Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G2619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1496.1 730 100.0
FAN18G3428 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1496.1 730 100.0
FvH4_5g11490 Fragaria vesca HOM05D003895 ORTHO05D004723 0.0e+00 1494.9 730 99.9
FAN04G2440 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1480.3 728 98.8
FAN08G0955 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1477.2 728 98.4
RcHm_v2.0_Chr7g0186311 Rosa chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1457.2 728 97.0
Prupe.5G126000 Prunus persica HOM05D003895 ORTHO05D004723 0.0e+00 1410.6 732 93.2
MD06G1113100 Malus domestica HOM05D003895 ORTHO05D004723 0.0e+00 1399.4 732 92.1
MD14G1134200 Malus domestica HOM05D003895 ORTHO05D004723 0.0e+00 1385.9 732 90.7
CANSAT54G0301 Cannabis sativa HOM05D003895 ORTHO05D004723 0.0e+00 1360.5 731 87.8
PGR042G2513 Punica granatum HOM05D003895 ORTHO05D004723 0.0e+00 1334.3 732 86.1
QL02p029300 Quercus lobata HOM05D003895 ORTHO05D004723 0.0e+00 1333.2 730 87.0
Manes.02G005900 Manihot esculenta HOM05D003895 ORTHO05D004723 0.0e+00 1332.4 730 86.4
Thecc.03G303200 Theobroma cacao HOM05D003895 ORTHO05D004723 0.0e+00 1330.9 731 86.3
Eucgr.E01025 Eucalyptus grandis HOM05D003895 ORTHO05D004723 0.0e+00 1330.5 728 86.7
CiPaw.11G115900 Carya illinoinensis HOM05D003895 ORTHO05D004723 0.0e+00 1328.9 731 86.2
Migut.E00651 Erythranthe guttata HOM05D003895 ORTHO05D004723 0.0e+00 1328.5 729 85.0
Gorai.004G131300 Gossypium raimondii HOM05D003895 ORTHO05D004723 0.0e+00 1327.8 729 86.1
CSS0003453 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 0.0e+00 1327.4 730 86.0
Cfa011961 Carpinus fangiana HOM05D003895 ORTHO05D004723 0.0e+00 1325.8 732 86.3
Gohir.D08G124600 Gossypium hirsutum HOM05D003895 ORTHO05D004723 0.0e+00 1323.9 729 86.0
TWI60G1173 Tripterygium wilfordii HOM05D003895 ORTHO05D004723 0.0e+00 1323.5 729 86.0
Potri.003G143700 Populus trichocarpa HOM05D003895 ORTHO05D004723 0.0e+00 1322.4 729 85.9
Ciclev10019024m.g Citrus clementina HOM05D003895 ORTHO05D004723 0.0e+00 1320.8 734 85.1
Cpa.g.sc15.11 Carica papaya HOM05D003895 ORTHO05D004723 0.0e+00 1320.1 740 84.9
MELO3C005756.2 Cucumis melo HOM05D003895 ORTHO05D004723 0.0e+00 1320.1 728 86.7
Oeu009988.1 Olea europaea HOM05D003895 ORTHO05D004723 0.0e+00 1319.3 728 85.0
Ciclev10024991m.g Citrus clementina HOM05D003895 ORTHO05D004723 0.0e+00 1317.8 734 85.0
CSS0024936 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 0.0e+00 1317.0 730 85.5
Potri.001G087400 Populus trichocarpa HOM05D003895 ORTHO05D004723 0.0e+00 1316.2 729 85.7
Aqoxy2G01051 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 0.0e+00 1315.8 732 85.1
Actinidia04389 Actinidia chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1315.4 728 85.4
SalBow2G2362 Salvia bowleyana HOM05D003895 ORTHO05D004723 0.0e+00 1315.1 728 85.3
Cc05_g02370 Coffea canephora HOM05D003895 ORTHO05D004723 0.0e+00 1314.7 730 85.5
PGSC0003DMG400012128 Solanum tuberosum HOM05D003895 ORTHO05D004723 0.0e+00 1314.3 730 85.3
MSTRG.13762 Avicennia marina HOM05D003895 ORTHO05D004723 0.0e+00 1313.9 732 85.1
