Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G3505 Fragaria x ananassa HOM05D007115 ORTHO05D008923 4.8e-160 567.8 288 100.0
FvH4_5g08420 Fragaria vesca HOM05D007115 ORTHO05D008923 3.8e-157 558.1 289 98.6
FAN04G1902 Fragaria x ananassa HOM05D007115 ORTHO05D008923 4.7e-155 551.2 289 97.6
FAN13G1038 Fragaria x ananassa HOM05D007115 ORTHO05D008923 4.9e-152 541.2 285 96.8
FAN08G1896 Fragaria x ananassa HOM05D007115 ORTHO05D008923 5.1e-125 451.4 237 97.0
RcHm_v2.0_Chr7g0190021 Rosa chinensis HOM05D007115 ORTHO05D008923 3.3e-116 422.2 237 90.3
Prupe.5G150000 Prunus persica HOM05D007115 ORTHO05D008923 9.3e-95 350.9 225 80.9
MD06G1140800 Malus domestica HOM05D007115 ORTHO05D008923 1.5e-92 343.6 228 77.2
Haze_07151 Corylus avellana HOM05D007115 ORTHO05D008923 1.8e-85 320.1 226 73.5
Cfa018785 Carpinus fangiana HOM05D007115 ORTHO05D008923 1.1e-84 317.4 226 73.0
CiPaw.12G043900 Carya illinoinensis HOM05D007115 ORTHO05D008923 1.5e-84 317.0 226 71.2
GSVIVG01008566001 Vitis vinifera HOM05D007115 ORTHO05D008923 7.2e-79 298.1 214 69.2
Atru.chr6.1807 Acer truncatum HOM05D007115 ORTHO05D008923 1.2e-78 297.4 222 68.0
Dinv23157 Davidia involucrata HOM05D007115 ORTHO05D008923 1.6e-78 297.0 213 70.4
Manes.14G050500 Manihot esculenta HOM05D007115 ORTHO05D008923 2.7e-78 296.2 234 66.2
Sabra15G0118300 Salix brachista HOM05D007115 ORTHO05D008923 2.3e-77 293.1 226 65.9
Actinidia25565 Actinidia chinensis HOM05D007115 ORTHO05D008923 1.1e-76 290.8 229 67.2
Potri.015G097700 Populus trichocarpa HOM05D007115 ORTHO05D008923 1.9e-76 290.0 223 65.9
Cpa.g.sc13.101 Carica papaya HOM05D007115 ORTHO05D008923 4.3e-76 288.9 226 65.5
Hma1.2p1_0014F.1_g009320 Hydrangea macrophylla HOM05D007115 ORTHO05D008923 6.3e-75 285.0 227 65.6
Glyma.06G169300 Glycine max HOM05D007115 ORTHO05D008923 2.4e-74 283.1 222 66.7
Glyma.04G196500 Glycine max HOM05D007115 ORTHO05D008923 5.3e-74 282.0 222 67.6
Rhsim08G0191000 Rhododendron simsii HOM05D007115 ORTHO05D008923 5.3e-74 282.0 227 64.8
Ca_16052_v3 Cicer arietinum L. HOM05D007115 ORTHO05D008923 6.9e-74 281.6 225 67.1
QL10p002688 Quercus lobata HOM05D007115 ORTHO05D008923 2.0e-73 280.0 279 57.0
CANSAT80G2203 Cannabis sativa HOM05D007115 ORTHO05D008923 1.3e-72 277.3 229 64.6
Ciclev10032623m.g Citrus clementina HOM05D007115 ORTHO05D008923 1.7e-72 276.9 234 64.5
Duzib205G1497 Durio zibethinus HOM05D007115 ORTHO05D008923 2.9e-72 276.2 224 63.8
Aqoxy5G03328 Aquilegia oxysepala HOM05D007115 ORTHO05D008923 1.9e-71 273.5 244 62.3
ClCG03G003830 Citrullus lanatus HOM05D007115 ORTHO05D008923 1.9e-71 273.5 193 69.9
vmacro19121 Vaccinium macrocarpon HOM05D007115 ORTHO05D008923 2.5e-71 273.1 231 63.6
TWI39G0929 Tripterygium wilfordii HOM05D007115 ORTHO05D008923 3.2e-71 272.7 253 61.3
CSS0028949 Camellia sinensis var. sinensis HOM05D007115 ORTHO05D008923 5.5e-71 271.9 237 63.7
VMungo1309G2111 Vigna mungo HOM05D007115 ORTHO05D008923 5.5e-71 271.9 222 64.4
Sc04g0000560 Simmondsia chinensis HOM05D007115 ORTHO05D008923 7.2e-71 271.6 227 62.6
CSS0028892 Camellia sinensis var. sinensis HOM05D007115 ORTHO05D008923 9.4e-71 271.2 236 64.8
Lj1g0010129 Lotus japonicus HOM05D007115 ORTHO05D008923 1.2e-70 270.8 224 65.2
