Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G3298 Fragaria x ananassa HOM05D000248 ORTHO05D012517 6.7e-103 377.5 208 100.0
FAN18G1596 Fragaria x ananassa HOM05D000248 ORTHO05D017958 2.0e-91 339.3 189 99.5
FAN13G1491 Fragaria x ananassa HOM05D000248 ORTHO05D000146 4.1e-76 288.5 202 77.7
FAN13G1701 Fragaria x ananassa HOM05D000248 ORTHO05D000146 4.1e-76 288.5 202 77.7
FAN13G0015 Fragaria x ananassa HOM05D000248 ORTHO05D012517 1.0e-74 283.9 202 80.2
FAN13G1884 Fragaria x ananassa HOM05D000248 ORTHO05D000146 1.0e-74 283.9 202 80.2
FAN13G2003 Fragaria x ananassa HOM05D000248 ORTHO05D000146 1.0e-74 283.9 202 79.7
FAN13G0180 Fragaria x ananassa HOM05D000248 ORTHO05D000146 2.2e-74 282.7 202 79.7
FAN13G2246 Fragaria x ananassa HOM05D000248 ORTHO05D000146 2.2e-74 282.7 202 79.7
FAN13G2559 Fragaria x ananassa HOM05D000248 ORTHO05D000146 2.2e-74 282.7 202 79.7
FAN13G3219 Fragaria x ananassa HOM05D000248 ORTHO05D000146 2.2e-74 282.7 202 79.7
FAN13G0044 Fragaria x ananassa HOM05D000529 ORTHO05D012517 8.5e-74 280.8 202 79.2
FAN13G2794 Fragaria x ananassa HOM05D000248 ORTHO05D000146 1.1e-73 280.4 202 79.2
FAN13G3019 Fragaria x ananassa HOM05D000248 ORTHO05D000146 1.1e-73 280.4 202 79.2
FAN08G3301 Fragaria x ananassa HOM05D000248 ORTHO05D017958 1.2e-64 250.4 166 79.5
RcHm_v2.0_Chr7g0186691 Rosa chinensis HOM05D000529 ORTHO05D012517 1.2e-56 223.8 200 66.0
FAN04G2500 Fragaria x ananassa HOM05D008495 ORTHO05D010311 1.5e-30 137.1 181 45.3
FAN13G1190 Fragaria x ananassa HOM05D008495 ORTHO05D012517 2.6e-30 136.3 196 44.4
FAN18G2317 Fragaria x ananassa HOM05D008495 ORTHO05D010311 7.6e-30 134.8 196 43.4
FvH4_5g11090 Fragaria vesca HOM05D001011 ORTHO05D035356 9.9e-30 134.4 196 43.4
FvH4_5g11160 Fragaria vesca HOM05D008495 ORTHO05D035356 9.9e-30 134.4 196 43.4
FAN08G0175 Fragaria x ananassa HOM05D030830 ORTHO05D035356 3.8e-29 132.5 198 41.4
FvH4_1g13660 Fragaria vesca HOM05D001084 ORTHO05D001275 4.2e-28 129.0 194 45.9
RcHm_v2.0_Chr7g0186621 Rosa chinensis HOM05D000529 ORTHO05D000628 1.6e-27 127.1 150 49.3
RcHm_v2.0_Chr2g0102741 Rosa chinensis HOM05D001084 ORTHO05D001275 2.1e-27 126.7 201 42.3
MD06G1115200 Malus domestica HOM05D000081 ORTHO05D000036 2.7e-27 126.3 188 43.6
Prupe.5G127900 Prunus persica HOM05D000529 ORTHO05D012517 3.0e-26 122.9 198 43.4
FAN18G0367 Fragaria x ananassa HOM05D000083 ORTHO05D025348 4.3e-25 119.0 184 39.1
FAN18G3041 Fragaria x ananassa HOM05D000083 ORTHO05D025348 5.6e-25 118.6 184 39.1
