Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G3246 Fragaria x ananassa HOM05D007277 ORTHO05D006336 9.1e-84 313.5 160 100.0
FvH4_5g13140 Fragaria vesca HOM05D007277 ORTHO05D006336 2.0e-83 312.4 160 99.4
FAN18G2501 Fragaria x ananassa HOM05D007277 ORTHO05D006336 2.3e-79 298.9 160 96.2
FvH4_5g13230 Fragaria vesca HOM05D007277 ORTHO05D006336 1.5e-78 296.2 160 95.0
FvH4_5g13170 Fragaria vesca HOM05D007277 ORTHO05D006336 1.3e-77 293.1 160 94.4
FAN08G1790 Fragaria x ananassa HOM05D007277 ORTHO05D006336 7.3e-73 277.3 156 93.6
FAN18G2870 Fragaria x ananassa HOM05D000423 ORTHO05D000284 8.9e-71 270.4 154 90.9
FAN18G0686 Fragaria x ananassa HOM05D007277 ORTHO05D006336 6.4e-69 264.2 156 88.5
FvH4_5g13130 Fragaria vesca HOM05D007277 ORTHO05D006336 7.0e-68 260.8 156 87.2
FvH4_5g13190 Fragaria vesca HOM05D007277 ORTHO05D013598 2.3e-58 229.2 133 91.0
FvH4_5g13220 Fragaria vesca HOM05D007277 ORTHO05D006336 1.9e-44 183.0 134 78.4
FAN13G2869 Fragaria x ananassa HOM05D007277 ORTHO05D006336 6.2e-32 141.4 127 60.6
FAN08G1781 Fragaria x ananassa HOM05D007277 ORTHO05D006336 2.2e-29 132.9 108 61.1
FvH4_5g13221 Fragaria vesca HOM05D007277 ORTHO05D006336 2.4e-28 129.4 130 55.4
RcHm_v2.0_Chr7g0240781 Rosa chinensis HOM05D007277 ORTHO05D006336 5.4e-28 128.3 108 59.3
RcHm_v2.0_Chr7g0241491 Rosa chinensis HOM05D007277 ORTHO05D006336 6.0e-27 124.8 152 47.4
FAN08G3205 Fragaria x ananassa HOM05D007277 ORTHO05D006336 7.4e-25 117.9 125 54.4
Prupe.6G011800 Prunus persica HOM05D007277 ORTHO05D006336 3.7e-24 115.5 137 51.8
Prupe.1G109400 Prunus persica HOM05D007277 ORTHO05D006336 8.1e-24 114.4 131 51.9
Prupe.6G011200 Prunus persica HOM05D007277 ORTHO05D006336 8.1e-24 114.4 115 53.9
MD03G1011400 Malus domestica HOM05D007277 ORTHO05D006336 1.8e-23 113.2 114 52.6
MD11G1013400 Malus domestica HOM05D007277 ORTHO05D006336 1.2e-22 110.5 116 52.6
MD11G1013900 Malus domestica HOM05D007277 ORTHO05D006336 4.5e-22 108.6 165 44.2
FAN08G2286 Fragaria x ananassa HOM05D007277 ORTHO05D006336 7.6e-22 107.8 93 59.1
MD03G1009100 Malus domestica HOM05D007277 ORTHO05D006336 7.6e-22 107.8 131 46.6
MD03G1009500 Malus domestica HOM05D007277 ORTHO05D006336 1.3e-21 107.1 117 53.0
QL07p042879 Quercus lobata HOM05D007277 ORTHO05D006336 1.3e-21 107.1 175 40.0
Ciclev10024167m.g Citrus clementina HOM05D007277 ORTHO05D006336 1.7e-21 106.7 155 42.6
QL07p042995 Quercus lobata HOM05D007277 ORTHO05D006336 1.7e-21 106.7 111 50.5
Ciclev10029817m.g Citrus clementina HOM05D007277 ORTHO05D006336 3.8e-21 105.5 155 42.6
MD03G1010100 Malus domestica HOM05D007277 ORTHO05D006336 8.4e-21 104.4 120 50.8
Prupe.6G011700 Prunus persica HOM05D007277 ORTHO05D006336 8.4e-21 104.4 114 52.6
MD14G1141800 Malus domestica HOM05D007277 ORTHO05D006336 1.4e-20 103.6 114 50.9
Thecc.03G110900 Theobroma cacao HOM05D007277 ORTHO05D006336 1.5e-17 93.6 158 43.7
FAN18G0842 Fragaria x ananassa HOM05D007277 ORTHO05D006336 4.3e-17 92.0 154 39.6
QL07p042928 Quercus lobata HOM05D007277 ORTHO05D006336 4.3e-17 92.0 111 47.7
QL07p042903 Quercus lobata HOM05D007277 ORTHO05D006336 7.4e-17 91.3 111 50.5
