Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G3620 Fragaria x ananassa HOM05D006640 ORTHO05D008078 3.8e-103 378.3 200 100.0
FvH4_5g25620 Fragaria vesca HOM05D006640 ORTHO05D008078 5.5e-102 374.4 200 99.0
FAN04G1358 Fragaria x ananassa HOM05D006640 ORTHO05D008078 9.3e-102 373.6 200 98.5
FAN08G2005 Fragaria x ananassa HOM05D006640 ORTHO05D008078 7.1e-94 347.4 185 98.9
RcHm_v2.0_Chr7g0215911 Rosa chinensis HOM05D006640 ORTHO05D008078 4.6e-93 344.7 200 91.0
FAN13G1910 Fragaria x ananassa HOM05D006640 ORTHO05D008078 5.0e-87 324.7 232 78.9
MD15G1440200 Malus domestica HOM05D006640 ORTHO05D008078 2.2e-82 309.3 201 81.1
Prupe.5G009200 Prunus persica HOM05D006640 ORTHO05D008078 1.2e-80 303.5 201 80.6
GSVIVG01013394001 Vitis vinifera HOM05D006640 ORTHO05D008078 4.5e-72 275.0 200 72.5
Atru.chr3.582 Acer truncatum HOM05D006640 ORTHO05D008078 5.9e-72 274.6 200 71.5
CiPaw.07G136100 Carya illinoinensis HOM05D006640 ORTHO05D008078 1.1e-70 270.4 200 72.5
QL02p015123 Quercus lobata HOM05D006640 ORTHO05D008078 1.9e-70 269.6 199 72.4
CSS0000785 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 2.1e-69 266.2 200 68.5
Potri.005G253200 Populus trichocarpa HOM05D006640 ORTHO05D008078 1.4e-68 263.5 202 68.3
Haze_19181 Corylus avellana HOM05D006640 ORTHO05D008078 2.3e-68 262.7 200 69.0
Eucgr.F01788 Eucalyptus grandis HOM05D006640 ORTHO05D008078 2.3e-68 262.7 200 67.5
CAN.G1138.9 Capsicum annuum HOM05D006640 ORTHO05D008078 3.9e-68 261.9 201 69.7
Ciclev10002549m.g Citrus clementina HOM05D006640 ORTHO05D008078 6.7e-68 261.2 200 66.5
Manes.13G069100 Manihot esculenta HOM05D006640 ORTHO05D008078 4.4e-67 258.5 200 68.0
Lj6g0027905 Lotus japonicus HOM05D006640 ORTHO05D008078 8.2e-66 254.2 198 65.7
Solyc04g082560.4 Solanum lycopersicum HOM05D001842 ORTHO05D001849 3.1e-65 252.3 201 68.2
Solyc08g069130.1 Solanum lycopersicum HOM05D006640 ORTHO05D008078 3.1e-65 252.3 201 68.2
Thecc.03G029100 Theobroma cacao HOM05D006640 ORTHO05D008078 7.0e-65 251.1 200 65.5
TAR625G0363 Trochodendron aralioides HOM05D006640 ORTHO05D008078 7.0e-65 251.1 200 65.0
Sopen04g036190 Solanum pennellii HOM05D006640 ORTHO05D008078 9.1e-65 250.8 201 67.2
EL10Ac3g05131 Beta vulgaris HOM05D006640 ORTHO05D008078 2.0e-64 249.6 200 63.5
Cc10_g14910 Coffea canephora HOM05D006640 ORTHO05D008078 1.7e-63 246.5 199 66.8
Lalb_Chr01g0007731 Lupinus albus HOM05D006640 ORTHO05D008078 1.7e-63 246.5 198 63.1
Migut.E01492 Erythranthe guttata HOM05D006640 ORTHO05D008078 5.0e-63 245.0 199 65.3
Hund21079 Selenicereus undatus HOM05D006640 ORTHO05D008078 8.5e-63 244.2 200 65.0
Oeu011315.3 Olea europaea HOM05D006640 ORTHO05D008078 3.2e-62 242.3 208 63.5
