3
Haze_14041 Corylus avellana HOM05D006104 ORTHO05D008303 2.9e-142 509.2 351 74.9
Gorai.008G055000 Gossypium raimondii HOM05D006104 ORTHO05D008303 2.5e-141 506.1 402 68.2
Rhsim10G0186700 Rhododendron simsii HOM05D006104 ORTHO05D008303 7.2e-141 504.6 376 70.2
QL02p055508 Quercus lobata HOM05D006104 ORTHO05D008303 2.1e-140 503.1 348 74.7
Nitab4.5_0002297g0090 Nicotiana tabacum HOM05D006104 ORTHO05D008303 2.7e-140 502.7 344 75.6
Gohir.D12G051700 Gossypium hirsutum HOM05D006104 ORTHO05D008303 3.6e-140 502.3 402 67.7
CiPaw.03G009900 Carya illinoinensis HOM05D006104 ORTHO05D008303 4.0e-139 498.8 356 74.4
Sopen02g011830 Solanum pennellii HOM05D006104 ORTHO05D008303 4.0e-139 498.8 418 64.8
PGSC0003DMG400021455 Solanum tuberosum HOM05D006104 ORTHO05D008303 4.0e-139 498.8 432 63.4
Nitab4.5_0008083g0020 Nicotiana tabacum HOM05D006104 ORTHO05D008303 6.7e-139 498.0 350 73.4
Solyc02g036470.4 Solanum lycopersicum HOM05D006104 ORTHO05D008303 8.8e-139 497.7 380 68.9
arahy.Tifrunner.gnm1.ann1.W9ZMNH Arachis hypogaea HOM05D006104 ORTHO05D008303 2.0e-138 496.5 424 64.9
arahy.Tifrunner.gnm1.ann1.B0P6V2 Arachis hypogaea HOM05D006104 ORTHO05D008303 2.6e-138 496.1 434 63.8
TWI74G1645 Tripterygium wilfordii HOM05D006104 ORTHO05D008303 4.4e-138 495.4 403 66.7
Potri.012G145300 Populus trichocarpa HOM05D006104 ORTHO05D008303 1.3e-137 493.8 338 75.1
Thecc.04G056600 Theobroma cacao HOM05D006104 ORTHO05D008303 1.3e-137 493.8 375 70.7
Sp3g01720 Schrenkiella parvula HOM05D006104 ORTHO05D008303 2.8e-137 492.7 416 64.4
Dinv19095 Davidia involucrata HOM05D006104 ORTHO05D008303 3.7e-137 492.3 340 73.8
Glyma.18G047900 Glycine max HOM05D006104 ORTHO05D008303 4.8e-137 491.9 342 74.9
PSO063G5766 Papaver somniferum HOM05D006104 ORTHO05D008303 4.8e-137 491.9 360 70.3
Ciclev10011871m.g Citrus clementina HOM05D006104 ORTHO05D008303 8.2e-137 491.1 415 66.5
CARHR076690 Cardamine hirsuta HOM05D006104 ORTHO05D008303 1.8e-136 490.0 341 73.6
Glyma.11G202900 Glycine max HOM05D006104 ORTHO05D008303 3.1e-136 489.2 337 75.1
Carub.0003s0179 Capsella rubella HOM05D006104 ORTHO05D008303 7.0e-136 488.0 341 73.3
TAR371G0041 Trochodendron aralioides HOM05D006104 ORTHO05D008303 9.1e-136 487.6 296 82.1
Thhalv10020801m.g Eutrema salsugineum HOM05D006104 ORTHO05D008303 1.6e-135 486.9 341 74.5
Peaxi162Scf00784g00028 Petunia axillaris HOM05D006104 ORTHO05D008303 1.6e-135 486.9 341 73.3
Cpa.g.sc108.21 Carica papaya HOM05D006104 ORTHO05D008303 2.0e-135 486.5 330 73.9
Lsat_1_v5_gn_8_114940 Lactuca sativa HOM05D006104 ORTHO05D008303 2.6e-135 486.1 356 68.8
