Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G3280 Fragaria x ananassa HOM05D005158 ORTHO05D005510 3.9e-221 771.2 391 100.0
FvH4_5g11940 Fragaria vesca HOM05D005158 ORTHO05D005510 9.4e-207 723.4 391 95.4
FAN18G4517 Fragaria x ananassa HOM05D005158 ORTHO05D005510 1.8e-205 719.2 399 93.7
FAN13G1699 Fragaria x ananassa HOM05D005158 ORTHO05D005510 5.3e-186 654.4 426 82.6
FvH4_4g32690 Fragaria vesca HOM05D005158 ORTHO05D005510 3.7e-171 605.1 419 78.8
FAN12G3950 Fragaria x ananassa HOM05D005158 ORTHO05D005510 9.1e-170 600.5 401 79.8
RcHm_v2.0_Chr4g0441611 Rosa chinensis HOM05D005158 ORTHO05D005510 9.1e-170 600.5 410 79.3
FAN17G2123 Fragaria x ananassa HOM05D005158 ORTHO05D005510 3.5e-169 598.6 419 77.3
FAN08G3331 Fragaria x ananassa HOM05D005158 ORTHO05D005510 1.0e-168 597.0 383 83.3
FAN13G2578 Fragaria x ananassa HOM05D005158 ORTHO05D005510 2.1e-158 562.8 426 74.4
FAN22G1395 Fragaria x ananassa HOM05D005158 ORTHO05D005510 2.2e-155 552.7 408 74.5
Prupe.1G327200 Prunus persica HOM05D005158 ORTHO05D005510 1.6e-150 536.6 409 70.2
MD16G1026300 Malus domestica HOM05D005158 ORTHO05D005510 4.3e-143 511.9 398 69.1
QL03p033448 Quercus lobata HOM05D005158 ORTHO05D005510 2.7e-137 492.7 359 71.6
TAR374G1701 Trochodendron aralioides HOM05D005158 ORTHO05D005510 1.7e-136 490.0 359 69.1
CSS0029988 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 6.6e-136 488.0 358 69.6
Ciclev10015117m.g Citrus clementina HOM05D005158 ORTHO05D005510 8.6e-136 487.6 359 68.2
Duzib251G0375 Durio zibethinus HOM05D005158 ORTHO05D005510 2.1e-134 483.0 356 69.4
Manes.17G078700 Manihot esculenta HOM05D005158 ORTHO05D005510 2.1e-134 483.0 355 69.3
Actinidia36249 Actinidia chinensis HOM05D005158 ORTHO05D005510 2.4e-133 479.6 362 67.1
GSVIVG01011734001 Vitis vinifera HOM05D005158 ORTHO05D005510 2.4e-133 479.6 355 69.3
COL.COLO4_13149 Corchorus olitorius HOM05D005158 ORTHO05D005510 1.5e-132 476.9 357 69.5
Dinv28033 Davidia involucrata HOM05D005158 ORTHO05D005510 4.9e-131 471.9 309 77.0
Potri.010G111100 Populus trichocarpa HOM05D005158 ORTHO05D005510 8.4e-131 471.1 358 67.6
Nn4g24217 Nelumbo nucifera HOM05D005158 ORTHO05D005510 1.2e-129 467.2 354 65.3
Sabra10G0081500 Salix brachista HOM05D005158 ORTHO05D005510 2.7e-129 466.1 357 67.2
vmacro00408 Vaccinium macrocarpon HOM05D005158 ORTHO05D005510 2.3e-128 463.0 421 59.4
CANSAT64G2776 Cannabis sativa HOM05D005158 ORTHO05D005510 3.9e-128 462.2 359 65.2
Eucgr.G02179 Eucalyptus grandis HOM05D005158 ORTHO05D005510 1.9e-127 459.9 356 66.3
HanXRQChr08g0212241 Helianthus annuus HOM05D005158 ORTHO05D005510 7.3e-127 458.0 359 64.3
Cc11_g08400 Coffea canephora HOM05D005158 ORTHO05D005510 2.8e-126 456.1 354 66.4
MD06G1226600 Malus domestica HOM05D005158 ORTHO05D005510 4.8e-126 455.3 360 63.9
Haze_10977 Corylus avellana HOM05D005158 ORTHO05D005510 6.2e-126 454.9 339 68.7
QL10p028515 Quercus lobata HOM05D005158 ORTHO05D005510 2.4e-125 453.0 358 64.5
CiPaw.05G195800 Carya illinoinensis HOM05D005158 ORTHO05D005510 4.0e-125 452.2 327 68.8