MD08G1245100 Malus domestica HOM05D006640 ORTHO05D008078 4.2e-62 241.9 164 79.9
Cfa010319 Carpinus fangiana HOM05D006640 ORTHO05D008078 7.2e-62 241.1 185 68.6
Gorai.006G062900 Gossypium raimondii HOM05D006640 ORTHO05D008078 6.1e-61 238.0 206 60.2
Cfa020797 Carpinus fangiana HOM05D006640 ORTHO05D008078 8.0e-61 237.7 185 68.6
Glyma.08G337400 Glycine max HOM05D001876 ORTHO05D002002 1.8e-60 236.5 198 61.1
Peaxi162Scf00680g00119 Petunia axillaris HOM05D006640 ORTHO05D008078 1.8e-60 236.5 201 63.2
vmacro05542 Vaccinium macrocarpon HOM05D006640 ORTHO05D008078 5.2e-60 235.0 192 64.1
MSTRG.990 Avicennia marina HOM05D006640 ORTHO05D008078 2.6e-59 232.6 199 62.8
Gohir.A09G046800 Gossypium hirsutum HOM05D006640 ORTHO05D008078 4.4e-59 231.9 206 58.7
Medtr1g103240 Medicago truncatula HOM05D006640 ORTHO05D008078 7.5e-59 231.1 200 61.0
CANSAT54G1336 Cannabis sativa HOM05D006640 ORTHO05D008078 1.3e-58 230.3 197 62.9
Ca_19713_v3 Cicer arietinum L. HOM05D006640 ORTHO05D008078 1.7e-58 229.9 239 54.8
SalBow1G3286 Salvia bowleyana HOM05D006640 ORTHO05D008078 2.2e-58 229.6 199 59.8
Psat7g226480 Pisum sativum HOM05D006640 ORTHO05D008078 4.8e-58 228.4 201 61.2
PGR083G0938 Punica granatum HOM05D006640 ORTHO05D008078 4.8e-58 228.4 200 61.0
SalBow7G4342 Salvia bowleyana HOM05D006640 ORTHO05D008078 6.3e-58 228.0 199 59.8
TPR.G34155 Trifolium pratense HOM05D006640 ORTHO05D008078 1.4e-57 226.9 201 61.2
HanXRQChr05g0147651 Helianthus annuus HOM05D006640 ORTHO05D008078 2.4e-57 226.1 200 58.0
Glyma.08G337600 Glycine max HOM05D003402 ORTHO05D003939 4.1e-57 225.3 185 62.7
Medtr4g032370 Medicago truncatula HOM05D006640 ORTHO05D008078 5.3e-57 224.9 199 61.3
COL.COLO4_22727 Corchorus olitorius HOM05D006640 ORTHO05D008078 9.1e-57 224.2 186 61.8
SGA_v2.0_scaffold184G39969 Striga asiatica HOM05D006640 ORTHO05D008078 2.7e-56 222.6 201 60.2
CSS0028139 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 1.7e-55 219.9 200 59.5
COL.COLO4_07395 Corchorus olitorius HOM05D006640 ORTHO05D008078 2.9e-55 219.2 202 59.4
Dinv27390 Davidia involucrata HOM05D006640 ORTHO05D008078 5.0e-55 218.4 170 70.0
Duzib205G0266 Durio zibethinus HOM05D006640 ORTHO05D008078 5.0e-55 218.4 188 59.0
DCAR_013930 Daucus carota HOM05D006640 ORTHO05D008078 1.1e-54 217.2 207 57.5
HanXRQChr02g0057271 Helianthus annuus HOM05D006640 ORTHO05D008078 1.5e-54 216.9 200 56.5
ClCG02G003390 Citrullus lanatus HOM05D006640 ORTHO05D008078 1.9e-54 216.5 200 60.0
MELO3C013247.2 Cucumis melo HOM05D006640 ORTHO05D008078 3.2e-54 215.7 200 60.5
ECA232G3411 Erigeron canadensis HOM05D006640 ORTHO05D008078 3.2e-54 215.7 200 58.0
CsaV3_7G001930 Cucumis sativus L. HOM05D006640 ORTHO05D008078 5.5e-54 214.9 200 60.5
