Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G3415 Fragaria x ananassa HOM05D004120 ORTHO05D004951 2.6e-206 721.8 370 100.0
FvH4_5g21880 Fragaria vesca HOM05D004120 ORTHO05D004951 9.8e-206 719.9 370 99.7
FAN04G1856 Fragaria x ananassa HOM05D004120 ORTHO05D004951 3.3e-201 704.9 370 97.6
RcHm_v2.0_Chr7g0209431 Rosa chinensis HOM05D004120 ORTHO05D004951 1.2e-184 649.8 366 91.5
MD00G1220600 Malus domestica HOM05D004120 ORTHO05D004951 3.3e-169 598.6 369 83.7
Prupe.5G038500 Prunus persica HOM05D004120 ORTHO05D004951 1.6e-163 579.7 368 81.8
CiPaw.11G092700 Carya illinoinensis HOM05D004120 ORTHO05D004951 1.8e-151 539.7 369 78.0
GSVIVG01013166001 Vitis vinifera HOM05D004120 ORTHO05D004951 1.2e-150 537.0 369 77.5
Cfa012429 Carpinus fangiana HOM05D004120 ORTHO05D004951 1.5e-150 536.6 374 76.2
TAR629G2715 Trochodendron aralioides HOM05D004120 ORTHO05D004951 3.4e-150 535.4 372 77.4
CANSAT21G2618 Cannabis sativa HOM05D004120 ORTHO05D004951 2.9e-149 532.3 375 76.0
CSS0046330 Camellia sinensis var. sinensis HOM05D004120 ORTHO05D004951 6.5e-149 531.2 370 76.5
Hma1.2p1_0585F.1_g183700 Hydrangea macrophylla HOM05D004120 ORTHO05D004951 5.5e-148 528.1 376 74.2
arahy.Tifrunner.gnm1.ann1.482M5A Arachis hypogaea HOM05D004120 ORTHO05D004951 7.1e-148 527.7 370 73.5
arahy.Tifrunner.gnm1.ann1.G7H05W Arachis hypogaea HOM05D004120 ORTHO05D004951 7.1e-148 527.7 370 73.5
Thecc.03G228600 Theobroma cacao HOM05D004120 ORTHO05D004951 2.1e-147 526.2 374 74.1
Manes.17G013200 Manihot esculenta HOM05D004120 ORTHO05D004951 3.5e-147 525.4 387 73.1
Sopen08g001030 Solanum pennellii HOM05D004120 ORTHO05D004951 3.5e-147 525.4 372 72.6
PGSC0003DMG402001159 Solanum tuberosum HOM05D004120 ORTHO05D004951 3.5e-147 525.4 372 72.6
Nn6g33597 Nelumbo nucifera HOM05D004120 ORTHO05D004951 7.9e-147 524.2 375 75.5
CiPaw.12G063200 Carya illinoinensis HOM05D004120 ORTHO05D004951 1.0e-146 523.9 370 76.8
PGR031G2717 Punica granatum HOM05D004120 ORTHO05D004951 5.1e-146 521.5 377 73.5
Dinv28953 Davidia involucrata HOM05D004120 ORTHO05D004951 6.7e-146 521.2 370 75.9
Ciclev10031866m.g Citrus clementina HOM05D004120 ORTHO05D004951 1.5e-145 520.0 375 74.1
Sed0006792 Sechium edule HOM05D004120 ORTHO05D004951 3.3e-145 518.8 370 75.4
CAN.G1216.15 Capsicum annuum HOM05D004120 ORTHO05D004951 4.3e-145 518.5 373 72.7
TWI81G0459 Tripterygium wilfordii HOM05D004120 ORTHO05D004951 4.3e-145 518.5 376 74.2
Dinv25212 Davidia involucrata HOM05D004120 ORTHO05D004951 5.7e-145 518.1 378 73.3
