Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G3396 Fragaria x ananassa HOM05D005975 ORTHO05D007373 0.0e+00 1343.9 672 100.0
FvH4_5g12680 Fragaria vesca HOM05D005975 ORTHO05D007373 0.0e+00 1341.6 672 99.9
FAN04G2679 Fragaria x ananassa HOM05D005975 ORTHO05D007373 0.0e+00 1312.7 688 96.1
FAN08G0232 Fragaria x ananassa HOM05D005975 ORTHO05D007373 0.0e+00 1303.9 674 97.6
FAN13G1844 Fragaria x ananassa HOM05D005975 ORTHO05D007373 0.0e+00 1298.1 683 95.9
RcHm_v2.0_Chr7g0184651 Rosa chinensis HOM05D005975 ORTHO05D007373 0.0e+00 1263.8 677 94.2
MD14G1222100 Malus domestica HOM05D005975 ORTHO05D007373 0.0e+00 1155.2 679 86.0
MD06G1211600 Malus domestica HOM05D005975 ORTHO05D007373 0.0e+00 1143.6 679 85.0
Thecc.03G028700 Theobroma cacao HOM05D005975 ORTHO05D007373 0.0e+00 1075.1 682 81.1
CiPaw.15G127100 Carya illinoinensis HOM05D005975 ORTHO05D007373 1.6e-310 1068.9 693 78.2
Gohir.A11G007000 Gossypium hirsutum HOM05D005975 ORTHO05D007373 8.0e-307 1056.6 677 78.6
Duzib205G1016 Durio zibethinus HOM05D005975 ORTHO05D007373 2.3e-306 1055.0 677 80.1
Gorai.007G007400 Gossypium raimondii HOM05D005975 ORTHO05D007373 3.0e-306 1054.7 677 78.4
Gohir.D11G006100 Gossypium hirsutum HOM05D005975 ORTHO05D007373 7.5e-305 1050.0 677 78.0
Ciclev10019197m.g Citrus clementina HOM05D005975 ORTHO05D007373 3.2e-303 1044.6 659 79.7
Manes.05G139300 Manihot esculenta HOM05D005975 ORTHO05D007373 5.4e-303 1043.9 675 77.9
PGR083G1175 Punica granatum HOM05D005975 ORTHO05D007373 4.6e-302 1040.8 659 80.1
CSS0000913 Camellia sinensis var. sinensis HOM05D005975 ORTHO05D007373 1.6e-299 1032.3 690 76.7
Eucgr.B00701 Eucalyptus grandis HOM05D005975 ORTHO05D007373 1.8e-298 1028.9 656 78.4
ClCG06G015000 Citrullus lanatus HOM05D005975 ORTHO05D007373 3.4e-297 1024.6 676 77.8
Hma1.2p1_0592F.1_g185285 Hydrangea macrophylla HOM05D005975 ORTHO05D007373 4.4e-297 1024.2 673 77.1
Potri.015G049900 Populus trichocarpa HOM05D005975 ORTHO05D007373 4.4e-297 1024.2 673 77.1
GSVIVG01008239001 Vitis vinifera HOM05D005975 ORTHO05D007373 6.4e-296 1020.4 677 77.0
TAR622G0473 Trochodendron aralioides HOM05D005975 ORTHO05D007373 3.2e-295 1018.1 679 75.6
TAR374G1293 Trochodendron aralioides HOM05D005975 ORTHO05D007373 4.1e-295 1017.7 673 75.8
Haze_18619 Corylus avellana HOM05D005975 ORTHO05D007373 9.2e-295 1016.5 602 84.2
PSO063G1047 Papaver somniferum HOM05D005975 ORTHO05D007373 9.2e-295 1016.5 658 77.1
QL10p022556 Quercus lobata HOM05D005975 ORTHO05D007373 2.7e-294 1015.0 604 83.9
MELO3C017289.2 Cucumis melo HOM05D005975 ORTHO05D007373 4.6e-294 1014.2 674 77.0
CsaV3_1G003650 Cucumis sativus L. HOM05D005975 ORTHO05D007373 1.1e-292 1009.6 674 77.0
Atru.chr9.776 Acer truncatum HOM05D005975 ORTHO05D007373 3.3e-292 1008.1 617 81.7
PSO782G2585 Papaver somniferum HOM05D005975 ORTHO05D007373 9.5e-292 1006.5 657 76.6
