Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G3535 Fragaria x ananassa HOM05D004623 ORTHO05D005100 1.3e-227 793.1 531 100.0
FvH4_5g10960 Fragaria vesca HOM05D004623 ORTHO05D005100 2.3e-224 782.3 532 99.2
FAN08G2217 Fragaria x ananassa HOM05D004623 ORTHO05D005100 2.3e-216 755.7 531 96.2
FAN04G2529 Fragaria x ananassa HOM05D004623 ORTHO05D005100 9.7e-215 750.4 538 85.3
FAN13G2046 Fragaria x ananassa HOM05D004623 ORTHO05D005100 4.0e-208 728.4 532 94.0
RcHm_v2.0_Chr7g0186861 Rosa chinensis HOM05D004623 ORTHO05D005100 1.8e-205 719.5 533 82.0
MD14G1126200 Malus domestica HOM05D004623 ORTHO05D005100 4.0e-184 648.7 535 80.4
Prupe.5G129200 Prunus persica HOM05D004623 ORTHO05D005100 2.1e-177 626.3 532 79.7
ClCG10G000820 Citrullus lanatus HOM05D004623 ORTHO05D005100 2.4e-165 586.3 471 74.3
CANSAT21G1410 Cannabis sativa HOM05D004623 ORTHO05D005100 1.0e-163 580.9 447 80.1
CsaV3_3G000890 Cucumis sativus L. HOM05D004623 ORTHO05D005100 1.3e-163 580.5 466 78.8
PGR031G2083 Punica granatum HOM05D004623 ORTHO05D005100 1.5e-162 577.0 470 73.2
Sed0004618 Sechium edule HOM05D004623 ORTHO05D005100 1.9e-162 576.6 477 72.7
CiPaw.12G077700 Carya illinoinensis HOM05D004623 ORTHO05D005100 9.5e-162 574.3 475 75.4
arahy.Tifrunner.gnm1.ann1.6R22RC Arachis hypogaea HOM05D004623 ORTHO05D005100 2.8e-161 572.8 469 74.2
VMungo0720G2137 Vigna mungo HOM05D004623 ORTHO05D005100 4.7e-161 572.0 467 72.4
arahy.Tifrunner.gnm1.ann1.CHU5UJ Arachis hypogaea HOM05D004623 ORTHO05D005100 6.2e-161 571.6 469 77.8
Cfa011928 Carpinus fangiana HOM05D004623 ORTHO05D005100 6.8e-160 568.2 538 74.0
Ca_09948_v3 Cicer arietinum L. HOM05D004623 ORTHO05D005100 4.4e-159 565.5 467 71.7
PSO063G4918 Papaver somniferum HOM05D004623 ORTHO05D005100 5.8e-159 565.1 476 71.6
TWI81G0490 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 2.9e-158 562.8 540 76.3
Eucgr.D01683 Eucalyptus grandis HOM05D004623 ORTHO05D005100 6.4e-158 561.6 468 71.6
Haze_09171 Corylus avellana HOM05D004623 ORTHO05D005100 1.4e-157 560.5 547 72.2
CiPaw.11G112800 Carya illinoinensis HOM05D004623 ORTHO05D005100 1.9e-157 560.1 472 74.8
Dinv12926 Davidia involucrata HOM05D004623 ORTHO05D005100 5.4e-157 558.5 452 77.2
Ciclev10019829m.g Citrus clementina HOM05D004623 ORTHO05D005100 1.2e-156 557.4 483 73.5
Phvul.L005101 Phaseolus vulgaris HOM05D004623 ORTHO05D005100 1.2e-156 557.4 467 75.4
MELO3C013775.2 Cucumis melo HOM05D004623 ORTHO05D005100 2.7e-156 556.2 523 61.4
Medtr1g077850 Medicago truncatula HOM05D004623 ORTHO05D005100 2.7e-156 556.2 468 71.6
Lalb_Chr21g0311621 Lupinus albus HOM05D004623 ORTHO05D005100 3.5e-156 555.8 464 70.7
Aqoxy7G00024 Aquilegia oxysepala HOM05D004623 ORTHO05D005100 3.0e-155 552.7 479 73.3