Ca_24652_v3 Cicer arietinum L. HOM05D004120 ORTHO05D004951 1.6e-144 516.5 370 73.2
Gohir.D08G177300 Gossypium hirsutum HOM05D004120 ORTHO05D004951 2.1e-144 516.2 377 72.9
MELO3C013859.2 Cucumis melo HOM05D004120 ORTHO05D004951 2.8e-144 515.8 374 74.1
CsaV3_3G001840 Cucumis sativus L. HOM05D004120 ORTHO05D004951 3.7e-144 515.4 370 74.3
Lsat_1_v5_gn_6_79560 Lactuca sativa HOM05D004120 ORTHO05D004951 3.7e-144 515.4 380 72.4
Rhsim11G0014500 Rhododendron simsii HOM05D004120 ORTHO05D004951 3.7e-144 515.4 380 73.9
Duzib084G1060 Durio zibethinus HOM05D004120 ORTHO05D004951 4.8e-144 515.0 376 73.1
QL12p005624 Quercus lobata HOM05D004120 ORTHO05D004951 6.2e-144 514.6 362 76.0
VMungo1215G0016 Vigna mungo HOM05D004120 ORTHO05D004951 8.2e-144 514.2 372 72.8
Cpa.g.sc239.7 Carica papaya HOM05D004120 ORTHO05D004951 1.1e-143 513.8 380 73.7
Lj2g0014948 Lotus japonicus HOM05D004120 ORTHO05D004951 1.8e-143 513.1 369 73.7
ClCG10G001730 Citrullus lanatus HOM05D004120 ORTHO05D004951 2.4e-143 512.7 374 74.6
Phvul.002G007300 Phaseolus vulgaris HOM05D004120 ORTHO05D004951 5.3e-143 511.5 372 72.3
COL.COLO4_17048 Corchorus olitorius HOM05D004120 ORTHO05D004951 2.0e-142 509.6 325 79.7
Eucgr.D02191 Eucalyptus grandis HOM05D004120 ORTHO05D004951 2.0e-142 509.6 383 72.3
Glyma.11G043400 Glycine max HOM05D004120 ORTHO05D004951 2.0e-142 509.6 374 73.5
Nn1g00518 Nelumbo nucifera HOM05D004120 ORTHO05D004951 2.0e-142 509.6 377 73.7
Gohir.A08G156900 Gossypium hirsutum HOM05D004120 ORTHO05D004951 3.4e-142 508.8 377 72.1
Gorai.004G185700 Gossypium raimondii HOM05D004120 ORTHO05D004951 5.8e-142 508.1 394 70.3
EL10Ac5g12129 Beta vulgaris HOM05D004120 ORTHO05D004951 1.3e-141 506.9 375 72.0
Potri.001G143400 Populus trichocarpa HOM05D004120 ORTHO05D004951 1.3e-141 506.9 383 71.8
DCAR_008274 Daucus carota HOM05D004120 ORTHO05D004951 3.8e-141 505.4 368 71.5
FAN13G1981 Fragaria x ananassa HOM05D004120 ORTHO05D004951 3.8e-141 505.4 269 98.1
Medtr5g014430 Medicago truncatula HOM05D004120 ORTHO05D004951 1.9e-140 503.1 373 72.9
HanXRQChr03g0084021 Helianthus annuus HOM05D004120 ORTHO05D004951 3.2e-140 502.3 379 70.2
AUR62018721 Chenopodium quinoa HOM05D004120 ORTHO05D004951 9.3e-140 500.7 327 77.7
FAN08G2335 Fragaria x ananassa HOM05D004120 ORTHO05D004951 9.3e-140 500.7 269 97.4
Aqoxy3G02384 Aquilegia oxysepala HOM05D004120 ORTHO05D004951 1.6e-139 500.0 370 72.2
Lalb_Chr05g0213941 Lupinus albus HOM05D004120 ORTHO05D004951 4.6e-139 498.4 369 71.0