Ca_23135_v3 Cicer arietinum L. HOM05D005975 ORTHO05D007373 1.6e-291 1005.7 677 75.8
Potri.012G060200 Populus trichocarpa HOM05D005975 ORTHO05D007373 6.2e-291 1003.8 675 75.3
Sed0024013 Sechium edule HOM05D005975 ORTHO05D007373 1.4e-290 1002.7 672 76.6
Rhsim08G0136800 Rhododendron simsii HOM05D005975 ORTHO05D007373 9.8e-289 996.5 675 74.5
Sabra12G0043300 Salix brachista HOM05D005975 ORTHO05D007373 2.2e-288 995.3 672 74.7
Dinv38586 Davidia involucrata HOM05D005975 ORTHO05D007373 3.7e-288 994.6 605 82.6
Glyma.04G152200 Glycine max HOM05D005975 ORTHO05D007373 6.4e-288 993.8 678 74.0
Glyma.17G121100 Glycine max HOM05D005975 ORTHO05D007373 6.4e-288 993.8 671 74.2
Phvul.009G200500 Phaseolus vulgaris HOM05D005975 ORTHO05D007373 6.4e-288 993.8 676 74.3
Glyma.06G210800 Glycine max HOM05D005975 ORTHO05D007373 4.1e-287 991.1 673 74.3
Actinidia31028 Actinidia chinensis HOM05D005975 ORTHO05D007373 9.2e-287 989.9 651 76.7
Cc04_g07500 Coffea canephora HOM05D005975 ORTHO05D007373 6.0e-286 987.3 674 74.2
Lalb_Chr12g0197601 Lupinus albus HOM05D005975 ORTHO05D007373 6.0e-286 987.3 659 75.6
Lj1g0009400 Lotus japonicus HOM05D005975 ORTHO05D007373 1.3e-285 986.1 679 74.5
Aqoxy3G03906 Aquilegia oxysepala HOM05D005975 ORTHO05D007373 6.6e-285 983.8 678 72.9
Peaxi162Scf00015g00726 Petunia axillaris HOM05D005975 ORTHO05D007373 1.9e-284 982.2 652 74.8
AT1G73930 Arabidopsis thaliana HOM05D005975 ORTHO05D007373 4.3e-284 981.1 653 74.7
AL2G33760 Arabidopsis lyrata HOM05D005975 ORTHO05D007373 7.3e-284 980.3 652 74.1
AUR62032193 Chenopodium quinoa HOM05D005975 ORTHO05D007373 9.5e-284 979.9 656 75.3
Psat1g024880 Pisum sativum HOM05D005975 ORTHO05D007373 1.6e-283 979.2 676 73.7
Nitab4.5_0001599g0180 Nicotiana tabacum HOM05D005975 ORTHO05D007373 2.1e-283 978.8 668 73.5
AUR62036958 Chenopodium quinoa HOM05D005975 ORTHO05D007373 6.2e-283 977.2 657 75.0
Thhalv10018286m.g Eutrema salsugineum HOM05D005975 ORTHO05D007373 6.2e-283 977.2 652 74.8
DCAR_015134 Daucus carota HOM05D005975 ORTHO05D007373 2.0e-281 972.2 653 74.3
PGSC0003DMG400005625 Solanum tuberosum HOM05D005975 ORTHO05D007373 7.6e-281 970.3 663 73.8
HanXRQChr09g0269781 Helianthus annuus HOM05D005975 ORTHO05D007373 2.2e-280 968.8 648 74.2
CARHR067040 Cardamine hirsuta HOM05D005975 ORTHO05D007373 2.9e-280 968.4 654 74.2
Hund02524 Selenicereus undatus HOM05D005975 ORTHO05D007373 2.9e-280 968.4 654 74.5
Solyc03g119750.4 Solanum lycopersicum HOM05D005975 ORTHO05D007373 3.7e-280 968.0 666 73.1
Sopen03g038600 Solanum pennellii HOM05D005975 ORTHO05D007373 8.4e-280 966.8 665 72.9
TPR.G10356 Trifolium pratense HOM05D005975 ORTHO05D007373 1.6e-278 962.6 675 72.7
Cpa.g.sc549.1 Carica papaya HOM05D005975 ORTHO05D007373 2.7e-278 961.8 601 79.4
ECA232G0421 Erigeron canadensis HOM05D005975 ORTHO05D007373 3.5e-278 961.4 648 73.8