Prupe.5G127700 Prunus persica HOM05D000529 ORTHO05D010311 7.3e-25 118.2 193 41.5
FvH4_5g11250 Fragaria vesca HOM05D000306 ORTHO05D025348 1.2e-24 117.5 184 39.1
MD06G1115400 Malus domestica HOM05D000529 ORTHO05D025806 1.6e-24 117.1 184 44.6
FAN26G0747 Fragaria x ananassa HOM05D001563 ORTHO05D000761 2.8e-24 116.3 174 44.3
FAN13G2049 Fragaria x ananassa HOM05D000306 ORTHO05D025348 3.6e-24 115.9 201 37.8
FvH4_1g13670 Fragaria vesca HOM05D008495 ORTHO05D012517 4.7e-24 115.5 205 41.0
Prupe.7G138400 Prunus persica HOM05D000046 ORTHO05D025806 8.1e-24 114.8 177 44.6
FvH4_7g14830 Fragaria vesca HOM05D000166 ORTHO05D001532 1.4e-23 114.0 192 37.5
FAN08G1641 Fragaria x ananassa HOM05D000083 ORTHO05D025348 1.4e-23 114.0 196 37.2
FAN06G0627 Fragaria x ananassa HOM05D000166 ORTHO05D001532 5.3e-23 112.1 192 37.0
FAN23G1659 Fragaria x ananassa HOM05D000891 ORTHO05D000761 2.0e-22 110.2 194 39.7
FAN13G0066 Fragaria x ananassa HOM05D000248 ORTHO05D000146 4.4e-22 109.0 79 82.3
FAN13G1258 Fragaria x ananassa HOM05D000248 ORTHO05D000146 4.4e-22 109.0 79 82.3
FAN13G2226 Fragaria x ananassa HOM05D000248 ORTHO05D000146 4.4e-22 109.0 79 82.3
RcHm_v2.0_Chr2g0104561 Rosa chinensis HOM05D000046 ORTHO05D025806 7.6e-22 108.2 181 40.3
RcHm_v2.0_Chr1g0373981 Rosa chinensis HOM05D000614 ORTHO05D000463 2.2e-21 106.7 181 38.7
FvH4_5g11210 Fragaria vesca HOM05D000248 ORTHO05D000146 2.9e-21 106.3 151 39.7
FAN13G2367 Fragaria x ananassa HOM05D000248 ORTHO05D000146 2.9e-21 106.3 194 36.6
FAN18G3118 Fragaria x ananassa HOM05D000248 ORTHO05D000146 6.4e-21 105.1 204 36.8
FvH4_5g11100 Fragaria vesca HOM05D000248 ORTHO05D000146 1.1e-20 104.4 197 36.0
Prupe.5G127600 Prunus persica HOM05D000529 ORTHO05D010311 1.1e-20 104.4 155 43.2
FAN13G2308 Fragaria x ananassa HOM05D000248 ORTHO05D012517 7.1e-20 101.7 73 82.2
RcHm_v2.0_Chr2g0104611 Rosa chinensis HOM05D000046 ORTHO05D000472 7.1e-20 101.7 135 41.5
MD15G1278700 Malus domestica HOM05D000046 ORTHO05D025806 7.8e-19 98.2 198 39.4
FvH4_1g15330 Fragaria vesca HOM05D000529 ORTHO05D000472 3.9e-18 95.9 135 42.2
FAN19G2660 Fragaria x ananassa HOM05D000529 ORTHO05D000472 3.9e-18 95.9 135 42.2
MD02G1021700 Malus domestica HOM05D000041 ORTHO05D001532 5.1e-18 95.5 179 36.3
FAN26G0958 Fragaria x ananassa HOM05D000529 ORTHO05D000472 8.7e-18 94.7 135 40.7
MD02G1022000 Malus domestica HOM05D008495 ORTHO05D025806 3.3e-17 92.8 194 34.0
FvH4_7g26420 Fragaria vesca HOM05D008495 ORTHO05D046041 5.6e-17 92.0 149 38.9