SGA_v2.0_scaffold199G41251 Striga asiatica HOM05D006104 ORTHO05D008303 4.5e-135 485.3 378 66.7
Duzib138G0961 Durio zibethinus HOM05D006104 ORTHO05D008303 7.7e-135 484.6 327 77.1
DCAR_003391 Daucus carota HOM05D006104 ORTHO05D008303 1.0e-134 484.2 310 78.7
Aa31LG5G13170 Aethionema arabicum HOM05D006104 ORTHO05D008303 1.3e-134 483.8 342 72.8
Ca_15100_v3 Cicer arietinum L. HOM05D006104 ORTHO05D008303 1.3e-134 483.8 341 72.7
Lj6g0001971 Lotus japonicus HOM05D006104 ORTHO05D008303 3.8e-134 482.3 354 70.9
THA.LOC104820927 Tarenaya hassleriana HOM05D006104 ORTHO05D008303 3.8e-134 482.3 353 72.8
Migut.K01201 Erythranthe guttata HOM05D006104 ORTHO05D008303 5.0e-134 481.9 422 61.8
BNapus_Darmor_BZH_scaffold_122p00170 Brassica napus HOM05D006104 ORTHO05D008303 8.5e-134 481.1 412 62.4
AL3G12080 Arabidopsis lyrata HOM05D006104 ORTHO05D008303 1.5e-133 480.3 324 75.0
Hund22221 Selenicereus undatus HOM05D006104 ORTHO05D008303 1.5e-133 480.3 364 67.9
BolC1t05884H Brassica oleracea HOM05D006104 ORTHO05D008303 4.2e-133 478.8 413 62.5
BraA01t04624Z Brassica rapa HOM05D006104 ORTHO05D008303 2.1e-132 476.5 390 65.1
Ah.06g191390 Amaranthus hybridus HOM05D006104 ORTHO05D008303 3.6e-132 475.7 344 70.9
AUR62037537 Chenopodium quinoa HOM05D006104 ORTHO05D008303 8.0e-132 474.6 338 69.8
HanXRQChr15g0486461 Helianthus annuus HOM05D006104 ORTHO05D008303 8.0e-132 474.6 344 68.6
Atru.chr1.2189 Acer truncatum HOM05D006104 ORTHO05D008303 1.4e-131 473.8 295 81.4
PGR042G1876 Punica granatum HOM05D006104 ORTHO05D008303 1.4e-131 473.8 353 70.8
ECA232G1605 Erigeron canadensis HOM05D006104 ORTHO05D008303 2.3e-131 473.0 373 64.3
AT3G02690 Arabidopsis thaliana HOM05D006104 ORTHO05D008303 2.6e-130 469.5 324 73.8
EL10Ac1g01448 Beta vulgaris HOM05D006104 ORTHO05D008303 2.6e-130 469.5 337 70.0
CDE04G1404 Ceratophyllum demersum HOM05D006104 ORTHO05D008303 5.7e-130 468.4 351 67.2
AUR62035547 Chenopodium quinoa HOM05D006104 ORTHO05D008303 7.5e-130 468.0 342 69.3
MBI06_g37978_MAGBIO Magnolia biondii HOM05D006104 ORTHO05D008303 9.8e-130 467.6 352 68.8
MSTRG.15618 Avicennia marina HOM05D006104 ORTHO05D008303 2.2e-129 466.5 341 70.4
Medtr3g063250 Medicago truncatula HOM05D006104 ORTHO05D008303 2.2e-129 466.5 387 64.9
Oeu058858.1 Olea europaea HOM05D006104 ORTHO05D008303 2.8e-129 466.1 299 75.9
Sabra12G0109100 Salix brachista HOM05D006104 ORTHO05D008303 3.7e-129 465.7 386 65.3
Eucgr.J01650 Eucalyptus grandis HOM05D006104 ORTHO05D008303 4.1e-128 462.2 292 78.4