Prupe.5G217600 Prunus persica HOM05D005975 ORTHO05D007373 4.6e-278 961.1 544 88.6
Nitab4.5_0000410g0070 Nicotiana tabacum HOM05D005975 ORTHO05D007373 3.0e-277 958.4 662 73.1
Oeu024324.1 Olea europaea HOM05D005975 ORTHO05D007373 1.1e-276 956.4 673 72.5
Ah.11g047090 Amaranthus hybridus HOM05D005975 ORTHO05D007373 4.7e-275 951.0 648 74.1
SGA_v2.0_scaffold25G10981 Striga asiatica HOM05D005975 ORTHO05D007373 2.4e-274 948.7 650 72.6
VMungo1215G0359 Vigna mungo HOM05D005975 ORTHO05D007373 1.5e-273 946.0 654 71.9
Hund10002 Selenicereus undatus HOM05D005975 ORTHO05D007373 5.8e-273 944.1 655 72.4
Sc10g0009550 Simmondsia chinensis HOM05D005975 ORTHO05D007373 1.3e-272 943.0 662 72.4
vmacro17674 Vaccinium macrocarpon HOM05D005975 ORTHO05D007373 8.4e-272 940.3 600 77.0
VMungo1309G0041 Vigna mungo HOM05D005975 ORTHO05D007373 1.1e-271 939.9 600 76.8
MBI19_g38388_MAGBIO Magnolia biondii HOM05D005975 ORTHO05D007373 7.1e-271 937.2 668 70.8
A02p18950 Brassica napus HOM05D005975 ORTHO05D007373 9.3e-271 936.8 656 71.6
THA.LOC104808292 Tarenaya hassleriana HOM05D005975 ORTHO05D007373 9.3e-271 936.8 653 70.9
arahy.Tifrunner.gnm1.ann1.1K5T8S Arachis hypogaea HOM05D005975 ORTHO05D007373 4.6e-270 934.5 603 76.3
BolC2t09180H Brassica oleracea HOM05D005975 ORTHO05D007373 1.3e-269 932.9 656 71.6
BraA02t06937Z Brassica rapa HOM05D005975 ORTHO05D007373 1.7e-269 932.6 656 72.0
Lsat_1_v5_gn_3_10441 Lactuca sativa HOM05D005975 ORTHO05D007373 2.5e-268 928.7 648 72.1
BcaB05g24819 Brassica carinata HOM05D005975 ORTHO05D007373 7.3e-268 927.2 655 71.0
EL10Ac5g11254 Beta vulgaris HOM05D005975 ORTHO05D007373 6.2e-267 924.1 604 75.8
C02p31490 Brassica napus HOM05D005975 ORTHO05D007373 6.2e-267 924.1 656 71.2
BcaC03g15468 Brassica carinata HOM05D005975 ORTHO05D007373 1.1e-266 923.3 656 71.3
CAN.G438.116 Capsicum annuum HOM05D005975 ORTHO05D007373 2.6e-265 918.7 604 74.8
Migut.I00389 Erythranthe guttata HOM05D005975 ORTHO05D007373 2.6e-265 918.7 673 70.0
Sp5g29130 Schrenkiella parvula HOM05D005975 ORTHO05D007373 9.9e-265 916.8 652 70.7
Lj9A429T54 Lonicera japonica HOM05D005975 ORTHO05D007373 1.4e-263 912.9 605 75.5
MSTRG.22940 Avicennia marina HOM05D005975 ORTHO05D007373 1.2e-262 909.8 609 73.6
Aa31LG4G4220 Aethionema arabicum HOM05D005975 ORTHO05D007373 6.6e-261 904.0 652 69.9
ATR0753G136 Amborella trichopoda HOM05D005975 ORTHO05D007373 2.1e-251 872.5 741 61.0
SalBow5G4970 Salvia bowleyana HOM05D005975 ORTHO05D007373 5.1e-237 824.7 658 66.1
Sabra15G0077800 Salix brachista HOM05D005975 ORTHO05D007373 2.4e-234 815.8 652 66.3
unitig_22.g6248 Utricularia gibba HOM05D005975 ORTHO05D007373 3.1e-234 815.5 639 64.9
Phvul.003G176900 Phaseolus vulgaris HOM05D005975 ORTHO05D007373 1.2e-230 803.5 520 75.8
Os03g0259700 Oryza sativa ssp. japonica HOM05D005975 ORTHO05D007373 6.1e-230 801.2 671 61.4
Glyma.05G013100 Glycine max HOM05D005975 ORTHO05D007373 3.1e-226 788.9 667 62.8