Lalb_Chr16g0379111 Lupinus albus HOM05D004120 ORTHO05D004951 7.9e-139 497.7 344 73.3
Cc08_g02620 Coffea canephora HOM05D004120 ORTHO05D004951 1.8e-138 496.5 368 72.6
TPR.G7833 Trifolium pratense HOM05D004120 ORTHO05D004951 1.8e-138 496.5 371 72.0
ECA240G4620 Erigeron canadensis HOM05D004120 ORTHO05D004951 3.3e-137 492.3 372 71.0
Oeu053047.1 Olea europaea HOM05D004120 ORTHO05D004951 4.3e-137 491.9 370 71.4
AL4G31300 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 1.6e-136 490.0 375 70.1
Thhalv10016805m.g Eutrema salsugineum HOM05D004120 ORTHO05D004951 4.8e-136 488.4 376 68.4
Sabra01G0111800 Salix brachista HOM05D004120 ORTHO05D004951 8.2e-136 487.6 407 66.6
Hund14402 Selenicereus undatus HOM05D004120 ORTHO05D004951 8.2e-136 487.6 344 73.8
Oeu028027.1 Olea europaea HOM05D004120 ORTHO05D004951 1.1e-135 487.3 369 69.4
C03p22720 Brassica napus HOM05D004120 ORTHO05D004951 1.8e-135 486.5 379 68.1
ATR0049G040 Amborella trichopoda HOM05D004120 ORTHO05D004951 2.4e-135 486.1 339 73.2
MSTRG.13757 Avicennia marina HOM05D004120 ORTHO05D004951 4.1e-135 485.3 320 76.2
vmacro00332 Vaccinium macrocarpon HOM05D004120 ORTHO05D004951 5.3e-135 485.0 438 63.2
BcaC01g05734 Brassica carinata HOM05D004120 ORTHO05D004951 6.9e-135 484.6 379 67.8
Carub.0004s1696 Capsella rubella HOM05D004120 ORTHO05D004951 6.9e-135 484.6 381 66.9
BolC3t14671H Brassica oleracea HOM05D004120 ORTHO05D004951 9.0e-135 484.2 379 67.8
A03p19500 Brassica napus HOM05D004120 ORTHO05D004951 1.2e-134 483.8 379 68.1
BraA05t19989Z Brassica rapa HOM05D004120 ORTHO05D004951 2.0e-134 483.0 377 68.7
BcaB02g09465 Brassica carinata HOM05D004120 ORTHO05D004951 4.5e-134 481.9 381 68.2
A05p10510 Brassica napus HOM05D004120 ORTHO05D004951 4.5e-134 481.9 377 68.4
Sp4g17480 Schrenkiella parvula HOM05D004120 ORTHO05D004951 5.9e-134 481.5 384 67.2
AT2G35260 Arabidopsis thaliana HOM05D004120 ORTHO05D004951 7.7e-134 481.1 382 67.8
Sc01g0007480 Simmondsia chinensis HOM05D004120 ORTHO05D004951 1.0e-133 480.7 351 72.9
BraA03t11203Z Brassica rapa HOM05D004120 ORTHO05D004951 1.3e-133 480.3 379 67.5
BolC4t22936H Brassica oleracea HOM05D004120 ORTHO05D004951 1.7e-133 479.9 379 67.5
PSO063G1634 Papaver somniferum HOM05D004120 ORTHO05D004951 1.7e-133 479.9 379 68.6
BcaC02g11630 Brassica carinata HOM05D004120 ORTHO05D004951 3.8e-133 478.8 380 67.4
C04p12920 Brassica napus HOM05D004120 ORTHO05D004951 3.8e-133 478.8 380 67.4
PSO782G3668 Papaver somniferum HOM05D004120 ORTHO05D004951 3.8e-133 478.8 376 68.4
