Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G3488 Fragaria x ananassa HOM05D005559 ORTHO05D006957 2.9e-105 385.2 187 100.0
FvH4_5g26130 Fragaria vesca HOM05D005559 ORTHO05D006957 5.3e-59 231.5 183 68.9
FAN18G3125 Fragaria x ananassa HOM05D005559 ORTHO05D006957 1.2e-58 230.3 183 68.3
FAN08G1655 Fragaria x ananassa HOM05D005559 ORTHO05D006957 1.0e-46 190.7 164 65.2
FAN13G1149 Fragaria x ananassa HOM05D005559 ORTHO05D006957 5.9e-42 174.9 151 64.2
RcHm_v2.0_Chr7g0216661 Rosa chinensis HOM05D005559 ORTHO05D006957 1.6e-39 166.8 151 60.3
MD06G1004300 Malus domestica HOM05D005559 ORTHO05D006957 2.3e-38 162.9 151 58.9
Prupe.5G005700 Prunus persica HOM05D005559 ORTHO05D006957 2.3e-38 162.9 151 58.9
Cfa014135 Carpinus fangiana HOM05D005559 ORTHO05D006957 6.8e-38 161.4 151 58.9
CiPaw.07G133700 Carya illinoinensis HOM05D005559 ORTHO05D006957 4.4e-37 158.7 151 56.3
MBI01_g28397_MAGBIO Magnolia biondii HOM05D005559 ORTHO05D006957 5.7e-37 158.3 152 55.9
Haze_22861 Corylus avellana HOM05D005559 ORTHO05D006957 7.5e-37 157.9 151 58.3
QL02p015726 Quercus lobata HOM05D005559 ORTHO05D006957 7.5e-37 157.9 151 57.0
Nn5g31046 Nelumbo nucifera HOM05D005559 ORTHO05D006957 9.8e-37 157.5 152 55.9
PGR031G1403 Punica granatum HOM05D005559 ORTHO05D006957 1.3e-36 157.1 152 55.9
Gohir.D01G087100 Gossypium hirsutum HOM05D005559 ORTHO05D006957 1.7e-36 156.8 151 57.0
Gorai.002G112800 Gossypium raimondii HOM05D005559 ORTHO05D006957 1.7e-36 156.8 151 57.0
GSVIVG01013425001 Vitis vinifera HOM05D005559 ORTHO05D006957 2.2e-36 156.4 151 53.6
Manes.18G002100 Manihot esculenta HOM05D005559 ORTHO05D006957 2.9e-36 156.0 151 57.6
Thecc.08G100000 Theobroma cacao HOM05D005559 ORTHO05D006957 3.7e-36 155.6 151 57.0
TAR381G1403 Trochodendron aralioides HOM05D005559 ORTHO05D006957 6.4e-36 154.8 152 53.9
Cpa.g.sc26.16 Carica papaya HOM05D005559 ORTHO05D006957 1.1e-35 154.1 151 57.0
Gohir.A01G102000 Gossypium hirsutum HOM05D005559 ORTHO05D006957 1.8e-35 153.3 151 55.6
Dinv13752 Davidia involucrata HOM05D005559 ORTHO05D006957 2.4e-35 152.9 151 54.3
Duzib116G0447 Durio zibethinus HOM05D005559 ORTHO05D006957 2.4e-35 152.9 151 55.0
CSS0038076 Camellia sinensis var. sinensis HOM05D005559 ORTHO05D006957 3.2e-35 152.5 151 55.0
Aqoxy6G02983 Aquilegia oxysepala HOM05D005559 ORTHO05D006957 4.1e-35 152.1 148 57.4
DCAR_023024 Daucus carota HOM05D005559 ORTHO05D006957 4.1e-35 152.1 151 53.0
MSTRG.24514 Avicennia marina HOM05D005559 ORTHO05D006957 7.0e-35 151.4 151 55.0
Phvul.001G000700 Phaseolus vulgaris HOM05D005559 ORTHO05D006957 7.0e-35 151.4 151 53.0
SalBow6G6240 Salvia bowleyana HOM05D005559 ORTHO05D006957 7.0e-35 151.4 151 54.3
ClCG11G019030 Citrullus lanatus HOM05D005559 ORTHO05D006957 9.2e-35 151.0 151 53.6