SalBow6G0872 Salvia bowleyana HOM05D006640 ORTHO05D008078 9.4e-54 214.2 191 61.3
Aa31LG9G12490 Aethionema arabicum HOM05D006640 ORTHO05D008078 4.7e-53 211.8 197 56.9
CSS0036253 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 8.0e-53 211.1 207 56.5
CDE02G0900 Ceratophyllum demersum HOM05D006640 ORTHO05D008078 8.0e-53 211.1 198 53.0
Aqoxy6G01598 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 4.0e-52 208.8 197 55.8
Rhsim08G0078300 Rhododendron simsii HOM05D006640 ORTHO05D008078 8.8e-52 207.6 185 60.0
Thhalv10003275m.g Eutrema salsugineum HOM05D006640 ORTHO05D008078 1.5e-51 206.8 198 56.1
THA.LOC104820569 Tarenaya hassleriana HOM05D006640 ORTHO05D008078 2.0e-51 206.5 198 56.6
Hma1.2p1_0612F.1_g188900 Hydrangea macrophylla HOM05D006640 ORTHO05D008078 2.6e-51 206.1 156 67.3
MBI06_g19633_MAGBIO Magnolia biondii HOM05D006640 ORTHO05D008078 9.8e-51 204.1 182 61.0
Cpa.g.sc26.165 Carica papaya HOM05D006640 ORTHO05D008078 1.7e-50 203.4 185 59.5
Carub.0008s0481 Capsella rubella HOM05D006640 ORTHO05D008078 2.8e-50 202.6 198 55.6
CARHR179670 Cardamine hirsuta HOM05D006640 ORTHO05D008078 4.8e-50 201.8 198 56.1
Phvul.008G111000 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 6.3e-50 201.4 185 57.3
ATR0807G089 Amborella trichopoda HOM05D006640 ORTHO05D008078 1.4e-49 200.3 198 53.0
AUR62005948 Chenopodium quinoa HOM05D006640 ORTHO05D008078 5.4e-49 198.4 185 56.2
AL8G16350 Arabidopsis lyrata HOM05D006640 ORTHO05D008078 1.2e-48 197.2 198 52.5
AT5G43822 Arabidopsis thaliana HOM05D006640 ORTHO05D008078 2.0e-48 196.4 198 53.0
PSO541G3394 Papaver somniferum HOM05D006640 ORTHO05D008078 5.9e-48 194.9 200 52.5
PSO675G3428 Papaver somniferum HOM05D006640 ORTHO05D008078 1.7e-47 193.4 200 52.0
Os10g0566900 Oryza sativa ssp. japonica HOM05D006640 ORTHO05D008078 6.5e-47 191.4 200 52.5
BcaC06g34624 Brassica carinata HOM05D006640 ORTHO05D008078 2.5e-46 189.5 198 51.5
BcaC06g31675 Brassica carinata HOM05D006640 ORTHO05D008078 9.5e-46 187.6 198 51.0
BraA06t27635Z Brassica rapa HOM05D006640 ORTHO05D008078 6.1e-45 184.9 198 50.0
Nn5g31001 Nelumbo nucifera HOM05D006640 ORTHO05D008078 1.0e-44 184.1 147 66.0
Lsat_1_v5_gn_9_28760 Lactuca sativa HOM05D006640 ORTHO05D008078 1.4e-44 183.7 185 51.9
Sabra05G0196400 Salix brachista HOM05D006640 ORTHO05D008078 2.0e-43 179.9 187 54.0
Ah.13g071040 Amaranthus hybridus HOM05D006277 ORTHO05D008078 3.4e-43 179.1 249 43.8
Lsat_1_v5_gn_0_27580 Lactuca sativa HOM05D006640 ORTHO05D008078 7.5e-43 177.9 200 48.5
Phvul.006G070300 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 2.4e-41 172.9 137 62.8
AUR62028117 Chenopodium quinoa HOM05D006640 ORTHO05D008078 4.5e-40 168.7 177 52.5
VMungo0540G0999 Vigna mungo HOM05D006640 ORTHO05D008078 3.8e-39 165.6 146 59.6