RcHm_v2.0_Chr7g0178481 Rosa chinensis HOM05D005158 ORTHO05D005510 9.0e-125 451.1 358 64.0
Ciclev10008271m.g Citrus clementina HOM05D005158 ORTHO05D005510 1.2e-124 450.7 360 63.6
Cc11_g08410 Coffea canephora HOM05D005158 ORTHO05D005510 1.5e-124 450.3 354 65.8
GSVIVG01008427001 Vitis vinifera HOM05D005158 ORTHO05D005510 2.6e-124 449.5 356 62.9
FvH4_5g17290 Fragaria vesca HOM05D005158 ORTHO05D005510 4.4e-124 448.7 357 63.6
FAN04G1228 Fragaria x ananassa HOM05D005158 ORTHO05D005510 4.4e-124 448.7 356 63.2
Dinv27619 Davidia involucrata HOM05D005158 ORTHO05D005510 3.8e-123 445.7 358 63.4
SalBow8G1650 Salvia bowleyana HOM05D005158 ORTHO05D005510 4.9e-123 445.3 356 63.8
CSS0001942 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 6.4e-123 444.9 304 72.7
Phvul.003G032200 Phaseolus vulgaris HOM05D005158 ORTHO05D005510 6.4e-123 444.9 352 66.8
COL.COLO4_37683 Corchorus olitorius HOM05D000282 ORTHO05D005510 1.1e-122 444.1 360 61.9
Cfa008628 Carpinus fangiana HOM05D005158 ORTHO05D005510 1.4e-122 443.7 304 73.4
PGR119G0382 Punica granatum HOM05D005158 ORTHO05D005510 1.9e-122 443.4 363 63.6
SalBow8G5629 Salvia bowleyana HOM05D005158 ORTHO05D005510 2.4e-122 443.0 356 63.2
CSS0029687 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 2.1e-121 439.9 380 60.5
Thecc.03G054800 Theobroma cacao HOM05D005158 ORTHO05D005510 4.6e-121 438.7 361 62.3
Carub.0002s1765 Capsella rubella HOM05D005158 ORTHO05D005510 6.0e-121 438.3 360 61.7
PSO478G5200 Papaver somniferum HOM05D005158 ORTHO05D005510 2.3e-120 436.4 352 63.4
Lj2g0016958 Lotus japonicus HOM05D005158 ORTHO05D005510 3.0e-120 436.0 354 63.8
Lsat_1_v5_gn_8_45001 Lactuca sativa HOM05D005158 ORTHO05D005510 3.9e-120 435.6 354 63.3
Lj6A744G51 Lonicera japonica HOM05D005158 ORTHO05D005510 3.9e-120 435.6 341 65.7
Sc14g0007050 Simmondsia chinensis HOM05D005158 ORTHO05D005510 5.1e-120 435.3 352 63.9
PSO017G1154 Papaver somniferum HOM05D005158 ORTHO05D005510 6.6e-120 434.9 325 67.1
MSTRG.13599 Avicennia marina HOM05D005158 ORTHO05D005510 1.5e-119 433.7 317 67.8
Sc14g0006290 Simmondsia chinensis HOM05D005158 ORTHO05D005510 1.5e-119 433.7 352 63.6
CiPaw.15G143000 Carya illinoinensis HOM05D005158 ORTHO05D005510 4.3e-119 432.2 355 62.5
Duzib205G1388 Durio zibethinus HOM05D005158 ORTHO05D005510 1.6e-118 430.3 360 60.6
Migut.L00352 Erythranthe guttata HOM05D005158 ORTHO05D005510 2.1e-118 429.9 371 60.4
Aqoxy3G00071 Aquilegia oxysepala HOM05D005158 ORTHO05D005510 2.8e-118 429.5 361 61.8
Sabra15G0037900 Salix brachista HOM05D005158 ORTHO05D005510 2.8e-118 429.5 385 58.2
CAN.G236.18 Capsicum annuum HOM05D005158 ORTHO05D005510 1.8e-117 426.8 358 62.3
Lalb_Chr17g0338591 Lupinus albus HOM05D005158 ORTHO05D005510 1.8e-117 426.8 353 62.3
Sopen05g014580 Solanum pennellii HOM05D005158 ORTHO05D005510 2.0e-116 423.3 359 62.1
TWI75G0580 Tripterygium wilfordii HOM05D005158 ORTHO05D005510 2.0e-116 423.3 292 69.5
Atru.chr9.1740 Acer truncatum HOM05D005158 ORTHO05D005510 3.8e-115 419.1 325 65.2
Haze_18844 Corylus avellana HOM05D005158 ORTHO05D005510 1.4e-114 417.2 405 56.3