Hund02448 Selenicereus undatus HOM05D007115 ORTHO05D008923 1.6e-70 270.4 240 58.8
MELO3C002367.2 Cucumis melo HOM05D007115 ORTHO05D008923 2.1e-70 270.0 193 68.4
Medtr3g099140 Medicago truncatula HOM05D007115 ORTHO05D008923 2.1e-70 270.0 211 67.8
CsaV3_1G009730 Cucumis sativus L. HOM05D007115 ORTHO05D008923 2.7e-70 269.6 194 67.5
Thecc.03G130400 Theobroma cacao HOM05D007115 ORTHO05D008923 3.6e-70 269.2 223 61.9
Lj5A95G76 Lonicera japonica HOM05D007115 ORTHO05D008923 7.9e-70 268.1 199 69.3
Lsat_1_v5_gn_1_33120 Lactuca sativa HOM05D007115 ORTHO05D008923 2.3e-69 266.5 239 59.0
Lalb_Chr11g0069511 Lupinus albus HOM05D007115 ORTHO05D008923 5.1e-69 265.4 225 62.7
Phvul.009G165800 Phaseolus vulgaris HOM05D007115 ORTHO05D008923 3.3e-68 262.7 203 66.5
THA.LOC104811583 Tarenaya hassleriana HOM05D007115 ORTHO05D008923 5.7e-68 261.9 236 58.9
Oeu004998.1 Olea europaea HOM05D007115 ORTHO05D008923 9.7e-68 261.2 180 70.0
ATR0790G002 Amborella trichopoda HOM05D007115 ORTHO05D008923 1.7e-67 260.4 223 60.5
HanXRQChr02g0034681 Helianthus annuus HOM05D007115 ORTHO05D008923 1.7e-67 260.4 214 64.5
TPR.G14207 Trifolium pratense HOM05D007115 ORTHO05D008923 2.2e-67 260.0 221 63.8
AL7G28270 Arabidopsis lyrata HOM05D007115 ORTHO05D008923 2.8e-67 259.6 229 61.1
Nitab4.5_0000624g0110 Nicotiana tabacum HOM05D007115 ORTHO05D008923 1.5e-65 253.8 233 57.5
AT4G24930 Arabidopsis thaliana HOM05D007115 ORTHO05D008923 7.7e-65 251.5 226 58.8
Nitab4.5_0001311g0160 Nicotiana tabacum HOM05D007115 ORTHO05D008923 1.7e-64 250.4 186 66.1
PGSC0003DMG400015264 Solanum tuberosum HOM05D007115 ORTHO05D008923 2.9e-64 249.6 221 58.4
Carub.0007s1613 Capsella rubella HOM05D007115 ORTHO05D008923 3.8e-64 249.2 220 60.0
Sopen03g029960 Solanum pennellii HOM05D007115 ORTHO05D008923 1.4e-63 247.3 180 66.7
Solyc03g019660.4 Solanum lycopersicum HOM05D007115 ORTHO05D008923 2.5e-63 246.5 215 59.5
CARHR232330 Cardamine hirsuta HOM05D007115 ORTHO05D008923 3.2e-63 246.1 202 63.9
PGR083G2674 Punica granatum HOM05D007115 ORTHO05D008923 5.5e-63 245.4 169 71.0
Gohir.D11G039800 Gossypium hirsutum HOM05D007115 ORTHO05D008923 7.2e-63 245.0 211 62.1
CAN.G1611.7 Capsicum annuum HOM05D007115 ORTHO05D008923 9.4e-63 244.6 181 66.3
MSTRG.11273 Avicennia marina HOM05D007115 ORTHO05D008923 1.2e-62 244.2 180 67.2
Eucgr.B00101 Eucalyptus grandis HOM05D007115 ORTHO05D008923 1.2e-62 244.2 191 66.0
AUR62034838 Chenopodium quinoa HOM05D007115 ORTHO05D008923 2.7e-62 243.0 167 68.9
Peaxi162Scf00089g00121 Petunia axillaris HOM05D007115 ORTHO05D008923 2.7e-62 243.0 233 56.7
Gohir.A11G036350 Gossypium hirsutum HOM05D007115 ORTHO05D008923 1.0e-61 241.1 173 69.4
EL10Ac5g11401 Beta vulgaris HOM05D007115 ORTHO05D008923 1.8e-61 240.4 176 67.0
BcaNung06011 Brassica carinata HOM05D007115 ORTHO05D008923 2.3e-61 240.0 227 55.9
BolC1t01950H Brassica oleracea HOM05D007115 ORTHO05D008923 3.0e-61 239.6 228 56.1
Aa31LG7G10860 Aethionema arabicum HOM05D007115 ORTHO05D008923 5.2e-61 238.8 226 57.1
DCAR_007496 Daucus carota HOM05D007115 ORTHO05D008923 6.7e-61 238.4 210 62.9
Thhalv10026135m.g Eutrema salsugineum HOM05D007115 ORTHO05D008923 6.7e-61 238.4 186 65.6
Gorai.007G042800 Gossypium raimondii HOM05D007115 ORTHO05D008923 6.7e-61 238.4 211 59.7