TWI15G0843 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 5.1e-155 552.0 470 76.4
Glyma.20G217500 Glycine max HOM05D004623 ORTHO05D005100 6.6e-155 551.6 441 74.4
Psat6g053240 Pisum sativum HOM05D004623 ORTHO05D005100 1.5e-154 550.4 466 71.7
TPR.G34807 Trifolium pratense HOM05D004623 ORTHO05D005100 1.9e-154 550.1 442 73.5
Atru.chr9.1891 Acer truncatum HOM05D004623 ORTHO05D005100 4.3e-154 548.9 437 73.9
CSS0032200 Camellia sinensis var. sinensis HOM05D004623 ORTHO05D005100 1.2e-153 547.4 482 71.8
COL.COLO4_10792 Corchorus olitorius HOM05D004623 ORTHO05D005100 1.2e-153 547.4 475 74.1
PSO782G3970 Papaver somniferum HOM05D004623 ORTHO05D005100 3.6e-153 545.8 476 70.2
TAR629G1871 Trochodendron aralioides HOM05D004623 ORTHO05D005100 8.1e-153 544.7 484 72.5
Thecc.03G221500 Theobroma cacao HOM05D004623 ORTHO05D005100 1.1e-152 544.3 475 74.7
Cc08_g16710 Coffea canephora HOM05D004623 ORTHO05D005100 1.8e-152 543.5 434 74.7
Cpa.g.sc175.24 Carica papaya HOM05D004623 ORTHO05D005100 4.0e-152 542.3 446 76.2
SGA_v2.0_scaffold127G33962 Striga asiatica HOM05D004623 ORTHO05D005100 7.6e-151 538.1 468 72.2
Lj2A157G52 Lonicera japonica HOM05D004623 ORTHO05D005100 9.9e-151 537.7 446 77.8
Potri.003G146200 Populus trichocarpa HOM05D004623 ORTHO05D005100 9.9e-151 537.7 475 76.6
TAR375G0778 Trochodendron aralioides HOM05D004623 ORTHO05D005100 1.3e-150 537.3 473 73.4
Nitab4.5_0004251g0030 Nicotiana tabacum HOM05D004623 ORTHO05D005100 1.1e-149 534.3 438 77.2
AUR62007050 Chenopodium quinoa HOM05D004623 ORTHO05D005100 3.2e-149 532.7 474 68.4
Hma1.2p1_0456F.1_g156590 Hydrangea macrophylla HOM05D004623 ORTHO05D005100 4.2e-149 532.3 455 70.5
Migut.E00632 Erythranthe guttata HOM05D004623 ORTHO05D005100 5.4e-149 531.9 456 73.0
Nitab4.5_0007063g0040 Nicotiana tabacum HOM05D004623 ORTHO05D005100 4.6e-148 528.9 464 73.5
Duzib205G1161 Durio zibethinus HOM05D004623 ORTHO05D005100 1.0e-147 527.7 487 65.5
Nn1g00375 Nelumbo nucifera HOM05D004623 ORTHO05D005100 1.3e-147 527.3 487 69.4
MSTRG.13716 Avicennia marina HOM05D004623 ORTHO05D005100 2.3e-147 526.6 457 72.6
Hund11352 Selenicereus undatus HOM05D004623 ORTHO05D005100 6.6e-147 525.0 459 70.8
Gohir.D08G123000 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.1e-146 524.2 473 72.7
Rhsim02G0251800 Rhododendron simsii HOM05D004623 ORTHO05D005100 1.9e-146 523.5 491 61.5
Sopen08g031290 Solanum pennellii HOM05D004623 ORTHO05D005100 2.5e-146 523.1 449 74.2
HanXRQChr03g0086131 Helianthus annuus HOM05D004623 ORTHO05D005100 3.3e-146 522.7 434 76.0
Solyc08g083070.3 Solanum lycopersicum HOM05D004623 ORTHO05D005100 3.3e-146 522.7 449 74.2
THA.LOC104823625 Tarenaya hassleriana HOM05D004623 ORTHO05D005100 3.3e-146 522.7 469 71.0