VMungo0647G1813 Vigna mungo HOM05D005559 ORTHO05D006957 9.2e-35 151.0 151 54.3
Actinidia17075 Actinidia chinensis HOM05D005559 ORTHO05D006957 1.6e-34 150.2 151 52.3
Ciclev10001002m.g Citrus clementina HOM05D005559 ORTHO05D006957 1.6e-34 150.2 151 53.6
vmacro21769 Vaccinium macrocarpon HOM05D005559 ORTHO05D006957 2.0e-34 149.8 139 56.1
Medtr1g026540 Medicago truncatula HOM05D005559 ORTHO05D006957 2.7e-34 149.4 151 53.0
CANSAT25G2267 Cannabis sativa HOM05D005559 ORTHO05D006957 3.5e-34 149.1 154 52.6
Lj4A5T46 Lonicera japonica HOM05D005559 ORTHO05D006957 3.5e-34 149.1 152 53.9
Oeu035757.2 Olea europaea HOM05D005559 ORTHO05D006957 3.5e-34 149.1 82 80.5
AUR62024097 Chenopodium quinoa HOM05D005559 ORTHO05D006957 4.6e-34 148.7 152 52.6
EL10Ac1g01873 Beta vulgaris HOM05D005559 ORTHO05D006957 5.9e-34 148.3 151 53.0
Sed0000545 Sechium edule HOM05D005559 ORTHO05D006957 5.9e-34 148.3 151 53.6
TPR.G26383 Trifolium pratense HOM05D005559 ORTHO05D006957 5.9e-34 148.3 151 52.3
Potri.002G005100 Populus trichocarpa HOM05D005559 ORTHO05D006957 7.8e-34 147.9 151 55.0
PSO675G8223 Papaver somniferum HOM05D005559 ORTHO05D006957 1.0e-33 147.5 152 53.3
TWI56G0785 Tripterygium wilfordii HOM05D005559 ORTHO05D006957 1.0e-33 147.5 151 53.6
Psat0s1355g0040 Pisum sativum HOM05D005559 ORTHO05D006957 1.3e-33 147.1 151 51.0
Atru.chr13.62 Acer truncatum HOM05D005559 ORTHO05D006957 1.7e-33 146.7 158 51.9
Migut.N02985 Erythranthe guttata HOM05D005559 ORTHO05D006957 1.7e-33 146.7 151 54.3
Cc10_g00280 Coffea canephora HOM05D005559 ORTHO05D006957 2.3e-33 146.4 151 54.3
COL.COLO4_12311 Corchorus olitorius HOM05D005559 ORTHO05D006957 2.3e-33 146.4 151 54.3
PSO541G1621 Papaver somniferum HOM05D005559 ORTHO05D006957 2.3e-33 146.4 152 52.6
SGA_v2.0_scaffold227G43160 Striga asiatica HOM05D005559 ORTHO05D006957 5.0e-33 145.2 151 55.0
ATR0605G082 Amborella trichopoda HOM05D005559 ORTHO05D006957 1.1e-32 144.1 151 51.7
CsaV3_4G037630 Cucumis sativus L. HOM05D005559 ORTHO05D006957 1.1e-32 144.1 151 50.3
MELO3C017057.2 Cucumis melo HOM05D005559 ORTHO05D006957 1.5e-32 143.7 151 51.7
Ca_13494_v3 Cicer arietinum L. HOM05D005559 ORTHO05D006957 1.9e-32 143.3 84 76.2
Ca_30151_v3 Cicer arietinum L. HOM05D005559 ORTHO05D006957 1.9e-32 143.3 84 76.2
Eucgr.F01812 Eucalyptus grandis HOM05D005559 ORTHO05D006957 1.9e-32 143.3 152 50.0
Lalb_Chr01g0008311 Lupinus albus HOM05D005559 ORTHO05D006957 1.9e-32 143.3 151 51.7
Sc26g0004750 Simmondsia chinensis HOM05D005559 ORTHO05D006957 1.9e-32 143.3 151 51.7
SEGI_39851 Sequoiadendron giganteum HOM05D005559 ORTHO05D006957 2.5e-32 142.9 151 51.0
Sabra02G0003500 Salix brachista HOM05D005559 ORTHO05D006957 5.6e-32 141.7 85 76.5
Ah.01g024690 Amaranthus hybridus HOM05D005559 ORTHO05D006957 7.3e-32 141.4 152 51.3