MD06G1116000 Malus domestica HOM05D000054 ORTHO05D000286 7.3e-17 91.7 146 39.7
FAN06G0595 Fragaria x ananassa HOM05D000166 ORTHO05D001532 9.6e-17 91.3 183 34.4
RcHm_v2.0_Chr7g0186641 Rosa chinensis HOM05D000248 ORTHO05D000146 1.6e-16 90.5 184 35.3
FAN28G0579 Fragaria x ananassa HOM05D008495 ORTHO05D010311 2.1e-16 90.1 165 40.6
FvH4_1g15500 Fragaria vesca HOM05D000529 ORTHO05D000472 3.6e-16 89.4 139 39.6
FAN19G2196 Fragaria x ananassa HOM05D001084 ORTHO05D001275 3.6e-16 89.4 190 36.3
FAN18G0031 Fragaria x ananassa HOM05D008495 ORTHO05D010311 4.8e-16 89.0 100 47.0
RcHm_v2.0_Chr2g0102961 Rosa chinensis HOM05D000046 ORTHO05D020739 6.2e-16 88.6 121 44.6
FAN26G1753 Fragaria x ananassa HOM05D000046 ORTHO05D020739 8.1e-16 88.2 120 44.2
FAN23G2757 Fragaria x ananassa HOM05D000529 ORTHO05D010311 2.4e-15 86.7 165 40.6
RcHm_v2.0_Chr7g0186631 Rosa chinensis HOM05D008495 ORTHO05D017958 3.1e-15 86.3 128 40.6
FAN06G3151 Fragaria x ananassa HOM05D008495 ORTHO05D046041 4.0e-15 85.9 135 39.3
FAN23G0627 Fragaria x ananassa HOM05D000046 ORTHO05D020739 6.9e-15 85.1 122 42.6
Prupe.7G139800 Prunus persica HOM05D000529 ORTHO05D000472 1.5e-14 84.0 193 30.6
MD02G1165600 Malus domestica HOM05D000529 ORTHO05D000472 4.5e-14 82.4 179 33.5
Prupe.7G139500 Prunus persica HOM05D000529 ORTHO05D000472 7.6e-14 81.6 176 34.1
RcHm_v2.0_Chr2g0104621 Rosa chinensis HOM05D000046 ORTHO05D020635 2.9e-13 79.7 129 38.8
MD02G1164300 Malus domestica HOM05D000529 ORTHO05D000472 3.8e-13 79.3 121 39.7
FvH4_1g15160 Fragaria vesca HOM05D000529 ORTHO05D000472 4.9e-13 79.0 133 38.3
FAN23G2222 Fragaria x ananassa HOM05D000529 ORTHO05D000472 4.9e-13 79.0 141 40.4
FAN19G2554 Fragaria x ananassa HOM05D000529 ORTHO05D000472 6.4e-13 78.6 133 37.6
RcHm_v2.0_Chr2g0104741 Rosa chinensis HOM05D000529 ORTHO05D000472 8.4e-13 78.2 191 34.0
Prupe.7G138800 Prunus persica HOM05D000529 ORTHO05D000472 2.4e-12 76.6 172 33.7
FvH4_1g15120 Fragaria vesca HOM05D000529 ORTHO05D000472 4.2e-12 75.9 140 35.0
FvH4_1g15170 Fragaria vesca HOM05D000529 ORTHO05D000472 4.2e-12 75.9 141 39.7
FAN23G2692 Fragaria x ananassa HOM05D000529 ORTHO05D000472 4.2e-12 75.9 137 36.5
FAN28G0376 Fragaria x ananassa HOM05D000529 ORTHO05D000472 4.2e-12 75.9 140 39.3
FAN28G1580 Fragaria x ananassa HOM05D000529 ORTHO05D000472 4.2e-12 75.9 140 39.3
MD02G1164700 Malus domestica HOM05D000529 ORTHO05D000472 5.4e-12 75.5 121 38.8
RcHm_v2.0_Chr2g0104831 Rosa chinensis HOM05D000083 ORTHO05D002708 5.4e-12 75.5 145 35.2