Duzib068G0704 Durio zibethinus HOM05D003895 ORTHO05D004723 0.0e+00 1312.7 731 85.5
Ca_17453_v3 Cicer arietinum L. HOM05D003895 ORTHO05D004723 0.0e+00 1312.4 728 85.2
Psat7g023560 Pisum sativum HOM05D003895 ORTHO05D004723 0.0e+00 1311.2 730 85.5
Rhsim07G0079800 Rhododendron simsii HOM05D003895 ORTHO05D004723 0.0e+00 1311.2 731 85.2
Nitab4.5_0002439g0120 Nicotiana tabacum HOM05D003895 ORTHO05D004723 0.0e+00 1310.8 730 85.2
Solyc08g082830.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 0.0e+00 1310.4 730 84.9
Glyma.05G219500 Glycine max HOM05D003895 ORTHO05D004723 0.0e+00 1310.0 730 85.5
Lalb_Chr16g0390761 Lupinus albus HOM05D003895 ORTHO05D004723 0.0e+00 1308.9 730 84.8
DCAR_006502 Daucus carota HOM05D003895 ORTHO05D004723 0.0e+00 1308.5 730 84.4
TPR.G3395 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1307.7 730 85.1
Medtr8g099885 Medicago truncatula HOM05D003895 ORTHO05D004723 0.0e+00 1307.4 730 85.5
Nn3g20296 Nelumbo nucifera HOM05D003895 ORTHO05D004723 0.0e+00 1307.0 728 84.6
Lj4g0018300 Lotus japonicus HOM05D003895 ORTHO05D004723 0.0e+00 1306.2 731 84.5
Nitab4.5_0002367g0210 Nicotiana tabacum HOM05D003895 ORTHO05D004723 0.0e+00 1304.3 724 85.6
COL.COLO4_10753 Corchorus olitorius HOM05D003895 ORTHO05D004723 0.0e+00 1303.5 728 85.7
PSO170G0459 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1303.5 733 84.4
Haze_09120 Corylus avellana HOM05D003895 ORTHO05D004723 0.0e+00 1302.7 747 84.1
Cc08_g16460 Coffea canephora HOM05D003895 ORTHO05D004723 0.0e+00 1301.6 728 84.6
TPR.G18245 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1301.6 730 85.2
TAR629G1064 Trochodendron aralioides HOM05D003895 ORTHO05D004723 0.0e+00 1301.2 732 84.3
Sabra01G0063700 Salix brachista HOM05D003895 ORTHO05D004723 0.0e+00 1300.8 728 85.3
arahy.Tifrunner.gnm1.ann1.68E5M7 Arachis hypogaea HOM05D003895 ORTHO05D004723 0.0e+00 1300.4 729 84.5
Aa31LG2G1550 Aethionema arabicum HOM05D003895 ORTHO05D004723 0.0e+00 1298.5 728 85.2
Sabra03G0104100 Salix brachista HOM05D003895 ORTHO05D004723 0.0e+00 1297.3 772 81.2
CAN.G567.61 Capsicum annuum HOM05D003895 ORTHO05D004723 0.0e+00 1297.0 731 84.0
vmacro13870 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1296.2 773 80.7
ECA240G1010 Erigeron canadensis HOM05D003895 ORTHO05D004723 0.0e+00 1294.6 729 84.8
Lj4g0016220 Lotus japonicus HOM05D003895 ORTHO05D004723 0.0e+00 1294.6 731 83.4
Hund14202 Selenicereus undatus HOM05D003895 ORTHO05D004723 0.0e+00 1293.9 731 84.0
Phvul.002G328900 Phaseolus vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1291.6 730 84.0
Sopen08g031060 Solanum pennellii HOM05D003895 ORTHO05D004723 0.0e+00 1291.6 697 86.8
HanXRQChr03g0083671 Helianthus annuus HOM05D003895 ORTHO05D004723 0.0e+00 1290.4 729 84.5
HanXRQChr06g0166321 Helianthus annuus HOM05D003895 ORTHO05D004723 0.0e+00 1289.2 728 84.2
THA.LOC104823616 Tarenaya hassleriana HOM05D003895 ORTHO05D004723 0.0e+00 1288.5 728 84.2
Thhalv10011266m.g Eutrema salsugineum HOM05D003895 ORTHO05D004723 0.0e+00 1287.3 728 83.7
arahy.Tifrunner.gnm1.ann1.M62N24 Arachis hypogaea HOM05D003895 ORTHO05D004723 0.0e+00 1285.4 723 84.2