CAN.G1330.11 Capsicum annuum HOM05D005559 ORTHO05D006957 7.3e-32 141.4 151 51.0
Nitab4.5_0001756g0040 Nicotiana tabacum HOM05D005559 ORTHO05D006957 9.5e-32 141.0 152 51.3
Glyma.14G223900 Glycine max HOM05D005559 ORTHO05D006957 2.1e-31 139.8 151 49.7
Glyma.17G262100 Glycine max HOM05D005559 ORTHO05D006957 2.8e-31 139.4 151 51.0
unitig_22.g5730 Utricularia gibba HOM05D005559 ORTHO05D006957 3.6e-31 139.0 151 50.3
Aa31LG9G13560 Aethionema arabicum HOM05D005559 ORTHO05D006957 4.7e-31 138.7 152 52.0
SEGI_07319 Sequoiadendron giganteum HOM05D005559 ORTHO05D006957 4.7e-31 138.7 83 74.7
arahy.Tifrunner.gnm1.ann1.MFDH98 Arachis hypogaea HOM05D005559 ORTHO05D006957 6.2e-31 138.3 152 50.0
Peaxi162Scf00680g00636 Petunia axillaris HOM05D005559 ORTHO05D006957 8.0e-31 137.9 151 51.0
CSS0028031 Camellia sinensis var. sinensis HOM05D005559 ORTHO05D006957 1.0e-30 137.5 85 71.8
Ah.03g148440 Amaranthus hybridus HOM05D005559 ORTHO05D006957 1.4e-30 137.1 160 48.8
Os02g0715200 Oryza sativa ssp. japonica HOM05D005559 ORTHO05D006957 1.8e-30 136.7 152 50.7
PGSC0003DMG400009923 Solanum tuberosum HOM05D005559 ORTHO05D006957 4.0e-30 135.6 151 50.3
Lj5g0020249 Lotus japonicus HOM05D005559 ORTHO05D006957 5.2e-30 135.2 151 50.3
THA.LOC104806872 Tarenaya hassleriana HOM05D005559 ORTHO05D006957 6.8e-30 134.8 152 50.7
ECA238G3676 Erigeron canadensis HOM05D005559 ORTHO05D006957 8.9e-30 134.4 151 50.3
Thhalv10016587m.g Eutrema salsugineum HOM05D005559 ORTHO05D006957 8.9e-30 134.4 151 50.3
FvH4_5g26170 Fragaria vesca HOM05D005559 ORTHO05D006957 8.9e-30 134.4 63 95.2
Lsat_1_v5_gn_2_3240 Lactuca sativa HOM05D005559 ORTHO05D006957 8.9e-30 134.4 152 50.0
HPP92_020534 Vanilla planifolia HOM05D005559 ORTHO05D006957 8.9e-30 134.4 151 49.0
C03p21990 Brassica napus HOM05D005559 ORTHO05D006957 1.2e-29 134.0 154 48.1
BolC3t14582H Brassica oleracea HOM05D005559 ORTHO05D006957 1.2e-29 134.0 154 48.1
Peaxi162Scf00269g00414 Petunia axillaris HOM05D005559 ORTHO05D006957 1.2e-29 134.0 85 70.6
Sabra02G0003600 Salix brachista HOM05D005559 ORTHO05D006957 1.2e-29 134.0 152 50.0
BcaC01g05830 Brassica carinata HOM05D005559 ORTHO05D006957 2.0e-29 133.3 152 49.3
A03p18820 Brassica napus HOM05D005559 ORTHO05D006957 3.4e-29 132.5 151 48.3
BraA03t11142Z Brassica rapa HOM05D005559 ORTHO05D006957 3.4e-29 132.5 151 48.3
CARHR127640 Cardamine hirsuta HOM05D005559 ORTHO05D006957 3.4e-29 132.5 151 49.0
Solyc04g082750.3 Solanum lycopersicum HOM05D005559 ORTHO05D006957 4.4e-29 132.1 151 49.7
AL4G29300 Arabidopsis lyrata HOM05D005559 ORTHO05D006957 7.5e-29 131.3 151 50.3
FvH4_5g26160 Fragaria vesca HOM05D005559 ORTHO05D006957 7.5e-29 131.3 63 96.8
Sopen04g036390 Solanum pennellii HOM05D005559 ORTHO05D006957 7.5e-29 131.3 151 49.7