GSVIVG01019647001 Vitis vinifera HOM05D004623 ORTHO05D005100 3.3e-146 522.7 431 73.1
Aa31LG9G240 Aethionema arabicum HOM05D004623 ORTHO05D005100 5.6e-146 521.9 457 67.8
Gohir.A08G110100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 7.3e-146 521.5 473 71.9
SalBow1G2042 Salvia bowleyana HOM05D004623 ORTHO05D005100 7.3e-146 521.5 433 76.2
CAN.G567.85 Capsicum annuum HOM05D004623 ORTHO05D005100 1.3e-145 520.8 439 75.9
CDE09G0653 Ceratophyllum demersum HOM05D004623 ORTHO05D005100 1.6e-145 520.4 490 65.3
Gorai.004G129800 Gossypium raimondii HOM05D004623 ORTHO05D005100 3.6e-145 519.2 505 65.1
BcaB06g27683 Brassica carinata HOM05D004623 ORTHO05D005100 8.1e-145 518.1 459 71.0
Gohir.A09G188600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 3.1e-144 516.2 474 70.7
MD06G1118100 Malus domestica HOM05D004623 ORTHO05D005100 4.0e-144 515.8 350 79.4
QL02p028195 Quercus lobata HOM05D004623 ORTHO05D005100 4.0e-144 515.8 382 84.6
Lj5g0020025 Lotus japonicus HOM05D004623 ORTHO05D005100 4.5e-143 512.3 410 74.4
Gohir.D09G183500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 4.9e-142 508.8 474 70.0
AT5G41950 Arabidopsis thaliana HOM05D004623 ORTHO05D005100 8.4e-142 508.1 462 70.1
Dinv16877 Davidia involucrata HOM05D004623 ORTHO05D005100 8.4e-142 508.1 438 70.5
Lj8A201G75 Lonicera japonica HOM05D004623 ORTHO05D005100 1.1e-141 507.7 399 75.2
Sp7g00180 Schrenkiella parvula HOM05D004623 ORTHO05D005100 1.9e-141 506.9 459 69.9
Thhalv10027708m.g Eutrema salsugineum HOM05D004623 ORTHO05D005100 4.2e-141 505.8 463 70.4
BcaC02g08901 Brassica carinata HOM05D004623 ORTHO05D005100 1.2e-140 504.2 462 69.9
BolC4t26520H Brassica oleracea HOM05D004623 ORTHO05D005100 1.2e-140 504.2 462 69.9
Glyma.10G172800 Glycine max HOM05D004623 ORTHO05D005100 4.6e-140 502.3 468 66.9
ATR0620G132 Amborella trichopoda HOM05D004623 ORTHO05D005100 1.0e-139 501.1 381 76.9
Gohir.A02G098100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.3e-139 500.7 471 71.5
AL7G47270 Arabidopsis lyrata HOM05D004623 ORTHO05D005100 3.9e-139 499.2 440 72.5
C04p49340 Brassica napus HOM05D003273 ORTHO05D005100 5.1e-139 498.8 457 69.8
CARHR212610 Cardamine hirsuta HOM05D004623 ORTHO05D005100 5.1e-139 498.8 468 69.0
Gorai.006G205900 Gossypium raimondii HOM05D004623 ORTHO05D005100 6.6e-139 498.4 472 69.1
Sabra03G0106400 Salix brachista HOM05D004623 ORTHO05D005100 1.1e-138 497.7 509 67.6
Carub.0007s3343 Capsella rubella HOM05D004623 ORTHO05D005100 1.9e-138 496.9 457 70.0
Gohir.D03G085500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.9e-138 496.9 471 71.1
Sc22g0004710 Simmondsia chinensis HOM05D004623 ORTHO05D005100 1.9e-138 496.9 463 70.4