Sp1g40750 Schrenkiella parvula HOM05D003895 ORTHO05D004723 0.0e+00 1283.1 728 83.8
vmacro10679 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1279.2 778 79.0
vmacro22441 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1279.2 778 79.0
ClCG01G001820 Citrullus lanatus HOM05D003895 ORTHO05D004723 0.0e+00 1273.1 826 76.4
Carub.0001s4358 Capsella rubella HOM05D003895 ORTHO05D004723 0.0e+00 1272.3 728 83.1
Oeu059576.4 Olea europaea HOM05D003895 ORTHO05D004723 0.0e+00 1271.1 782 78.8
BolC6t36080H Brassica oleracea HOM05D003895 ORTHO05D004723 0.0e+00 1267.7 728 82.8
VMungo0251G3777 Vigna mungo HOM05D003895 ORTHO05D004723 0.0e+00 1267.7 729 83.0
GSVIVG01019608001 Vitis vinifera HOM05D003895 ORTHO05D004723 0.0e+00 1267.3 729 82.6
BcaC01g01456 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1266.9 729 83.0
BraA06t23255Z Brassica rapa HOM05D003895 ORTHO05D004723 0.0e+00 1266.5 728 83.0
BcaB07g33238 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1265.8 729 83.4
BcaB04g17002 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1265.4 729 83.3
A06p00400 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1265.0 728 82.8
AT1G55090 Arabidopsis thaliana HOM05D003895 ORTHO05D004723 0.0e+00 1264.6 728 82.7
A08p01020 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1263.8 729 82.6
AL1G63080 Arabidopsis lyrata HOM05D003895 ORTHO05D004723 0.0e+00 1263.1 728 82.7
CARHR044680 Cardamine hirsuta HOM05D003895 ORTHO05D004723 0.0e+00 1261.9 728 82.4
C06p10070 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1261.1 728 82.6
BcaC08g43605 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1260.4 728 82.7
Psat7g023520 Pisum sativum HOM05D003895 ORTHO05D004723 0.0e+00 1256.1 728 81.9
EL10Ac5g12963 Beta vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1241.1 705 82.6
Lj2C160T5 Lonicera japonica HOM05D003895 ORTHO05D004723 0.0e+00 1236.9 730 81.6
Sc01g0010470 Simmondsia chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1235.7 663 87.8
AUR62029097 Chenopodium quinoa HOM05D003895 ORTHO05D004723 0.0e+00 1233.4 734 80.2
Peaxi162Scf00074g00431 Petunia axillaris HOM05D003895 ORTHO05D004723 0.0e+00 1233.0 730 81.4
Lsat_1_v5_gn_6_83601 Lactuca sativa HOM05D003895 ORTHO05D004723 0.0e+00 1228.4 728 82.1
FAN13G0619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1226.8 728 84.3
BolC3t21537H Brassica oleracea HOM05D003895 ORTHO05D004723 0.0e+00 1225.3 741 80.2
C03p92220 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1224.5 741 80.0
AUR62015016 Chenopodium quinoa HOM05D003895 ORTHO05D004723 0.0e+00 1223.0 748 78.6
PSO339G2482 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1221.8 733 79.3
BraA08t32154Z Brassica rapa HOM05D003895 ORTHO05D004723 0.0e+00 1221.1 740 79.9
Glyma.08G025800 Glycine max HOM05D003895 ORTHO05D004723 0.0e+00 1213.7 659 86.9
PSO017G1958 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1206.4 733 79.8
TPR.G3413 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1201.0 720 79.2
CsaV3_5G001970 Cucumis sativus L. HOM05D003895 ORTHO05D004723 0.0e+00 1199.9 663 86.7
SGA_v2.0_scaffold295G47513 Striga asiatica HOM05D003895 ORTHO05D004723 0.0e+00 1192.9 728 78.4