CARHR129420 Cardamine hirsuta HOM05D004120 ORTHO05D004951 5.0e-133 478.4 374 67.6
Migut.E00930 Erythranthe guttata HOM05D004120 ORTHO05D004951 6.5e-133 478.0 314 77.7
CDE03G0015 Ceratophyllum demersum HOM05D004120 ORTHO05D004951 8.5e-133 477.6 366 70.2
THA.LOC104807951 Tarenaya hassleriana HOM05D004120 ORTHO05D004951 9.4e-132 474.2 362 68.2
Peaxi162Scf00045g00028 Petunia axillaris HOM05D004120 ORTHO05D004951 3.0e-130 469.2 372 68.5
unitig_52.g17209 Utricularia gibba HOM05D004120 ORTHO05D004951 8.8e-130 467.6 319 76.2
Ah.12g054990 Amaranthus hybridus HOM05D004120 ORTHO05D004951 1.3e-128 463.8 325 74.2
AL716U10010 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 6.3e-128 461.5 375 67.7
unitig_699.g19781 Utricularia gibba HOM05D004120 ORTHO05D004951 8.2e-128 461.1 317 75.4
Psat2g173200 Pisum sativum HOM05D004120 ORTHO05D004951 1.8e-127 459.9 369 68.6
AUR62007285 Chenopodium quinoa HOM05D004120 ORTHO05D004951 3.1e-127 459.1 321 74.1
THA.LOC104798329 Tarenaya hassleriana HOM05D004120 ORTHO05D004951 5.9e-126 454.9 321 71.7
HPP92_022143 Vanilla planifolia HOM05D004120 ORTHO05D004951 2.2e-125 453.0 376 65.4
HPP92_022140 Vanilla planifolia HOM05D004120 ORTHO05D004951 2.9e-125 452.6 297 74.7
ECA246G0968 Erigeron canadensis HOM05D004120 ORTHO05D004951 6.5e-125 451.4 317 73.2
Os03g0100030 Oryza sativa ssp. japonica HOM05D004120 ORTHO05D004951 8.5e-125 451.1 280 77.9
Zm00001eb426630 Zea mays HOM05D004120 ORTHO05D004951 8.5e-125 451.1 280 77.9
Thhalv10025287m.g Eutrema salsugineum HOM05D004120 ORTHO05D004951 3.2e-124 449.1 334 67.4
Aa31LG6G560 Aethionema arabicum HOM05D004120 ORTHO05D004951 4.7e-123 445.3 350 64.9
Carub.0007s2352 Capsella rubella HOM05D004120 ORTHO05D004951 3.0e-122 442.6 334 66.5
Glyma.01G198500 Glycine max HOM05D004120 ORTHO05D004951 3.0e-122 442.6 335 72.5
BcaNung00052 Brassica carinata HOM05D004120 ORTHO05D004951 5.1e-122 441.8 273 78.0
Aa31LG9G15290 Aethionema arabicum HOM05D004120 ORTHO05D004951 6.7e-122 441.4 417 59.2
C07p49190 Brassica napus HOM05D004120 ORTHO05D004951 6.7e-122 441.4 298 72.5
BcaC09g51598 Brassica carinata HOM05D004120 ORTHO05D004951 8.8e-122 441.0 342 66.4
BolC1t01127H Brassica oleracea HOM05D004120 ORTHO05D004951 8.8e-122 441.0 342 66.4
C01p11590 Brassica napus HOM05D004120 ORTHO05D004951 1.1e-121 440.7 342 66.4
BraA01t00933Z Brassica rapa HOM05D004120 ORTHO05D004951 1.1e-121 440.7 342 66.4
A01p09890 Brassica napus HOM05D004120 ORTHO05D004951 2.6e-121 439.5 402 59.7