unitig_62.g23647 Utricularia gibba HOM05D004623 ORTHO05D005100 5.6e-138 495.4 461 70.1
A04p15110 Brassica napus HOM05D003273 ORTHO05D005100 9.6e-138 494.6 457 69.4
BraA04t17152Z Brassica rapa HOM05D003273 ORTHO05D005100 9.6e-138 494.6 457 69.4
Gorai.003G076800 Gossypium raimondii HOM05D004623 ORTHO05D005100 9.0e-136 488.0 488 68.6
DCAR_006543 Daucus carota HOM05D004623 ORTHO05D005100 9.9e-135 484.6 443 67.7
vmacro11504 Vaccinium macrocarpon HOM05D004623 ORTHO05D005100 1.3e-134 484.2 457 60.2
Os03g0113800 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 3.2e-133 479.6 432 68.3
Zm00001eb220090 Zea mays HOM05D004623 ORTHO05D005100 1.6e-132 477.2 475 63.2
AUR62019914 Chenopodium quinoa HOM05D004623 ORTHO05D005100 2.1e-132 476.9 468 67.9
Lalb_Chr02g0149581 Lupinus albus HOM05D004623 ORTHO05D005100 7.9e-132 474.9 463 68.5
SEGI_26605 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 4.3e-130 469.2 387 76.7
Manes.01G051700 Manihot esculenta HOM05D004623 ORTHO05D005100 7.4e-130 468.4 541 65.4
EL10Ac5g12433 Beta vulgaris HOM05D004623 ORTHO05D005100 4.0e-128 462.6 478 61.9
Lsat_1_v5_gn_3_14141 Lactuca sativa HOM05D004623 ORTHO05D005100 1.1e-125 454.5 422 72.0
Duzib068G0531 Durio zibethinus HOM05D004623 ORTHO05D005100 7.9e-124 448.4 477 65.2
ECA246G3914 Erigeron canadensis HOM05D004623 ORTHO05D005100 2.3e-123 446.8 455 65.9
Lsat_1_v5_gn_6_82240 Lactuca sativa HOM05D004623 ORTHO05D005100 2.0e-119 433.7 450 65.3
Os10g0518300 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 2.9e-118 429.9 471 59.9
ECA240G2146 Erigeron canadensis HOM05D004623 ORTHO05D005100 3.8e-118 429.5 415 68.2
Oeu041377.1 Olea europaea HOM05D004623 ORTHO05D005100 5.0e-118 429.1 451 65.4
Manes.02G003100 Manihot esculenta HOM05D004623 ORTHO05D005100 1.8e-115 420.6 376 75.8
Zm00001eb043430 Zea mays HOM05D004623 ORTHO05D005100 1.8e-115 420.6 402 66.7
Mapoly0068s0096 Marchantia polymorpha HOM05D004623 ORTHO05D005100 1.2e-108 397.9 389 63.8
Peaxi162Scf00074g00026 Petunia axillaris HOM05D004623 ORTHO05D005100 8.8e-107 391.7 484 51.2
HanXRQChr06g0166801 Helianthus annuus HOM05D004623 ORTHO05D005100 1.8e-104 384.0 399 64.9
Actinidia22205 Actinidia chinensis HOM05D004623 ORTHO05D005100 9.4e-101 371.7 343 67.3
HPP92_007396 Vanilla planifolia HOM05D004623 ORTHO05D005100 6.7e-99 365.5 323 66.6
AagrBONN_evm.TU.Sc2ySwM_344.2453 Anthoceros agrestis HOM05D004623 ORTHO05D005100 2.2e-97 360.5 391 59.8
TWI15G1120 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 2.9e-94 350.1 419 60.1
HanXRQChr17g0534721 Helianthus annuus HOM05D004623 ORTHO05D005100 3.8e-94 349.7 338 72.8
Migut.E00624 Erythranthe guttata HOM05D004623 ORTHO05D005100 1.1e-93 348.2 333 74.5
MBI12_g13717_MAGBIO Magnolia biondii HOM05D004623 ORTHO05D005100 2.1e-84 317.4 600 42.7
