Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G3380 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1942.2 1013 100.0
FvH4_5g07490 Fragaria vesca HOM05D005223 ORTHO05D006449 0.0e+00 1928.3 1013 99.4
FAN04G2946 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1902.5 1013 97.9
FAN13G2650 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1888.6 1018 97.1
RcHm_v2.0_Chr7g0191161 Rosa chinensis HOM05D005223 ORTHO05D006449 0.0e+00 1767.7 1017 91.2
Prupe.5G157000 Prunus persica HOM05D005223 ORTHO05D006449 0.0e+00 1542.3 1022 78.8
MD14G1163600 Malus domestica HOM05D005223 ORTHO05D006449 0.0e+00 1535.8 1019 78.2
Cfa018892 Carpinus fangiana HOM05D005223 ORTHO05D006449 0.0e+00 1384.0 1022 70.7
Haze_07276 Corylus avellana HOM05D005223 ORTHO05D006449 0.0e+00 1381.7 1021 70.5
QL10p005060 Quercus lobata HOM05D005223 ORTHO05D006449 0.0e+00 1379.0 1026 70.5
Dinv38469 Davidia involucrata HOM05D005223 ORTHO05D006449 0.0e+00 1346.3 1002 70.5
GSVIVG01007540001 Vitis vinifera HOM05D005223 ORTHO05D006449 0.0e+00 1343.2 1059 66.6
CANSAT80G2773 Cannabis sativa HOM05D005223 ORTHO05D006449 0.0e+00 1342.8 1024 67.6
Atru.chr9.1012 Acer truncatum HOM05D005223 ORTHO05D006449 0.0e+00 1340.5 1015 67.6
Thecc.03G122800 Theobroma cacao HOM05D005223 ORTHO05D006449 0.0e+00 1328.2 1017 68.9
TWI14G1297 Tripterygium wilfordii HOM05D005223 ORTHO05D006449 0.0e+00 1307.7 1015 67.0
Manes.06G115300 Manihot esculenta HOM05D005223 ORTHO05D006449 0.0e+00 1299.3 1023 66.5
Ciclev10018616m.g Citrus clementina HOM05D005223 ORTHO05D006449 0.0e+00 1291.2 1023 66.1
Gohir.A07G053500 Gossypium hirsutum HOM05D005223 ORTHO05D006449 0.0e+00 1286.2 1019 66.1
Gorai.001G061400 Gossypium raimondii HOM05D005223 ORTHO05D006449 0.0e+00 1283.1 1020 65.6
Gohir.D07G057900 Gossypium hirsutum HOM05D005223 ORTHO05D006449 0.0e+00 1280.0 1020 65.5
Potri.015G090700 Populus trichocarpa HOM05D005223 ORTHO05D006449 0.0e+00 1280.0 1025 66.2
CSS0037650 Camellia sinensis var. sinensis HOM05D005223 ORTHO05D006449 0.0e+00 1274.2 1020 66.0
TAR629G2346 Trochodendron aralioides HOM05D005223 ORTHO05D006449 0.0e+00 1266.1 1012 65.9
ClCG03G003490 Citrullus lanatus HOM05D005223 ORTHO05D006449 0.0e+00 1261.5 1019 64.0
Hma1.2p1_0123F.1_g058130 Hydrangea macrophylla HOM05D005223 ORTHO05D006449 0.0e+00 1260.0 1022 64.1
Sed0011232 Sechium edule HOM05D005223 ORTHO05D006449 0.0e+00 1255.7 1028 64.6
CsaV3_1G009290 Cucumis sativus L. HOM05D005223 ORTHO05D006449 0.0e+00 1252.7 1026 63.5
MELO3C002332.2 Cucumis melo HOM05D005223 ORTHO05D006449 0.0e+00 1250.3 1023 63.0
Phvul.009G168800 Phaseolus vulgaris HOM05D005223 ORTHO05D006449 0.0e+00 1244.6 1021 64.4
Lj1g0000662 Lotus japonicus HOM05D005223 ORTHO05D006449 0.0e+00 1237.2 1016 64.1
Ca_16089_v3 Cicer arietinum L. HOM05D005223 ORTHO05D006449 0.0e+00 1234.6 1013 62.9
Nn4g22461 Nelumbo nucifera HOM05D005223 ORTHO05D006449 0.0e+00 1228.4 1033 63.4
Glyma.04G193000 Glycine max HOM05D005223 ORTHO05D006449 0.0e+00 1223.8 1018 63.2
Sabra15G0112800 Salix brachista HOM05D005223 ORTHO05D000001 0.0e+00 1221.8 997 65.5