MD15G1277700 Malus domestica HOM05D000529 ORTHO05D000472 7.1e-12 75.1 179 30.2
RcHm_v2.0_Chr2g0104171 Rosa chinensis HOM05D000529 ORTHO05D000472 7.1e-12 75.1 146 34.9
Prupe.7G139200 Prunus persica HOM05D000529 ORTHO05D000472 9.3e-12 74.7 175 31.4
RcHm_v2.0_Chr2g0104731 Rosa chinensis HOM05D000577 ORTHO05D003509 9.3e-12 74.7 202 29.2
arahy.Tifrunner.gnm1.ann1.KL9X3Y Arachis hypogaea HOM05D003581 ORTHO05D004332 1.2e-11 74.3 133 34.6
FvH4_1g15220 Fragaria vesca HOM05D000529 ORTHO05D000472 1.2e-11 74.3 137 36.5
RcHm_v2.0_Chr7g0212121 Rosa chinensis HOM05D000026 ORTHO05D001436 1.2e-11 74.3 130 40.0
MD02G1165300 Malus domestica HOM05D000529 ORTHO05D000472 1.6e-11 73.9 138 33.3
FAN28G0855 Fragaria x ananassa HOM05D000529 ORTHO05D000472 2.1e-11 73.6 137 35.8
FAN19G2597 Fragaria x ananassa HOM05D000529 ORTHO05D000472 2.7e-11 73.2 137 35.8
RcHm_v2.0_Chr3g0480561 Rosa chinensis HOM05D000529 ORTHO05D000472 2.7e-11 73.2 177 31.6
FAN26G3207 Fragaria x ananassa HOM05D000529 ORTHO05D000472 3.5e-11 72.8 140 32.1
MD02G1166100 Malus domestica HOM05D000529 ORTHO05D000472 3.5e-11 72.8 179 30.7
MD15G1277400 Malus domestica HOM05D000529 ORTHO05D000472 4.6e-11 72.4 173 30.6
RcHm_v2.0_Chr2g0104181 Rosa chinensis HOM05D000529 ORTHO05D000472 4.6e-11 72.4 149 34.2
MD02G1164800 Malus domestica HOM05D000529 ORTHO05D000472 6.0e-11 72.0 138 32.6
MD02G1166300 Malus domestica HOM05D000529 ORTHO05D000472 6.0e-11 72.0 181 29.8
RcHm_v2.0_Chr2g0143661 Rosa chinensis HOM05D003771 ORTHO05D010311 6.0e-11 72.0 140 35.7
RcHm_v2.0_Chr2g0104761 Rosa chinensis HOM05D000529 ORTHO05D000472 1.8e-10 70.5 121 38.0
MD15G1278000 Malus domestica HOM05D000529 ORTHO05D000472 2.3e-10 70.1 173 30.1
RcHm_v2.0_Chr6g0296131 Rosa chinensis HOM05D021820 ORTHO05D029631 2.3e-10 70.1 115 38.3
FvH4_5g11220 Fragaria vesca HOM05D000248 ORTHO05D017958 3.0e-10 69.7 127 35.4
FvH4_5g11180 Fragaria vesca HOM05D000248 ORTHO05D010311 3.9e-10 69.3 154 34.4
FAN18G4033 Fragaria x ananassa HOM05D000248 ORTHO05D017958 3.9e-10 69.3 137 35.0
FvH4_5g11200 Fragaria vesca HOM05D000248 ORTHO05D017958 5.1e-10 68.9 137 35.0
Prupe.7G139700 Prunus persica HOM05D000529 ORTHO05D000472 5.1e-10 68.9 132 35.6
MD15G1276900 Malus domestica HOM05D000529 ORTHO05D000472 6.7e-10 68.6 119 37.8
Prupe.7G139600 Prunus persica HOM05D000529 ORTHO05D000472 6.7e-10 68.6 144 35.4
RcHm_v2.0_Chr2g0104191 Rosa chinensis HOM05D000529 ORTHO05D000472 6.7e-10 68.6 143 33.6
FAN13G2602 Fragaria x ananassa HOM05D000248 ORTHO05D017958 1.1e-09 67.8 157 32.5