HanXRQChr08g0212251 Helianthus annuus HOM05D005158 ORTHO05D005510 1.9e-114 416.8 359 61.6
FAN18G0401 Fragaria x ananassa HOM05D005158 ORTHO05D005510 3.2e-114 416.0 304 67.1
SGA_v2.0_scaffold234G43623 Striga asiatica HOM05D005158 ORTHO05D005510 9.3e-114 414.5 358 61.2
ECA233G1067 Erigeron canadensis HOM05D005158 ORTHO05D005510 1.3e-112 410.6 329 63.2
MELO3C014995.2 Cucumis melo HOM05D005158 ORTHO05D005510 3.0e-112 409.5 351 60.1
CsaV3_5G015040 Cucumis sativus L. HOM05D005158 ORTHO05D005510 3.9e-112 409.1 357 59.4
Sed0000270 Sechium edule HOM05D005158 ORTHO05D005510 5.6e-111 405.2 354 59.9
ClCG07G007220 Citrullus lanatus HOM05D005158 ORTHO05D005510 1.6e-110 403.7 355 59.4
Oeu046166.1 Olea europaea HOM05D005158 ORTHO05D005510 3.7e-110 402.5 354 57.1
MSTRG.4576 Avicennia marina HOM05D005158 ORTHO05D005510 4.8e-110 402.1 354 59.0
AUR62014187 Chenopodium quinoa HOM05D005158 ORTHO05D005510 4.0e-109 399.1 325 61.2
Cc04_g06310 Coffea canephora HOM05D005158 ORTHO05D005510 4.0e-109 399.1 357 60.2
ATR0665G468 Amborella trichopoda HOM05D005158 ORTHO05D005510 2.0e-108 396.7 356 59.0
Migut.D01553 Erythranthe guttata HOM05D005158 ORTHO05D005510 4.5e-108 395.6 355 56.9
CDE05G1850 Ceratophyllum demersum HOM05D005158 ORTHO05D005510 6.5e-107 391.7 355 58.9
CSS0046275 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 7.9e-105 384.8 342 59.4
Ah.02g127790 Amaranthus hybridus HOM05D005158 ORTHO05D005510 1.0e-104 384.4 320 61.2
Rhsim09G0065900 Rhododendron simsii HOM05D005158 ORTHO05D005510 5.1e-104 382.1 258 72.5
Rhsim09G0065800 Rhododendron simsii HOM05D005158 ORTHO05D005510 9.6e-103 377.9 258 72.5
VMungo1215G0718 Vigna mungo HOM05D005158 ORTHO05D005510 1.4e-98 364.0 355 56.6
Hund20682 Selenicereus undatus HOM05D005158 ORTHO05D005510 1.9e-98 363.6 293 63.1
SalBow1G1317 Salvia bowleyana HOM05D005158 ORTHO05D005510 5.5e-98 362.1 304 59.5
AUR62039517 Chenopodium quinoa HOM05D005158 ORTHO05D005510 3.0e-96 356.3 381 51.2
Os03g0707200 Oryza sativa ssp. japonica HOM05D005158 ORTHO05D005510 7.4e-95 351.7 304 58.2
Peaxi162Scf00159g01112 Petunia axillaris HOM05D005158 ORTHO05D005510 3.0e-88 329.7 258 64.0
Prupe.5G232900 Prunus persica HOM05D005158 ORTHO05D005510 2.7e-81 306.6 235 63.4
Dinv14415 Davidia involucrata HOM05D005158 ORTHO05D005510 1.6e-73 280.8 359 49.0
HPP92_016306 Vanilla planifolia HOM05D005158 ORTHO05D005510 6.7e-72 275.4 320 50.0
Solyc05g017900.3 Solanum lycopersicum HOM05D005158 ORTHO05D005510 1.5e-71 274.2 226 63.3
Thecc.02G284700 Theobroma cacao HOM05D005158 ORTHO05D005510 2.4e-69 266.9 224 60.7
Potri.008G130950 Populus trichocarpa HOM05D005158 ORTHO05D005510 2.0e-68 263.8 296 50.0
AUR62014186 Chenopodium quinoa HOM05D005158 ORTHO05D005510 1.1e-66 258.1 295 48.8
Pp3c5_19920 Physcomitrium patens HOM05D005158 ORTHO05D005510 4.2e-66 256.1 323 42.1
FAN07G0555 Fragaria x ananassa HOM05D005158 ORTHO05D005510 6.8e-64 248.8 212 69.8
Zm00001eb054470 Zea mays HOM05D005158 ORTHO05D005510 1.8e-61 240.7 220 55.5
HPP92_016287 Vanilla planifolia HOM05D005158 ORTHO05D005510 3.5e-60 236.5 242 51.2