unitig_21.g20891 Utricularia gibba HOM05D003895 ORTHO05D004723 0.0e+00 1190.3 733 77.6
MBI02_g10555_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 0.0e+00 1164.4 739 74.4
Zm00001eb094700 Zea mays HOM05D003895 ORTHO05D004723 0.0e+00 1157.1 731 74.7
Sed0021355 Sechium edule HOM05D003895 ORTHO05D004723 0.0e+00 1150.6 616 88.5
EL10Ac5g12472 Beta vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1143.3 696 77.4
HPP92_025338 Vanilla planifolia HOM05D003895 ORTHO05D004723 0.0e+00 1139.0 705 75.6
ATR1098G082 Amborella trichopoda HOM05D003895 ORTHO05D004723 0.0e+00 1131.7 732 73.6
Hma1.2p1_1835F.1_g304665 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 0.0e+00 1129.0 616 86.2
Dinv34692 Davidia involucrata HOM05D003895 ORTHO05D004723 0.0e+00 1098.2 585 88.2
SEGI_31460 Sequoiadendron giganteum HOM05D003895 ORTHO05D004723 0.0e+00 1097.4 733 71.4
Manes.02G005800 Manihot esculenta HOM05D003895 ORTHO05D004723 2.5e-311 1071.6 706 72.8
Ah.12g052950 Amaranthus hybridus HOM05D003895 ORTHO05D004723 1.0e-310 1069.7 750 71.5
Mapoly0035s0052 Marchantia polymorpha HOM05D003895 ORTHO05D004723 5.3e-288 994.2 735 66.1
AUR62019884 Chenopodium quinoa HOM05D003895 ORTHO05D004723 2.2e-286 988.8 701 69.9
SMO174G0028 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 1.2e-284 983.0 730 64.5
CBR_g19728 Chara braunii HOM05D003895 ORTHO05D004723 3.6e-284 981.5 726 64.2
AagrBONN_evm.TU.Sc2ySwM_228.4970 Anthoceros agrestis HOM05D003895 ORTHO05D004723 5.5e-261 904.4 655 66.0
MCO17G006 Micromonas commoda HOM05D003895 ORTHO05D004723 1.7e-257 892.9 690 60.7
Gohir.A08G111660 Gossypium hirsutum HOM05D003895 ORTHO05D004723 6.3e-257 891.0 503 85.3
Pp3c17_21910 Physcomitrium patens HOM05D003895 ORTHO05D004723 3.1e-256 888.6 667 63.7
Os07g0167100 Oryza sativa ssp. japonica HOM05D003895 ORTHO05D004723 3.2e-253 878.6 569 74.2
SMO358G0326 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 3.7e-249 865.1 697 59.5
PRCOL_00000896 Prasinoderma coloniale HOM05D003895 ORTHO05D004723 1.2e-236 823.5 705 57.6
Cre10.g435250 Chlamydomonas reinhardtii HOM05D003895 ORTHO05D004723 8.3e-233 810.8 783 53.6
Migut.E01630 Erythranthe guttata HOM05D003895 ORTHO05D004723 3.3e-229 798.9 502 75.1
Hma1.2p1_0077F.1_g039630 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 2.2e-217 759.6 417 85.1
Cfa024512 Carpinus fangiana HOM05D003895 ORTHO05D004723 8.4e-209 731.1 701 52.6
MBI02_g43672_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 1.4e-187 660.6 422 74.2
PSO210G1536 Papaver somniferum HOM05D003895 ORTHO05D004723 3.7e-164 582.8 377 74.5
Aqoxy456s001 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 1.2e-154 551.2 300 89.0
AUR62007020 Chenopodium quinoa HOM05D003895 ORTHO05D004723 2.8e-148 530.0 315 80.6
MBI05_g40947_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 1.6e-146 524.2 355 71.5
ECA246G1101 Erigeron canadensis HOM05D003895 ORTHO05D004723 2.9e-145 520.0 311 81.0
Haze_09105 Corylus avellana HOM05D003895 ORTHO05D004723 6.1e-143 512.3 359 74.7
MBI15_g06349_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 5.0e-129 466.1 340 67.6