Nn4g25028 Nelumbo nucifera HOM05D006104 ORTHO05D008303 1.6e-127 460.3 434 59.2
MELO3C025108.2 Cucumis melo HOM05D006104 ORTHO05D008303 4.5e-127 458.8 526 52.1
Zm00001eb044830 Zea mays HOM05D006104 ORTHO05D008303 5.9e-127 458.4 351 66.7
ATR0124G053 Amborella trichopoda HOM05D006104 ORTHO05D008303 1.7e-126 456.8 348 66.4
Gohir.A12G053200 Gossypium hirsutum HOM05D006104 ORTHO05D008303 2.2e-126 456.4 325 73.8
Medtr3g063240 Medicago truncatula HOM05D006104 ORTHO05D008303 2.2e-126 456.4 317 72.9
Phvul.006G083500 Phaseolus vulgaris HOM05D006104 ORTHO05D008303 6.5e-126 454.9 346 68.8
CAN.G304.9 Capsicum annuum HOM05D006104 ORTHO05D008303 1.6e-124 450.3 339 69.3
Lalb_Chr18g0053941 Lupinus albus HOM05D006104 ORTHO05D008303 6.1e-124 448.4 342 68.4
HPP92_022205 Vanilla planifolia HOM05D006104 ORTHO05D008303 1.8e-123 446.8 347 67.1
Actinidia32997 Actinidia chinensis HOM05D006104 ORTHO05D008303 4.0e-123 445.7 414 60.4
VMungo0540G0919 Vigna mungo HOM05D006104 ORTHO05D008303 3.4e-122 442.6 340 67.6
GSVIVG01033198001 Vitis vinifera HOM05D006104 ORTHO05D008303 3.4e-122 442.6 274 81.8
Lj4A249G56 Lonicera japonica HOM05D006104 ORTHO05D008303 5.7e-122 441.8 269 80.3
Aqoxy3G04351 Aquilegia oxysepala HOM05D006104 ORTHO05D008303 1.6e-119 433.7 353 64.6
Cc07_g12610 Coffea canephora HOM05D006104 ORTHO05D008303 2.0e-119 433.3 276 76.4
AagrBONN_evm.TU.Sc2ySwM_368.1984 Anthoceros agrestis HOM05D006104 ORTHO05D008303 1.7e-118 430.3 347 63.7
Sc09g0004650 Simmondsia chinensis HOM05D006104 ORTHO05D008303 6.4e-113 411.8 344 62.5
unitig_748.g7253 Utricularia gibba HOM05D006104 ORTHO05D008303 1.8e-112 410.2 355 62.8
BNapus_Darmor_BZH_scaffold_99p00200 Brassica napus HOM05D006104 ORTHO05D008303 9.2e-112 407.9 261 78.5
Pp3c19_6070 Physcomitrium patens HOM05D006104 ORTHO05D008303 1.2e-108 397.5 382 54.5
Mapoly0068s0059 Marchantia polymorpha HOM05D006104 ORTHO05D008303 1.1e-104 384.4 314 62.7
Prupe.8G267800 Prunus persica HOM05D006104 ORTHO05D008303 1.4e-104 384.0 338 67.2
vmacro20444 Vaccinium macrocarpon HOM05D006104 ORTHO05D008303 8.6e-102 374.8 370 56.5
SMO364G0667 Selaginella moellendorffii HOM05D006104 ORTHO05D008303 5.6e-101 372.1 370 55.1
CSS0044834 Camellia sinensis var. sinensis HOM05D006104 ORTHO05D008303 9.5e-101 371.3 292 66.4
SalBow5G0256 Salvia bowleyana HOM05D006104 ORTHO05D008303 1.6e-100 370.5 392 54.6
EL10Ac4g08870 Beta vulgaris HOM05D006104 ORTHO05D008303 2.1e-100 370.2 240 76.7
Hma1.2p1_0085F.1_g043890 Hydrangea macrophylla HOM05D006104 ORTHO05D008303 1.9e-96 357.1 286 65.7