Medtr3g075100 Medicago truncatula HOM05D005223 ORTHO05D006449 0.0e+00 1219.5 1011 61.5
vmacro19239 Vaccinium macrocarpon HOM05D005223 ORTHO05D006449 0.0e+00 1216.8 1072 60.8
VMungo1309G0017 Vigna mungo HOM05D005223 ORTHO05D006449 0.0e+00 1215.3 1022 62.9
Duzib084G0239 Durio zibethinus HOM05D005223 ORTHO05D006449 0.0e+00 1214.5 1024 64.0
CiPaw.12G035700 Carya illinoinensis HOM05D005223 ORTHO05D006449 0.0e+00 1213.7 902 71.3
Lj9C475T6 Lonicera japonica HOM05D005223 ORTHO05D006449 0.0e+00 1211.4 1033 62.3
Rhsim08G0185000 Rhododendron simsii HOM05D005223 ORTHO05D006449 0.0e+00 1209.1 1024 62.5
PGR083G1937 Punica granatum HOM05D005223 ORTHO05D006449 0.0e+00 1203.0 1039 62.5
TPR.G13978 Trifolium pratense HOM05D005223 ORTHO05D006449 0.0e+00 1200.3 1015 61.8
Lalb_Chr08g0236961 Lupinus albus HOM05D005223 ORTHO05D006449 0.0e+00 1199.5 1012 61.9
Eucgr.L01337 Eucalyptus grandis HOM05D005223 ORTHO05D006449 0.0e+00 1199.1 1017 61.0
MSTRG.11293 Avicennia marina HOM05D005223 ORTHO05D006449 0.0e+00 1189.1 1016 61.2
Aqoxy5G03583 Aquilegia oxysepala HOM05D005223 ORTHO05D006449 0.0e+00 1173.7 1017 61.1
arahy.Tifrunner.gnm1.ann1.D4E4RT Arachis hypogaea HOM05D005223 ORTHO05D006449 0.0e+00 1165.2 1045 60.5
SGA_v2.0_scaffold457G51932 Striga asiatica HOM05D005223 ORTHO05D006449 0.0e+00 1160.6 1024 59.3
Cc04_g10370 Coffea canephora HOM05D005223 ORTHO05D006449 0.0e+00 1159.1 1008 60.2
DCAR_021603 Daucus carota HOM05D005223 ORTHO05D006449 0.0e+00 1158.3 1023 59.7
ECA246G2102 Erigeron canadensis HOM05D005223 ORTHO05D006449 0.0e+00 1154.8 1017 60.4
HanXRQChr05g0154741 Helianthus annuus HOM05D005223 ORTHO05D006449 0.0e+00 1154.8 1010 59.5
Nitab4.5_0000955g0070 Nicotiana tabacum HOM05D005223 ORTHO05D006449 0.0e+00 1153.3 1020 60.4
Nitab4.5_0002775g0020 Nicotiana tabacum HOM05D005223 ORTHO05D006449 0.0e+00 1151.7 1020 60.3
PGSC0003DMG400025026 Solanum tuberosum HOM05D005223 ORTHO05D006449 0.0e+00 1150.6 1009 59.9
Migut.I00475 Erythranthe guttata HOM05D005223 ORTHO05D006449 0.0e+00 1149.4 1016 59.9
Solyc10g006780.4 Solanum lycopersicum HOM05D005223 ORTHO05D006449 0.0e+00 1146.3 1002 59.3
THA.LOC104818196 Tarenaya hassleriana HOM05D005223 ORTHO05D006449 0.0e+00 1145.6 1020 58.1
Sopen10g002700 Solanum pennellii HOM05D005223 ORTHO05D006449 0.0e+00 1142.5 1003 59.9
SalBow5G2547 Salvia bowleyana HOM05D005223 ORTHO05D006449 0.0e+00 1132.5 1031 57.9
PSO063G1058 Papaver somniferum HOM05D005223 ORTHO05D006449 0.0e+00 1129.8 1022 58.1
AL5G27880 Arabidopsis lyrata HOM05D005223 ORTHO05D006449 0.0e+00 1126.3 1027 58.2
Carub.0005s1465 Capsella rubella HOM05D005223 ORTHO05D006449 0.0e+00 1123.2 1023 57.8
AT3G48470 Arabidopsis thaliana HOM05D005223 ORTHO05D006449 0.0e+00 1122.8 1025 57.9
CAN.G1110.40 Capsicum annuum HOM05D005223 ORTHO05D006449 0.0e+00 1104.4 1023 57.6
Peaxi162Scf00536g00422 Petunia axillaris HOM05D005223 ORTHO05D006449 0.0e+00 1099.7 1011 58.3
Lsat_1_v5_gn_5_13240 Lactuca sativa HOM05D005223 ORTHO05D006449 0.0e+00 1097.4 989 58.2
CARHR157230 Cardamine hirsuta HOM05D005223 ORTHO05D006449 0.0e+00 1096.3 1025 56.9