MBI05_g43497_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 2.4e-115 420.6 297 69.0
SalBow2G1745 Salvia bowleyana HOM05D003895 ORTHO05D004723 3.0e-105 387.1 314 61.8
Gohir.A08G111640 Gossypium hirsutum HOM05D003895 ORTHO05D004723 1.6e-95 354.8 183 84.7
MBI05_g40946_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 2.2e-92 344.4 209 76.6
Psat7g023400 Pisum sativum HOM05D003895 ORTHO05D004723 1.1e-83 315.5 429 47.3
arahy.Tifrunner.gnm1.ann1.RT27P1 Arachis hypogaea HOM05D003895 ORTHO05D004723 3.8e-76 290.4 352 48.6
SalBow2G0791 Salvia bowleyana HOM05D003895 ORTHO05D004723 4.3e-72 276.9 168 73.2
BcaB04g17000 Brassica carinata HOM05D003895 ORTHO05D004723 1.8e-70 271.6 218 65.6
SalBow2G2695 Salvia bowleyana HOM05D003895 ORTHO05D004723 2.7e-66 257.7 216 59.7
BcaB04g16999 Brassica carinata HOM05D003895 ORTHO05D004723 5.1e-65 253.4 202 67.3
AagrBONN_evm.TU.Sc2ySwM_228.4951 Anthoceros agrestis HOM05D003895 ORTHO05D004723 7.4e-48 196.4 219 45.7
BcaB05g22068 Brassica carinata HOM05D003895 ORTHO05D004723 4.5e-45 187.2 131 63.4
BcaB04g17001 Brassica carinata HOM05D003895 ORTHO05D004723 2.2e-44 184.9 204 54.4
DCAR_006503 Daucus carota HOM05D001368 ORTHO05D003846 1.1e-43 182.6 177 57.6
BcaB01g00975 Brassica carinata HOM05D003895 ORTHO05D004723 7.2e-43 179.9 101 77.2
BcaB01g02352 Brassica carinata HOM05D003895 ORTHO05D004723 9.7e-32 142.9 80 75.0
BcaC01g01457 Brassica carinata HOM05D003895 ORTHO05D004723 2.4e-30 138.3 138 55.1
Sopen06g027550 Solanum pennellii HOM05D003895 ORTHO05D004723 8.5e-28 129.8 161 49.7
Nitab4.5_0000974g0050 Nicotiana tabacum HOM05D003895 ORTHO05D285369 8.3e-23 113.2 101 57.4
MBI15_g06350_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D000018 1.8e-22 112.1 61 77.0
Lj4g0022111 Lotus japonicus HOM05D019175 ORTHO05D018974 1.6e-21 109.0 60 85.0
CARHR260480 Cardamine hirsuta HOM05D003895 ORTHO05D004723 1.3e-20 105.9 181 37.6
CARHR106400 Cardamine hirsuta HOM05D003895 ORTHO05D004723 1.7e-20 105.5 181 37.6
Solyc06g071240.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 2.3e-20 105.1 127 52.0
CAN.G628.62 Capsicum annuum HOM05D003895 ORTHO05D004723 3.0e-17 94.7 108 50.9
Nitab4.5_0001308g0060 Nicotiana tabacum HOM05D003895 ORTHO05D282403 6.8e-17 93.6 111 48.6
BcaB04g16998 Brassica carinata HOM05D003895 ORTHO05D004723 5.7e-16 90.5 50 80.0
BcaC01g01459 Brassica carinata HOM05D003895 ORTHO05D004723 1.1e-11 76.3 87 49.4
Atru.chr9.1960 Acer truncatum HOM05D003895 ORTHO05D004723 1.5e-11 75.9 45 84.4
BcaC01g01463 Brassica carinata HOM05D003895 ORTHO05D004723 1.5e-11 75.9 69 58.0
Nitab4.5_0004376g0060 Nicotiana tabacum HOM05D003895 ORTHO05D286866 5.6e-11 73.9 50 74.0
Medtr3g108170 Medicago truncatula HOM05D003895 ORTHO05D260611 8.0e-10 70.1 264 28.4
Haze_24893 Corylus avellana HOM05D003698 ORTHO05D004320 1.3e-07 62.8 46 69.6
Glyma.17G110701 Glycine max HOM05D003895 ORTHO05D004723 1.3e-07 62.8 34 85.3
PGSC0003DMG400033059 Solanum tuberosum HOM05D003895 ORTHO05D004723 1.3e-07 62.8 40 70.0
Nitab4.5_0000050g0220 Nicotiana tabacum HOM05D003895 ORTHO05D285100 6.4e-07 60.5 44 75.0


User provided reference genes

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