SMO134G0154 Selaginella moellendorffii HOM05D004623 ORTHO05D005100 1.4e-83 314.7 278 58.3
Pp3c1_15130 Physcomitrium patens HOM05D004623 ORTHO05D005100 2.2e-81 307.4 462 49.6
CBR_g24226 Chara braunii HOM05D004623 ORTHO05D005100 1.9e-77 294.3 474 45.8
Oeu013386.1 Olea europaea HOM05D004623 ORTHO05D005100 3.0e-75 287.0 272 76.5
BolC6t37215H Brassica oleracea HOM05D004623 ORTHO05D005100 6.8e-75 285.8 236 65.3
Pp3c2_21950 Physcomitrium patens HOM05D004623 ORTHO05D005100 2.4e-64 250.8 377 40.8
HanXRQChr05g0133491 Helianthus annuus HOM05D004623 ORTHO05D005100 5.2e-51 206.5 131 78.6
Gorai.001G213600 Gossypium raimondii HOM05D004623 ORTHO05D005100 3.7e-49 200.3 152 65.8
Gohir.A06G102600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.2e-44 185.3 141 65.2
Gorai.003G053400 Gossypium raimondii HOM05D004623 ORTHO05D005100 4.7e-44 183.3 141 63.8
Gohir.D05G097100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 6.2e-44 183.0 141 64.5
C06p20370 Brassica napus HOM05D004623 ORTHO05D005100 3.1e-43 180.6 175 57.1
Gohir.D08G109908 Gossypium hirsutum HOM05D004623 ORTHO05D005100 3.5e-39 167.2 168 54.8
Gohir.D01G085875 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.3e-38 165.2 134 61.2
Gorai.002G111300 Gossypium raimondii HOM05D004623 ORTHO05D005100 3.0e-38 164.1 134 61.2
SEGI_12617 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 1.5e-34 151.8 95 81.1
Gohir.D07G097001 Gossypium hirsutum HOM05D004623 ORTHO05D005100 9.9e-34 149.1 128 60.9
Gohir.D03G136750 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.7e-31 141.0 171 48.5
SEGI_10381 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 9.0e-27 125.9 106 60.4
Gohir.D04G089675 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.1e-24 119.0 76 73.7
MCO14G177 Micromonas commoda HOM05D004623 ORTHO05D005100 3.2e-24 117.5 311 30.2
BcaC08g44571 Brassica carinata HOM05D004623 ORTHO05D005100 9.6e-21 105.9 73 69.9
Cre09.g387550 Chlamydomonas reinhardtii HOM05D004623 ORTHO05D005100 1.2e-18 99.0 209 31.6
TPR.G39353 Trifolium pratense HOM05D004623 ORTHO05D005100 2.9e-17 94.4 52 82.7
Glyma.02G157002 Glycine max HOM05D000518 ORTHO05D005100 2.7e-15 87.8 55 76.4
MD08G1234800 Malus domestica HOM05D008315 ORTHO05D009452 1.1e-13 82.4 57 73.7
Actinidia15203 Actinidia chinensis HOM05D004623 ORTHO05D005100 2.8e-12 77.8 71 63.4
Lsat_1_v5_gn_1_84960 Lactuca sativa HOM05D004623 ORTHO05D005100 2.8e-12 77.8 68 63.2
Actinidia19830 Actinidia chinensis HOM05D004623 ORTHO05D005100 2.4e-11 74.7 52 75.0
Lsat_1_v5_gn_3_125120 Lactuca sativa HOM05D004623 ORTHO05D005100 5.5e-08 63.5 123 38.2


User provided reference genes

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