BcaC01g02344 Brassica carinata HOM05D005223 ORTHO05D006449 0.0e+00 1082.4 1015 57.4
Sp5g13560 Schrenkiella parvula HOM05D005223 ORTHO05D006449 0.0e+00 1081.6 1028 56.0
C03p66340 Brassica napus HOM05D005223 ORTHO05D006449 0.0e+00 1080.5 1015 57.2
BcaB02g10650 Brassica carinata HOM05D005223 ORTHO05D006449 0.0e+00 1078.9 1019 56.5
BraA06t25704Z Brassica rapa HOM05D005223 ORTHO05D006449 0.0e+00 1078.2 1026 57.5
A06p27680 Brassica napus HOM05D005223 ORTHO05D006449 6.9e-312 1074.3 1024 57.3
Sc10g0010350 Simmondsia chinensis HOM05D005223 ORTHO05D006449 6.2e-311 1070.8 950 59.8
BolC3t18905H Brassica oleracea HOM05D005223 ORTHO05D006449 2.9e-308 1062.0 1035 56.3
Psat5g141880 Pisum sativum HOM05D005223 ORTHO05D006449 2.9e-308 1062.0 897 61.6
COL.COLO4_09267 Corchorus olitorius HOM05D005223 ORTHO05D006449 3.0e-305 1052.0 852 66.4
EL10Ac7g18074 Beta vulgaris HOM05D005223 ORTHO05D006449 2.9e-300 1035.4 1019 56.2
CDE02G2587 Ceratophyllum demersum HOM05D005223 ORTHO05D006449 6.4e-300 1034.2 1032 53.4
AUR62001278 Chenopodium quinoa HOM05D005223 ORTHO05D006449 5.4e-299 1031.2 1032 55.3
AUR62025728 Chenopodium quinoa HOM05D005223 ORTHO05D006449 1.3e-297 1026.5 1033 55.1
ATR0824G104 Amborella trichopoda HOM05D005223 ORTHO05D006449 3.0e-297 1025.4 1015 55.0
Thhalv10010098m.g Eutrema salsugineum HOM05D005223 ORTHO05D006449 8.1e-287 990.7 1019 53.4
SGA_v2.0_scaffold50G18602 Striga asiatica HOM05D005223 ORTHO05D006449 8.4e-284 980.7 1024 53.6
Hund18539 Selenicereus undatus HOM05D005223 ORTHO05D006449 1.9e-283 979.5 977 54.8
Os02g0598800 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 7.4e-280 967.6 1020 51.5
Zm00001eb246300 Zea mays HOM05D005223 ORTHO05D006449 4.1e-278 961.8 1024 50.8
arahy.Tifrunner.gnm1.ann1.9N92ER Arachis hypogaea HOM05D005223 ORTHO05D006449 7.9e-266 921.0 771 63.6
Glyma.06G172900 Glycine max HOM05D005223 ORTHO05D006449 3.0e-265 919.1 739 63.3
Eucgr.B00148 Eucalyptus grandis HOM05D005223 ORTHO05D006449 4.3e-264 915.2 1024 51.3
Os02g0599100 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 3.3e-203 713.0 660 56.7
Os02g0598400 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 1.6e-202 710.7 660 56.8
CSS0005553 Camellia sinensis var. sinensis HOM05D005223 ORTHO05D006449 4.4e-200 702.6 640 61.1
Actinidia19387 Actinidia chinensis HOM05D005223 ORTHO05D006449 1.1e-190 671.4 594 58.8
Cpa.g.sc52.35 Carica papaya HOM05D005223 ORTHO05D006449 6.4e-183 645.6 568 64.3
Aa31LG4G17060 Aethionema arabicum HOM05D005223 ORTHO05D006449 1.7e-180 637.5 616 56.5
FvH4_5g07461 Fragaria vesca HOM05D005223 ORTHO05D006449 1.4e-161 574.7 326 94.8
Pp3c24_17160 Physcomitrium patens HOM05D005223 ORTHO05D006449 7.6e-160 568.9 1052 36.1
Mapoly0075s0016 Marchantia polymorpha HOM05D005223 ORTHO05D006449 6.7e-156 555.8 1071 35.6
SHI10647 Sapria himalayana HOM05D005223 ORTHO05D006449 6.5e-151 539.3 533 58.0
SMO367G0489 Selaginella moellendorffii HOM05D005223 ORTHO05D006449 2.2e-135 487.6 903 36.8
Oeu007006.1 Olea europaea HOM05D005223 ORTHO05D006449 8.8e-132 475.7 348 69.8
FvH4_5g07361 Fragaria vesca HOM05D005223 ORTHO05D006449 5.9e-120 436.4 618 48.7