Oeu014055.2 Olea europaea HOM05D005158 ORTHO05D005510 5.2e-56 222.6 189 58.7
Oeu003374.1 Olea europaea HOM05D005158 ORTHO05D005510 3.3e-50 203.4 161 65.8
SEGI_17459 Sequoiadendron giganteum HOM05D005158 ORTHO05D005510 6.1e-49 199.1 204 50.5
PRCOL_00003969 Prasinoderma coloniale HOM05D005158 ORTHO05D005510 1.2e-47 194.9 360 37.2
AagrBONN_evm.TU.Sc2ySwM_344.3657 Anthoceros agrestis HOM05D005158 ORTHO05D005510 4.4e-47 193.0 256 41.4
Cpa.g.sc570.2 Carica papaya HOM05D005158 ORTHO05D005510 1.2e-44 184.9 221 47.5
Manes.06G007150 Manihot esculenta HOM05D005158 ORTHO05D005510 8.9e-40 168.7 200 50.0
Zm00001eb280420 Zea mays HOM05D005158 ORTHO05D005510 5.4e-37 159.5 161 52.2
HPP92_027195 Vanilla planifolia HOM05D005158 ORTHO05D005510 5.0e-35 152.9 191 47.1
HanXRQChr08g0212291 Helianthus annuus HOM05D005158 ORTHO05D005510 4.0e-32 143.3 111 63.1
Duzib068G0898 Durio zibethinus HOM05D005158 ORTHO05D005510 3.5e-28 130.2 174 44.3
Os06g0269200 Oryza sativa ssp. japonica HOM05D005158 ORTHO05D005510 5.6e-26 122.9 82 68.3
TAR622G0559 Trochodendron aralioides HOM05D005158 ORTHO05D005510 2.1e-25 120.9 228 36.4
Gohir.D02G122150 Gossypium hirsutum HOM05D005158 ORTHO05D005510 8.1e-25 119.0 194 40.7
PGR044G0956 Punica granatum HOM05D005158 ORTHO05D005510 8.1e-25 119.0 214 37.9
MD16G1025900 Malus domestica HOM05D005158 ORTHO05D005510 5.2e-24 116.3 95 66.3
Pp3c9_21990 Physcomitrium patens HOM05D005158 ORTHO05D005510 1.3e-22 111.7 388 27.6
Prupe.5G232800 Prunus persica HOM05D005158 ORTHO05D005510 1.3e-22 111.7 108 55.6
DCAR_007307 Daucus carota HOM05D005158 ORTHO05D005510 3.8e-22 110.2 99 59.6
Thecc.02G284900 Theobroma cacao HOM05D005158 ORTHO05D005510 4.9e-22 109.8 77 68.8
Gorai.005G131900 Gossypium raimondii HOM05D005158 ORTHO05D005510 8.4e-22 109.0 145 43.4
Peaxi162Scf00159g01110 Petunia axillaris HOM05D005158 ORTHO05D005510 3.2e-21 107.1 98 60.2
C06p44960 Brassica napus HOM05D005158 ORTHO05D005510 9.2e-21 105.5 64 78.1
PRCOL_00000423 Prasinoderma coloniale HOM05D005158 ORTHO05D005510 2.1e-20 104.4 204 35.3
Solyc05g017940.3 Solanum lycopersicum HOM05D005158 ORTHO05D005510 2.7e-20 104.0 102 54.9
MCO07G148 Micromonas commoda HOM05D005158 ORTHO05D005510 3.3e-18 97.1 182 32.4
HanXRQChr08g0212271 Helianthus annuus HOM05D005158 ORTHO05D005510 3.1e-16 90.5 80 61.2
Manes.09G075257 Manihot esculenta HOM05D005158 ORTHO05D005510 2.0e-15 87.8 58 69.0
RcHm_v2.0_Chr7g0199801 Rosa chinensis HOM05D005158 ORTHO05D005510 2.0e-15 87.8 58 67.2
MCO04G437 Micromonas commoda HOM05D005158 ORTHO05D005510 1.1e-10 72.0 340 25.6
Cpa.g.sc130.33 Carica papaya HOM05D005158 ORTHO05D005510 1.6e-09 68.2 51 66.7
Aqoxy2G01678 Aquilegia oxysepala HOM05D005158 ORTHO05D005510 2.8e-09 67.4 63 46.0
Pp3c15_24210 Physcomitrium patens HOM05D005158 ORTHO05D005510 5.3e-08 63.2 274 24.8
AagrBONN_evm.TU.Sc2ySwM_117.460 Anthoceros agrestis HOM05D005158 ORTHO05D005510 9.0e-08 62.4 376 24.2
MCO07G404 Micromonas commoda HOM05D005158 ORTHO05D005510 6.4e-06 56.2 277 23.1


User provided reference genes

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