Carub.0004s1526 Capsella rubella HOM05D005559 ORTHO05D006957 1.3e-28 130.6 151 49.0
BcaB01g03926 Brassica carinata HOM05D005559 ORTHO05D006957 1.7e-28 130.2 152 49.3
AT2G33630 Arabidopsis thaliana HOM05D005559 ORTHO05D006957 2.2e-28 129.8 151 48.3
Sp4g15980 Schrenkiella parvula HOM05D005559 ORTHO05D006957 2.2e-28 129.8 151 49.0
HanXRQChr06g0185311 Helianthus annuus HOM05D005559 ORTHO05D006957 6.4e-28 128.3 149 49.0
Hund01836 Selenicereus undatus HOM05D005559 ORTHO05D006957 6.4e-28 128.3 152 48.0
Zm00001eb252680 Zea mays HOM05D005559 ORTHO05D006957 6.4e-28 128.3 151 49.0
AUR62035169 Chenopodium quinoa HOM05D005559 ORTHO05D006957 6.0e-26 121.7 85 64.7
PSO675G8730 Papaver somniferum HOM05D005559 ORTHO05D006957 8.6e-25 117.9 83 68.7
PSO541G1320 Papaver somniferum HOM05D005559 ORTHO05D006957 1.1e-24 117.5 80 68.8
SMO147G0007 Selaginella moellendorffii HOM05D005559 ORTHO05D006957 4.7e-23 112.1 152 39.5
Rhsim06G0003400 Rhododendron simsii HOM05D005559 ORTHO05D006957 2.3e-22 109.8 62 72.6
AagrBONN_evm.TU.Sc2ySwM_368.1400 Anthoceros agrestis HOM05D005559 ORTHO05D006957 5.2e-22 108.6 80 61.2
AL2G36580 Arabidopsis lyrata HOM05D005559 ORTHO05D006957 2.2e-20 103.2 81 58.0
Aa31LG4G6530 Aethionema arabicum HOM05D005559 ORTHO05D006957 6.4e-20 101.7 79 57.0
CDE05G0939 Ceratophyllum demersum HOM05D005559 ORTHO05D006957 1.9e-19 100.1 69 65.2
BcaC08g47151 Brassica carinata HOM05D005559 ORTHO05D006957 7.1e-19 98.2 81 54.3
BcaC08g47244 Brassica carinata HOM05D005559 ORTHO05D006957 3.5e-18 95.9 77 57.1
Carub.0002s2336 Capsella rubella HOM05D005559 ORTHO05D006957 4.6e-18 95.5 81 54.3
BolC6t40094H Brassica oleracea HOM05D005559 ORTHO05D006957 6.0e-18 95.1 77 57.1
A07p42110 Brassica napus HOM05D005559 ORTHO05D006957 7.8e-18 94.7 77 54.5
C06p50680 Brassica napus HOM05D005559 ORTHO05D006957 1.3e-17 94.0 77 55.8
Thhalv10018454m.g Eutrema salsugineum HOM05D005559 ORTHO05D006957 3.9e-17 92.4 79 51.9
BraA07t31740Z Brassica rapa HOM05D005559 ORTHO05D006957 5.1e-17 92.0 77 54.5
Sp5g31610 Schrenkiella parvula HOM05D005559 ORTHO05D006957 5.1e-17 92.0 79 51.9
Cre16.g678773 Chlamydomonas reinhardtii HOM05D005559 ORTHO05D006957 9.2e-11 71.2 99 41.4
Cre12.g518650 Chlamydomonas reinhardtii HOM05D002028 ORTHO05D002474 1.7e-09 67.0 75 41.3
BcaC07g40831 Brassica carinata HOM05D002028 ORTHO05D002474 2.5e-08 63.2 101 37.6
C08p38270 Brassica napus HOM05D002028 ORTHO05D002474 3.3e-08 62.8 101 37.6
COL.COLO4_21163 Corchorus olitorius HOM05D002028 ORTHO05D002474 1.2e-07 60.8 116 36.2
THA.LOC104803571 Tarenaya hassleriana HOM05D002028 ORTHO05D002474 1.2e-07 60.8 119 37.0
AL4G18840 Arabidopsis lyrata HOM05D002028 ORTHO05D002474 2.1e-07 60.1 79 40.5
A09p55330 Brassica napus HOM05D002028 ORTHO05D002474 2.1e-07 60.1 101 36.6