Oeu057221.1 Olea europaea HOM05D005223 ORTHO05D006449 9.5e-110 402.5 394 53.0
FvH4_3g25520 Fragaria vesca HOM05D005223 ORTHO05D006449 3.0e-108 397.5 254 83.5
Aa31LG4G17050 Aethionema arabicum HOM05D005223 ORTHO05D006449 1.7e-98 365.2 443 46.0
CBR_g45764 Chara braunii HOM05D005223 ORTHO05D006449 4.6e-96 357.1 1112 27.6
CBR_g52378 Chara braunii HOM05D005223 ORTHO05D006449 1.4e-92 345.5 1130 27.6
FvH4_5g07460 Fragaria vesca HOM05D005223 ORTHO05D006449 1.3e-82 312.4 226 77.9
Cpa.g.sc52.34 Carica papaya HOM05D005223 ORTHO05D006449 2.9e-82 311.2 359 46.8
MBI11_g36316_MAGBIO Magnolia biondii HOM05D005223 ORTHO05D006449 5.5e-57 227.3 224 57.6
MD06G1153900 Malus domestica HOM05D005223 ORTHO05D006449 4.6e-48 197.6 194 61.3
Nn8g40428 Nelumbo nucifera HOM05D005223 ORTHO05D006449 1.1e-46 193.0 146 65.1
Lsat_1_v5_gn_0_22080 Lactuca sativa HOM05D005223 ORTHO05D006449 2.5e-38 165.2 149 51.7
QL10p005098 Quercus lobata HOM05D005223 ORTHO05D006449 2.8e-29 135.2 165 49.1
SEGI_02888 Sequoiadendron giganteum HOM05D005223 ORTHO05D006449 1.4e-25 122.9 220 35.5
Nn7g38107 Nelumbo nucifera HOM05D005223 ORTHO05D006449 2.5e-25 122.1 103 57.3
SEGI_05777 Sequoiadendron giganteum HOM05D005223 ORTHO05D006449 5.5e-25 120.9 179 38.5
Cre03.g186550 Chlamydomonas reinhardtii HOM05D005223 ORTHO05D006449 3.6e-24 118.2 425 27.5
SalBow5G3736 Salvia bowleyana HOM05D005223 ORTHO05D006449 8.0e-24 117.1 90 60.0
Actinidia25613 Actinidia chinensis HOM05D005223 ORTHO05D006449 3.9e-23 114.8 128 46.9
RcHm_v2.0_Chr0c39g0503251 Rosa chinensis HOM05D005223 ORTHO05D006449 4.4e-22 111.3 60 88.3
RcHm_v2.0_Chr1g0353191 Rosa chinensis HOM05D005223 ORTHO05D006449 4.4e-22 111.3 60 88.3
RcHm_v2.0_Chr1g0339741 Rosa chinensis HOM05D005223 ORTHO05D006449 1.1e-20 106.7 65 78.5
Lsat_1_v5_gn_1_114041 Lactuca sativa HOM05D005223 ORTHO05D006449 1.8e-20 105.9 111 48.6
SalBow1G2179 Salvia bowleyana HOM05D005223 ORTHO05D006449 2.0e-19 102.4 69 66.7
SalBow1G1130 Salvia bowleyana HOM05D005223 ORTHO05D006449 1.0e-18 100.1 69 65.2
ECA246G0437 Erigeron canadensis HOM05D005223 ORTHO05D006449 1.3e-18 99.8 215 38.1
RcHm_v2.0_Chr4g0412201 Rosa chinensis HOM05D005223 ORTHO05D006449 6.5e-18 97.4 65 73.8
Nn3g20975 Nelumbo nucifera HOM05D005223 ORTHO05D006449 1.6e-16 92.8 105 50.5
DCAR_016747 Daucus carota HOM05D000329 ORTHO05D006449 1.1e-12 80.1 75 50.7
HPP92_024695 Vanilla planifolia HOM05D005223 ORTHO05D006449 3.1e-12 78.6 148 39.2
AagrBONN_evm.TU.Sc2ySwM_228.970 Anthoceros agrestis HOM05D005223 ORTHO05D006449 4.1e-12 78.2 241 32.8
RcHm_v2.0_Chr6g0278011 Rosa chinensis HOM05D005223 ORTHO05D006449 4.5e-11 74.7 47 76.6
MD00G1179800 Malus domestica HOM05D005223 ORTHO05D006449 3.2e-09 68.6 98 45.9
MCO03G522 Micromonas commoda HOM05D005223 ORTHO05D006449 1.0e-07 63.5 1036 20.8
Nitab4.5_0004801g0040 Nicotiana tabacum HOM05D000112 ORTHO05D001327 1.0e-07 63.5 33 81.8
Actinidia19388 Actinidia chinensis HOM05D005223 ORTHO05D006449 4.0e-07 61.6 33 84.8


User provided reference genes

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