MCO16G393 Micromonas commoda HOM05D006104 ORTHO05D008303 2.1e-95 353.6 354 55.1
CBR_g22386 Chara braunii HOM05D006104 ORTHO05D008303 6.6e-94 348.6 386 52.1
CsaV3_5G024350 Cucumis sativus L. HOM05D006104 ORTHO05D008303 4.3e-93 345.9 271 67.9
Sed0008277 Sechium edule HOM05D006104 ORTHO05D008303 8.9e-91 338.2 259 70.3
Manes.01G125800 Manihot esculenta HOM05D006104 ORTHO05D008303 4.1e-88 329.3 263 67.7
COL.COLO4_13439 Corchorus olitorius HOM05D006104 ORTHO05D008303 1.2e-87 327.8 284 63.7
Pp3c7_24690 Physcomitrium patens HOM05D006104 ORTHO05D008303 5.2e-83 312.4 313 51.1
Cre12.g507950 Chlamydomonas reinhardtii HOM05D006104 ORTHO05D008303 8.7e-78 295.0 370 47.3
PRCOL_00000403 Prasinoderma coloniale HOM05D006104 ORTHO05D008303 1.1e-77 294.7 295 56.3
SEGI_11411 Sequoiadendron giganteum HOM05D006104 ORTHO05D008303 1.4e-75 287.7 260 60.0
TPR.G37386 Trifolium pratense HOM05D006104 ORTHO05D008303 7.6e-74 282.0 197 73.1
QL02p056562 Quercus lobata HOM05D006104 ORTHO05D008303 6.6e-70 268.9 159 81.1
Os10g0493900 Oryza sativa ssp. japonica HOM05D006104 ORTHO05D008303 5.3e-67 259.2 159 76.7
TPR.G14061 Trifolium pratense HOM05D006104 ORTHO05D008303 6.2e-60 235.7 198 64.6
SEGI_16808 Sequoiadendron giganteum HOM05D006104 ORTHO05D008303 8.4e-57 225.3 144 74.3
arahy.Tifrunner.gnm1.ann1.4P08NV Arachis hypogaea HOM05D006104 ORTHO05D008303 1.4e-56 224.6 226 58.4
Psat5g144680 Pisum sativum HOM05D006104 ORTHO05D008303 2.8e-44 183.7 199 51.8
arahy.Tifrunner.gnm1.ann1.2Q0DPQ Arachis hypogaea HOM05D006104 ORTHO05D008303 2.3e-30 137.5 114 64.0
arahy.Tifrunner.gnm1.ann1.LG1UYC Arachis hypogaea HOM05D006104 ORTHO05D008303 9.7e-29 132.1 132 56.1
BraA02t04668Z Brassica rapa HOM05D006104 ORTHO05D008303 7.0e-27 125.9 136 55.1
Psat5g144720 Pisum sativum HOM05D006104 ORTHO05D008303 3.2e-24 117.1 105 58.1
Psat0s2701g0160 Pisum sativum HOM05D006104 ORTHO05D000113 1.2e-23 115.2 94 60.6
arahy.Tifrunner.gnm1.ann1.12AD17 Arachis hypogaea HOM05D000052 ORTHO05D000046 2.8e-20 104.0 92 62.0
Psat7g173760 Pisum sativum HOM05D006104 ORTHO05D008303 8.5e-17 92.4 70 65.7
Cpa.g.c43318 Carica papaya HOM05D006104 ORTHO05D117575 2.1e-15 87.8 256 28.5
Psat5g203840 Pisum sativum HOM05D006104 ORTHO05D324349 6.1e-15 86.3 152 44.1
Psat4g208480 Pisum sativum HOM05D006104 ORTHO05D008303 4.5e-10 70.1 134 39.6
Pp3s42_60 Physcomitrium patens HOM05D000182 ORTHO05D011688 5.0e-09 66.6 273 24.9
Psat4g208520 Pisum sativum HOM05D006104 ORTHO05D008303 9.5e-08 62.4 63 55.6


User provided reference genes

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