RcHm_v2.0_Chr6g0285471 Rosa chinensis HOM05D000529 ORTHO05D000472 1.5e-09 67.4 139 33.8
FAN26G2300 Fragaria x ananassa HOM05D000046 ORTHO05D020635 1.9e-09 67.0 113 36.3
MD02G1165500 Malus domestica HOM05D000529 ORTHO05D000472 1.9e-09 67.0 132 34.8
FvH4_1g15430 Fragaria vesca HOM05D000046 ORTHO05D020635 2.5e-09 66.6 113 36.3
FvH4_5g11120 Fragaria vesca HOM05D000248 ORTHO05D017958 2.5e-09 66.6 148 31.8
FvH4_5g11230 Fragaria vesca HOM05D000248 ORTHO05D017958 2.5e-09 66.6 148 31.8
FAN23G2720 Fragaria x ananassa HOM05D000046 ORTHO05D020635 2.5e-09 66.6 113 36.3
FAN19G2244 Fragaria x ananassa HOM05D000046 ORTHO05D020635 3.3e-09 66.2 116 36.2
RcHm_v2.0_Chr7g0230551 Rosa chinensis HOM05D000529 ORTHO05D010311 3.3e-09 66.2 125 33.6
RcHm_v2.0_Chr2g0104381 Rosa chinensis HOM05D000529 ORTHO05D000472 4.3e-09 65.9 112 36.6
MD02G1165900 Malus domestica HOM05D000529 ORTHO05D010311 5.6e-09 65.5 139 30.9
FAN08G1780 Fragaria x ananassa HOM05D000529 ORTHO05D010311 9.6e-09 64.7 130 33.1
Manes.12G094100 Manihot esculenta HOM05D000529 ORTHO05D000472 9.6e-09 64.7 136 33.1
RcHm_v2.0_Chr2g0104151 Rosa chinensis HOM05D000529 ORTHO05D000472 9.6e-09 64.7 129 33.3
RcHm_v2.0_Chr2g0104431 Rosa chinensis HOM05D000529 ORTHO05D000472 9.6e-09 64.7 140 36.4
FvH4_1g15230 Fragaria vesca HOM05D000529 ORTHO05D000472 2.1e-08 63.5 140 35.0
FAN18G1889 Fragaria x ananassa HOM05D000529 ORTHO05D010311 2.8e-08 63.2 130 33.1
MD15G1278100 Malus domestica HOM05D000529 ORTHO05D000472 2.8e-08 63.2 187 27.3
RcHm_v2.0_Chr2g0104391 Rosa chinensis HOM05D000529 ORTHO05D000472 2.8e-08 63.2 152 32.9
FAN26G2562 Fragaria x ananassa HOM05D000046 ORTHO05D207025 3.7e-08 62.8 113 33.6
FvH4_1g15090 Fragaria vesca HOM05D000529 ORTHO05D000472 4.8e-08 62.4 72 47.2
FAN15G2844 Fragaria x ananassa HOM05D014919 ORTHO05D029631 6.2e-08 62.0 134 31.3
FAN28G0545 Fragaria x ananassa HOM05D000529 ORTHO05D000472 6.2e-08 62.0 116 39.7
RcHm_v2.0_Chr3g0480541 Rosa chinensis HOM05D000529 ORTHO05D000472 6.2e-08 62.0 140 35.0
FvH4_1g15270 Fragaria vesca HOM05D000046 ORTHO05D010311 8.1e-08 61.6 128 32.8
RcHm_v2.0_Chr1g0326431 Rosa chinensis HOM05D000529 ORTHO05D000472 8.1e-08 61.6 174 28.7
arahy.Tifrunner.gnm1.ann1.AANK3P Arachis hypogaea HOM05D000033 ORTHO05D083727 1.1e-07 61.2 177 27.7
FvH4_1g15350 Fragaria vesca HOM05D008495 ORTHO05D010311 1.4e-07 60.8 130 32.3
MD02G1165400 Malus domestica HOM05D000529 ORTHO05D000472 1.4e-07 60.8 118 35.6
RcHm_v2.0_Chr7g0230651 Rosa chinensis HOM05D000529 ORTHO05D010311 1.4e-07 60.8 121 35.5