BolC8t51402H Brassica oleracea HOM05D002028 ORTHO05D002474 2.1e-07 60.1 101 36.6
BraA09t40936Z Brassica rapa HOM05D002028 ORTHO05D002474 2.1e-07 60.1 101 36.6
AT2G26260 Arabidopsis thaliana HOM05D002028 ORTHO05D002474 2.8e-07 59.7 79 40.5
BcaB08g35278 Brassica carinata HOM05D002028 ORTHO05D002474 2.8e-07 59.7 118 34.7
Carub.0004s0612 Capsella rubella HOM05D002028 ORTHO05D002474 2.8e-07 59.7 79 40.5
Cre09.g401500 Chlamydomonas reinhardtii HOM05D005559 ORTHO05D139335 3.6e-07 59.3 63 44.4
MSTRG.13980 Avicennia marina HOM05D002028 ORTHO05D002474 4.7e-07 58.9 118 35.6
Aa31LG5G9540 Aethionema arabicum HOM05D002028 ORTHO05D002474 6.2e-07 58.5 118 34.7
Sp4g06500 Schrenkiella parvula HOM05D002028 ORTHO05D002474 6.2e-07 58.5 118 33.9
AT1G47290 Arabidopsis thaliana HOM05D002028 ORTHO05D002474 8.1e-07 58.2 103 35.9
SalBow8G3331 Salvia bowleyana HOM05D002028 ORTHO05D002474 8.1e-07 58.2 118 33.9
AL1G53470 Arabidopsis lyrata HOM05D002028 ORTHO05D002474 1.4e-06 57.4 103 35.0
Thhalv10001949m.g Eutrema salsugineum HOM05D002028 ORTHO05D002474 1.4e-06 57.4 118 33.9
Sp1g34440 Schrenkiella parvula HOM05D002028 ORTHO05D002474 1.4e-06 57.4 101 35.6
Ciclev10007884m.g Citrus clementina HOM05D002028 ORTHO05D002474 2.4e-06 56.6 81 40.7
TWI34G0285 Tripterygium wilfordii HOM05D002028 ORTHO05D002474 2.4e-06 56.6 79 39.2
BcaB07g33844 Brassica carinata HOM05D002028 ORTHO05D002474 3.1e-06 56.2 119 32.8
Eucgr.C00745 Eucalyptus grandis HOM05D002028 ORTHO05D002474 3.1e-06 56.2 121 36.4
Potri.006G218400 Populus trichocarpa HOM05D002028 ORTHO05D002474 4.0e-06 55.8 118 32.2
SEGI_01118 Sequoiadendron giganteum HOM05D002028 ORTHO05D002474 5.2e-06 55.5 79 38.0
MSTRG.25846 Avicennia marina HOM05D002028 ORTHO05D002474 6.8e-06 55.1 117 32.5
BcaC08g42942 Brassica carinata HOM05D002028 ORTHO05D002474 6.8e-06 55.1 117 32.5
A10p06480 Brassica napus HOM05D002028 ORTHO05D002474 6.8e-06 55.1 117 32.5
C06p01850 Brassica napus HOM05D002028 ORTHO05D002474 6.8e-06 55.1 117 32.5
BolC6t35312H Brassica oleracea HOM05D002028 ORTHO05D002474 6.8e-06 55.1 117 32.5
BraA10t42908Z Brassica rapa HOM05D002028 ORTHO05D002474 6.8e-06 55.1 117 32.5
Mapoly0001s0030 Marchantia polymorpha HOM05D002028 ORTHO05D002474 6.8e-06 55.1 98 33.7
unitig_748.g8197 Utricularia gibba HOM05D002028 ORTHO05D002474 6.8e-06 55.1 79 38.0
CiPaw.04G076800 Carya illinoinensis HOM05D002028 ORTHO05D002474 8.9e-06 54.7 117 32.5
Ca_15805_v3 Cicer arietinum L. HOM05D002028 ORTHO05D002474 8.9e-06 54.7 81 39.5
Duzib150G1690 Durio zibethinus HOM05D002028 ORTHO05D002474 8.9e-06 54.7 121 33.9
Lalb_Chr08g0244671 Lupinus albus HOM05D002028 ORTHO05D002474 8.9e-06 54.7 115 35.7


User provided reference genes

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