ECA247G2755 Erigeron canadensis HOM05D001512 ORTHO05D001574 2.6e-60 236.5 149 73.2
A01p16220 Brassica napus HOM05D007115 ORTHO05D008923 7.4e-60 235.0 230 54.8
BraA01t01558Z Brassica rapa HOM05D007115 ORTHO05D008923 7.4e-60 235.0 230 54.8
CDE02G1164 Ceratophyllum demersum HOM05D007115 ORTHO05D008923 9.7e-60 234.6 226 55.3
unitig_8.g3030 Utricularia gibba HOM05D007115 ORTHO05D008923 4.8e-59 232.3 244 51.6
Sp7g22910 Schrenkiella parvula HOM05D007115 ORTHO05D008923 1.1e-58 231.1 231 56.3
C01p20210 Brassica napus HOM05D007115 ORTHO05D008923 3.5e-57 226.1 232 53.0
PSO017G0512 Papaver somniferum HOM05D007115 ORTHO05D008923 7.7e-57 224.9 176 66.5
Migut.I00540 Erythranthe guttata HOM05D007115 ORTHO05D008923 5.0e-56 222.2 223 56.1
Cc04_g09720 Coffea canephora HOM05D007115 ORTHO05D008923 1.1e-55 221.1 200 59.0
HPP92_023120 Vanilla planifolia HOM05D007115 ORTHO05D008923 2.5e-55 219.9 184 59.2
SalBow5G3672 Salvia bowleyana HOM05D007115 ORTHO05D008923 1.2e-54 217.6 261 49.4
Nn4g22293 Nelumbo nucifera HOM05D007115 ORTHO05D008923 8.8e-53 211.5 134 74.6
TAR622G0416 Trochodendron aralioides HOM05D007115 ORTHO05D008923 1.5e-52 210.7 174 61.5
SGA_v2.0_scaffold258G45802 Striga asiatica HOM05D007115 ORTHO05D008923 5.9e-49 198.7 237 48.5
arahy.Tifrunner.gnm1.ann1.YTW6SU Arachis hypogaea HOM05D007115 ORTHO05D008923 2.6e-44 183.3 204 55.9
Zm00001eb334110 Zea mays HOM05D007115 ORTHO05D008923 6.5e-40 168.7 148 57.4
Psat5g051920 Pisum sativum HOM05D007115 ORTHO05D008923 1.6e-38 164.1 152 61.8
Os01g0102300 Oryza sativa ssp. japonica HOM05D007115 ORTHO05D008923 1.4e-37 161.0 175 49.7
COL.COLO4_28141 Corchorus olitorius HOM05D007115 ORTHO05D008923 1.8e-34 150.6 96 74.0
arahy.Tifrunner.gnm1.ann1.BUY811 Arachis hypogaea HOM05D007115 ORTHO05D008923 5.4e-34 149.1 134 64.9
AUR62029602 Chenopodium quinoa HOM05D007115 ORTHO05D008923 9.2e-34 148.3 95 69.5
Pp3c6_23090 Physcomitrium patens HOM05D007115 ORTHO05D008923 1.2e-33 147.9 197 43.7
MBI11_g41395_MAGBIO Magnolia biondii HOM05D007115 ORTHO05D008923 1.3e-32 144.4 131 57.3
SMO356G0600 Selaginella moellendorffii HOM05D007115 ORTHO05D008923 1.5e-31 141.0 155 49.0
Sed0002696 Sechium edule HOM05D007115 ORTHO05D008923 1.6e-30 137.5 120 60.8
SEGI_00544 Sequoiadendron giganteum HOM05D007115 ORTHO05D008923 6.6e-24 115.5 112 53.6
Actinidia18342 Actinidia chinensis HOM05D007115 ORTHO05D008923 1.5e-20 104.4 64 73.4
ATR0405G001 Amborella trichopoda HOM05D007115 ORTHO05D008923 1.7e-19 100.9 62 77.4
FAN18G1815 Fragaria x ananassa HOM05D007115 ORTHO05D008923 1.1e-18 98.2 61 82.0
Ah.02g114850 Amaranthus hybridus HOM05D007115 ORTHO05D008923 2.4e-18 97.1 131 45.8
FAN13G2062 Fragaria x ananassa HOM05D007115 ORTHO05D008923 1.2e-17 94.7 63 81.0
AL6G46780 Arabidopsis lyrata HOM05D007115 ORTHO05D008923 1.6e-14 84.3 95 51.6
Actinidia18341 Actinidia chinensis HOM05D000804 ORTHO05D000989 4.7e-14 82.8 102 49.0
Sabra12G0072200 Salix brachista HOM05D007115 ORTHO05D008923 4.9e-11 72.8 61 60.7
FAN04G0070 Fragaria x ananassa HOM05D007115 ORTHO05D008923 4.1e-10 69.7 47 76.6
MCO03G440 Micromonas commoda HOM05D007115 ORTHO05D008923 6.6e-08 62.4 160 28.8


User provided reference genes

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