CiPaw.01G024600 Carya illinoinensis HOM05D000529 ORTHO05D000472 1.8e-07 60.5 183 27.3
FAN28G0950 Fragaria x ananassa HOM05D000046 ORTHO05D020635 1.8e-07 60.5 84 42.9
FAN28G1384 Fragaria x ananassa HOM05D008495 ORTHO05D020739 1.8e-07 60.5 67 47.8
FvH4_5g32830 Fragaria vesca HOM05D000529 ORTHO05D010311 2.4e-07 60.1 129 31.8
RcHm_v2.0_Chr2g0104121 Rosa chinensis HOM05D000529 ORTHO05D000472 3.1e-07 59.7 137 29.9
Ciclev10024907m.g Citrus clementina HOM05D000529 ORTHO05D000472 4.0e-07 59.3 102 34.3
FAN04G0459 Fragaria x ananassa HOM05D000529 ORTHO05D010311 4.0e-07 59.3 129 31.0
arahy.Tifrunner.gnm1.ann1.3N9TDM Arachis hypogaea HOM05D000033 ORTHO05D019823 5.3e-07 58.9 138 29.0
arahy.Tifrunner.gnm1.ann1.RP061L Arachis hypogaea HOM05D000033 ORTHO05D038917 5.3e-07 58.9 138 29.0
FAN24G0449 Fragaria x ananassa HOM05D014919 ORTHO05D029631 5.3e-07 58.9 133 31.6
CANSAT01G2617 Cannabis sativa HOM05D000529 ORTHO05D000472 9.0e-07 58.2 187 26.7
CiPaw.01G025100 Carya illinoinensis HOM05D000529 ORTHO05D000472 1.2e-06 57.8 184 30.4
FAN08G3343 Fragaria x ananassa HOM05D000529 ORTHO05D010311 1.2e-06 57.8 123 31.7
arahy.Tifrunner.gnm1.ann1.50YJF0 Arachis hypogaea HOM05D000033 ORTHO05D085538 1.5e-06 57.4 197 24.4
Dinv29950 Davidia involucrata HOM05D000529 ORTHO05D000472 1.5e-06 57.4 133 28.6
RcHm_v2.0_Chr7g0230541 Rosa chinensis HOM05D000529 ORTHO05D010311 1.5e-06 57.4 130 30.0
Prupe.5G127800 Prunus persica HOM05D008495 ORTHO05D010311 2.0e-06 57.0 136 33.8
QL01p034712 Quercus lobata HOM05D000529 ORTHO05D000472 2.0e-06 57.0 80 35.0
Dinv39897 Davidia involucrata HOM05D000529 ORTHO05D000472 2.6e-06 56.6 104 30.8
FAN19G2325 Fragaria x ananassa HOM05D000529 ORTHO05D010311 3.4e-06 56.2 135 34.8
FvH4_5g32820 Fragaria vesca HOM05D000529 ORTHO05D010311 4.5e-06 55.8 123 30.9
FvH4_1g15481 Fragaria vesca HOM05D008495 ORTHO05D035435 7.6e-06 55.1 91 39.6
QL06p042829 Quercus lobata HOM05D000529 ORTHO05D000472 7.6e-06 55.1 82 37.8
CiPaw.01G103200 Carya illinoinensis HOM05D000529 ORTHO05D000472 9.9e-06 54.7 183 26.8
FvH4_5g32810 Fragaria vesca HOM05D000529 ORTHO05D010311 9.9e-06 54.7 117 33.3
Prupe.7G139100 Prunus persica HOM05D000529 ORTHO05D000472 9.9e-06 54.7 113 36.3
RhsimUnG0071100 Rhododendron simsii HOM05D000529 ORTHO05D000472 9.9e-06 54.7 132 29.5
RcHm_v2.0_Chr7g0230701 Rosa chinensis HOM05D000529 ORTHO05D010311 9.9e-06 54.7 124 30.6


User provided reference genes

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