SEGI_09157 Sequoiadendron giganteum HOM05D005975 ORTHO05D007373 3.6e-222 775.4 775 54.3
COL.COLO4_22722 Corchorus olitorius HOM05D005975 ORTHO05D007373 5.5e-215 751.5 470 81.3
Pp3c4_11450 Physcomitrium patens HOM05D005975 ORTHO05D007373 3.6e-214 748.8 765 51.1
Pp3c12_18170 Physcomitrium patens HOM05D005975 ORTHO05D007373 1.4e-213 746.9 773 50.7
AagrBONN_evm.TU.Sc2ySwM_228.4839 Anthoceros agrestis HOM05D005975 ORTHO05D007373 1.2e-212 743.8 838 49.4
Zm00001eb011310 Zea mays HOM05D005975 ORTHO05D007373 9.1e-210 734.2 615 60.8
Mapoly0016s0160 Marchantia polymorpha HOM05D005975 ORTHO05D007373 4.2e-207 725.3 861 46.5
Carub.0002s2070 Capsella rubella HOM05D005975 ORTHO05D007373 5.2e-205 718.4 460 77.6
SMO367G0788 Selaginella moellendorffii HOM05D005975 ORTHO05D007373 1.0e-189 667.5 630 53.7
Nn3g17719 Nelumbo nucifera HOM05D005975 ORTHO05D007373 1.7e-187 660.2 423 78.0
CDE05G1454 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 5.4e-170 602.1 538 59.7
CBR_g30105 Chara braunii HOM05D005975 ORTHO05D007373 1.9e-162 577.0 547 54.3
TAR622G1340 Trochodendron aralioides HOM05D005975 ORTHO05D007373 1.3e-155 554.3 440 66.6
PSO074G0001 Papaver somniferum HOM05D005975 ORTHO05D007373 2.9e-131 473.4 307 75.2
CDE05G3359 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 4.2e-122 443.0 393 60.3
arahy.Tifrunner.gnm1.ann1.CEL6SJ Arachis hypogaea HOM05D005975 ORTHO05D007373 1.4e-114 417.9 262 77.9
HPP92_016579 Vanilla planifolia HOM05D005975 ORTHO05D007373 6.5e-107 392.5 339 59.0
BcaB05g24817 Brassica carinata HOM05D005975 ORTHO05D007373 3.6e-97 360.1 215 80.5
HPP92_016580 Vanilla planifolia HOM05D005975 ORTHO05D007373 4.7e-97 359.8 255 68.6
Zm00001eb237870 Zea mays HOM05D005975 ORTHO05D007373 6.1e-89 332.8 542 39.9
SMO146G0145 Selaginella moellendorffii HOM05D005975 ORTHO05D007373 4.2e-82 310.1 336 49.7
Zm00001eb078910 Zea mays HOM05D005975 ORTHO05D007373 1.4e-64 251.9 155 75.5
Nn3g18207 Nelumbo nucifera HOM05D005975 ORTHO05D007373 1.0e-43 182.6 140 67.1
CDE05G0573 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 6.9e-40 169.9 133 63.9
Cre14.g633500 Chlamydomonas reinhardtii HOM05D005975 ORTHO05D007373 9.9e-39 166.0 449 30.5
Dinv38585 Davidia involucrata HOM05D005975 ORTHO05D007373 4.9e-14 84.0 73 64.4
Cfa019814 Carpinus fangiana HOM05D005975 ORTHO05D007373 4.2e-13 80.9 67 65.7
Nn1g03516 Nelumbo nucifera HOM05D005975 ORTHO05D007373 1.1e-10 72.8 49 73.5
Nn4g23789 Nelumbo nucifera HOM05D005975 ORTHO05D007373 1.3e-09 69.3 88 44.3
Potri.001G289250 Populus trichocarpa HOM05D005975 ORTHO05D007373 1.2e-07 62.8 48 62.5
CAN.G438.117 Capsicum annuum HOM05D005975 ORTHO05D007373 5.9e-07 60.5 39 74.4
Lj9A429T53 Lonicera japonica HOM05D005975 ORTHO05D007373 2.9e-06 58.2 40 70.0


User provided reference genes

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