SGA_v2.0_scaffold54G19447 Striga asiatica HOM05D004120 ORTHO05D004951 3.3e-121 439.1 374 63.1
A03p50800 Brassica napus HOM05D004120 ORTHO05D004951 4.4e-121 438.7 283 74.9
BraA03t14169Z Brassica rapa HOM05D004120 ORTHO05D004951 4.4e-121 438.7 283 74.9
Solyc08g005010.4 Solanum lycopersicum HOM05D004120 ORTHO05D004951 4.4e-121 438.7 326 70.6
CARHR224560 Cardamine hirsuta HOM05D004120 ORTHO05D004951 5.7e-121 438.3 279 75.3
Sp7g16270 Schrenkiella parvula HOM05D004120 ORTHO05D004951 2.2e-120 436.4 333 66.7
AL7G36690 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 3.7e-120 435.6 279 74.2
AT4G17840 Arabidopsis thaliana HOM05D004120 ORTHO05D004951 1.8e-119 433.3 421 57.2
MD06G1033000 Malus domestica HOM05D004120 ORTHO05D004951 1.8e-111 406.8 262 79.8
Atru.chr6.1717 Acer truncatum HOM05D004120 ORTHO05D004951 1.6e-110 403.7 310 70.0
BolC7t45429H Brassica oleracea HOM05D004120 ORTHO05D004951 8.5e-109 397.9 265 74.7
SEGI_24472 Sequoiadendron giganteum HOM05D004120 ORTHO05D004951 5.5e-108 395.2 330 61.8
Haze_08240 Corylus avellana HOM05D004120 ORTHO05D004951 7.5e-105 384.8 332 67.2
Nitab4.5_0000804g0170 Nicotiana tabacum HOM05D004120 ORTHO05D004951 1.5e-100 370.5 211 85.8
Duzib205G1837 Durio zibethinus HOM05D004120 ORTHO05D004951 5.5e-100 368.6 297 68.7
Actinidia28172 Actinidia chinensis HOM05D004120 ORTHO05D004951 3.4e-89 332.8 190 88.4
Mapoly0008s0099 Marchantia polymorpha HOM05D004120 ORTHO05D004951 5.4e-87 325.5 354 48.9
Pp3c10_10980 Physcomitrium patens HOM05D004120 ORTHO05D004951 2.9e-85 319.7 270 58.1
Pp3c14_25270 Physcomitrium patens HOM05D004120 ORTHO05D004951 7.3e-84 315.1 273 57.5
unitig_744.g24311 Utricularia gibba HOM05D004120 ORTHO05D004951 2.1e-83 313.5 261 64.4
Actinidia25961 Actinidia chinensis HOM05D004120 ORTHO05D004951 6.6e-77 292.0 257 66.1
Nitab4.5_0002539g0020 Nicotiana tabacum HOM05D004120 ORTHO05D004951 1.5e-76 290.8 250 66.0
SMO356G0344 Selaginella moellendorffii HOM05D004120 ORTHO05D004951 4.6e-70 269.2 255 51.4
CDE06G0385 Ceratophyllum demersum HOM05D004120 ORTHO05D004951 2.2e-64 250.4 243 60.9
arahy.Tifrunner.gnm1.ann1.7CR4HZ Arachis hypogaea HOM05D004120 ORTHO05D004951 4.6e-62 242.7 174 70.1
arahy.Tifrunner.gnm1.ann1.K2V32T Arachis hypogaea HOM05D004120 ORTHO05D004951 7.8e-62 241.9 174 69.5
arahy.Tifrunner.gnm1.ann1.WRTU1C Arachis hypogaea HOM05D004120 ORTHO05D004951 5.6e-60 235.7 174 68.4
arahy.Tifrunner.gnm1.ann1.3C7WBJ Arachis hypogaea HOM05D004120 ORTHO05D004951 2.8e-59 233.4 130 86.9