unitig_46.g18025 Utricularia gibba HOM05D006640 ORTHO05D008078 6.6e-39 164.9 205 45.9
Sp2g08620 Schrenkiella parvula HOM05D006218 ORTHO05D007338 1.5e-38 163.7 195 45.6
Sc24g0000300 Simmondsia chinensis HOM05D006640 ORTHO05D008078 2.3e-36 156.4 115 67.0
HPP92_007449 Vanilla planifolia HOM05D006640 ORTHO05D008078 8.9e-36 154.5 186 46.2
SHI14582 Sapria himalayana HOM05D006640 ORTHO05D008078 1.5e-35 153.7 163 53.4
Nitab4.5_0001208g0130 Nicotiana tabacum HOM05D006640 ORTHO05D008078 7.5e-35 151.4 131 64.1
Sed0007887 Sechium edule HOM05D006640 ORTHO05D008078 9.8e-35 151.0 145 58.6
Mapoly0033s0101 Marchantia polymorpha HOM05D006640 ORTHO05D008078 2.2e-34 149.8 193 44.0
RcHm_v2.0_Chr3g0481381 Rosa chinensis HOM05D006640 ORTHO05D008078 1.8e-33 146.7 108 71.3
Aqoxy2G03352 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 1.2e-29 134.0 158 48.7
Pp3c20_21140 Physcomitrium patens HOM05D000227 ORTHO05D008078 1.6e-29 133.7 185 42.7
Zm00001eb327920 Zea mays HOM05D006640 ORTHO05D008078 1.1e-28 131.0 157 44.6
Nitab4.5_0000383g0410 Nicotiana tabacum HOM05D006640 ORTHO05D008078 1.4e-28 130.6 110 64.5
CSS0011114 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 3.1e-28 129.4 152 48.7
Lj4C809G7 Lonicera japonica HOM05D006640 ORTHO05D008078 4.0e-28 129.0 146 49.3
Gohir.D09G047201 Gossypium hirsutum HOM05D006640 ORTHO05D008078 8.9e-28 127.9 109 58.7
Nitab4.5_0010095g0020 Nicotiana tabacum HOM05D006640 ORTHO05D008078 2.2e-26 123.2 87 69.0
Duzib205G1379 Durio zibethinus HOM05D006640 ORTHO05D008078 9.2e-25 117.9 129 49.6
RcHm_v2.0_Chr3g0481391 Rosa chinensis HOM05D006640 ORTHO05D008078 1.3e-23 114.0 85 72.9
Cfa015562 Carpinus fangiana HOM05D006640 ORTHO05D008078 3.9e-23 112.5 185 36.2
AagrBONN_evm.TU.Sc2ySwM_362.2824 Anthoceros agrestis HOM05D006640 ORTHO05D008078 9.5e-22 107.8 155 41.9
Peaxi162Scf00139g00094 Petunia axillaris HOM05D006640 ORTHO05D008078 9.5e-22 107.8 165 39.4
Actinidia35855 Actinidia chinensis HOM05D002342 ORTHO05D002407 8.9e-20 101.3 85 63.5
Atru.chr3.42 Acer truncatum HOM05D006640 ORTHO05D008078 1.5e-19 100.5 61 75.4
CBR_g30123 Chara braunii HOM05D006640 ORTHO05D008078 4.6e-16 89.0 191 30.9
CDE04G0756 Ceratophyllum demersum HOM05D006640 ORTHO05D008078 7.3e-14 81.6 110 38.2
FvH4_6g22960 Fragaria vesca HOM05D006640 ORTHO05D008078 4.0e-12 75.9 55 67.3
MD08G1245200 Malus domestica HOM05D006640 ORTHO05D008078 2.6e-11 73.2 38 89.5
Aqoxy2G03351 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 4.4e-11 72.4 57 66.7
vmacro03672 Vaccinium macrocarpon HOM05D002991 ORTHO05D003480 4.6e-08 62.4 71 46.5


User provided reference genes

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