HanXRQChr05g0153901 Helianthus annuus HOM05D004120 ORTHO05D004951 8.9e-58 228.4 162 75.9
arahy.Tifrunner.gnm1.ann1.B3D4NA Arachis hypogaea HOM05D004120 ORTHO05D004951 3.1e-42 176.8 110 77.3
arahy.Tifrunner.gnm1.ann1.AE9Z3E Arachis hypogaea HOM05D004120 ORTHO05D004951 1.5e-41 174.5 111 75.7
arahy.Tifrunner.gnm1.ann1.4R7L3N Arachis hypogaea HOM05D004120 ORTHO05D004951 2.0e-41 174.1 98 83.7
AagrBONN_evm.TU.Sc2ySwM_117.2801 Anthoceros agrestis HOM05D010715 ORTHO05D004951 2.7e-38 163.7 157 53.5
arahy.Tifrunner.gnm1.ann1.RCE8PR Arachis hypogaea HOM05D004120 ORTHO05D004951 1.8e-34 151.0 131 61.8
arahy.Tifrunner.gnm1.ann1.E125G1 Arachis hypogaea HOM05D004120 ORTHO05D004951 3.2e-31 140.2 72 88.9
arahy.Tifrunner.gnm1.ann1.BQ9W36 Arachis hypogaea HOM05D004120 ORTHO05D004951 2.1e-30 137.5 72 86.1
arahy.Tifrunner.gnm1.ann1.U1DJ88 Arachis hypogaea HOM05D004120 ORTHO05D007788 2.1e-30 137.5 75 86.7
RcHm_v2.0_Chr6g0284251 Rosa chinensis HOM05D004120 ORTHO05D004951 3.3e-28 130.2 72 87.5
Aa31sc618G30 Aethionema arabicum HOM05D004120 ORTHO05D004951 5.7e-28 129.4 169 47.3
arahy.Tifrunner.gnm1.ann1.L0EJKI Arachis hypogaea HOM05D004120 ORTHO05D004951 6.9e-26 122.5 62 87.1
CBR_g56906 Chara braunii HOM05D004120 ORTHO05D004951 1.5e-25 121.3 114 47.4
AagrBONN_evm.TU.Sc2ySwM_117.3803 Anthoceros agrestis HOM05D004120 ORTHO05D004951 1.7e-24 117.9 102 55.9
arahy.Tifrunner.gnm1.ann1.H82JQN Arachis hypogaea HOM05D004120 ORTHO05D021518 8.4e-24 115.5 88 64.8
CBR_g19263 Chara braunii HOM05D004120 ORTHO05D004951 3.3e-20 103.6 141 41.8
EL10Ac1g01819 Beta vulgaris HOM05D004120 ORTHO05D023811 1.3e-19 101.7 69 78.3
arahy.Tifrunner.gnm1.ann1.JI8VIY Arachis hypogaea HOM05D004120 ORTHO05D021518 2.8e-19 100.5 104 53.8
arahy.Tifrunner.gnm1.ann1.NR0HVE Arachis hypogaea HOM05D004120 ORTHO05D021518 1.5e-17 94.7 57 84.2
AUR62039713 Chenopodium quinoa HOM05D004317 ORTHO05D005031 5.0e-16 89.7 55 81.8
CAN.G399.4 Capsicum annuum HOM05D004120 ORTHO05D004951 3.0e-13 80.5 55 72.7
CAN.G36.13 Capsicum annuum HOM05D004120 ORTHO05D004951 5.1e-13 79.7 59 62.7
Aa31sc185G30 Aethionema arabicum HOM05D004120 ORTHO05D004951 9.4e-07 58.9 107 36.4
A01p32880 Brassica napus HOM05D004120 ORTHO05D023811 2.1e-06 57.8 28 92.9
A06p35780 Brassica napus HOM05D004120 ORTHO05D023811 2.1e-06 57.8 28 92.9
BraA01t03409Z Brassica rapa HOM05D004120 ORTHO05D023811 2.1e-06 57.8 28 92.9


User provided reference genes

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