FAN18G1844 Fragaria x ananassa HOM05D007277 ORTHO05D006336 9.6e-17 90.9 124 49.2
QL07p042908 Quercus lobata HOM05D007277 ORTHO05D006336 1.3e-16 90.5 174 39.1
FAN08G2638 Fragaria x ananassa HOM05D007277 ORTHO05D006336 8.2e-16 87.8 86 53.5
MD12G1151700 Malus domestica HOM05D007277 ORTHO05D006336 1.1e-15 87.4 114 46.5
FvH4_5g13160 Fragaria vesca HOM05D007277 ORTHO05D006336 1.8e-15 86.7 87 64.4
COL.COLO4_28831 Corchorus olitorius HOM05D007277 ORTHO05D006336 5.3e-15 85.1 145 43.4
QL09p028728 Quercus lobata HOM05D007277 ORTHO05D006336 5.3e-15 85.1 179 36.3
Haze_24863 Corylus avellana HOM05D000010 ORTHO05D006336 9.0e-15 84.3 138 39.1
Dinv38624 Davidia involucrata HOM05D007277 ORTHO05D006336 2.6e-14 82.8 115 42.6
FvH4_5g13223 Fragaria vesca HOM05D007277 ORTHO05D006336 3.4e-14 82.4 134 43.3
QL07p042874 Quercus lobata HOM05D007277 ORTHO05D006336 3.4e-14 82.4 158 37.3
QL07p042983 Quercus lobata HOM05D007277 ORTHO05D006336 3.4e-14 82.4 108 43.5
Atru.chr9.2085 Acer truncatum HOM05D007277 ORTHO05D006336 7.6e-14 81.3 135 41.5
Cpa.g.sc3.198 Carica papaya HOM05D007277 ORTHO05D006336 1.0e-13 80.9 126 39.7
Thecc.03G111200 Theobroma cacao HOM05D007277 ORTHO05D006336 1.0e-13 80.9 139 43.2
Haze_24862 Corylus avellana HOM05D007277 ORTHO05D006336 1.3e-13 80.5 127 40.9
Ciclev10023402m.g Citrus clementina HOM05D007277 ORTHO05D006336 3.8e-13 79.0 121 37.2
Cfa021203 Carpinus fangiana HOM05D007277 ORTHO05D006336 4.9e-13 78.6 142 38.7
Haze_27687 Corylus avellana HOM05D007277 ORTHO05D006336 6.5e-13 78.2 119 42.9
Haze_27688 Corylus avellana HOM05D007277 ORTHO05D006336 6.5e-13 78.2 119 42.9
Rhsim12G0165400 Rhododendron simsii HOM05D007277 ORTHO05D006336 6.5e-13 78.2 111 42.3
Actinidia10434 Actinidia chinensis HOM05D007277 ORTHO05D006336 8.4e-13 77.8 138 37.7
MD12G1151900 Malus domestica HOM05D007277 ORTHO05D006336 8.4e-13 77.8 96 49.0
Actinidia22592 Actinidia chinensis HOM05D007277 ORTHO05D006336 1.1e-12 77.4 126 38.9
Gohir.D07G062800 Gossypium hirsutum HOM05D007277 ORTHO05D006336 2.5e-12 76.3 153 39.2
FvH4_5g13222 Fragaria vesca HOM05D007277 ORTHO05D006336 3.2e-12 75.9 86 50.0
Cpa.g.sc3.199 Carica papaya HOM05D007277 ORTHO05D006336 4.2e-12 75.5 120 41.7
Cpa.g.sc3.210 Carica papaya HOM05D007277 ORTHO05D006336 4.2e-12 75.5 126 38.9
QL10p051898 Quercus lobata HOM05D007277 ORTHO05D006336 5.5e-12 75.1 141 36.9
QL10p012835 Quercus lobata HOM05D007277 ORTHO05D006336 7.1e-12 74.7 140 38.6
Gohir.A07G058000 Gossypium hirsutum HOM05D007277 ORTHO05D006336 9.3e-12 74.3 140 40.7
QL02p080510 Quercus lobata HOM05D007277 ORTHO05D006336 9.3e-12 74.3 128 38.3
Sed0012100 Sechium edule HOM05D014519 ORTHO05D006336 1.6e-11 73.6 105 41.0
Solyc03g114650.3 Solanum lycopersicum HOM05D007277 ORTHO05D006336 1.6e-11 73.6 117 39.3
QL10p052020 Quercus lobata HOM05D007277 ORTHO05D006336 2.1e-11 73.2 88 44.3
Actinidia24271 Actinidia chinensis HOM05D007277 ORTHO05D006336 2.7e-11 72.8 96 40.6
Cfa002614 Carpinus fangiana HOM05D007277 ORTHO05D006336 2.7e-11 72.8 98 40.8
PGSC0003DMG400024676 Solanum tuberosum HOM05D007277 ORTHO05D006336 2.7e-11 72.8 114 38.6
Haze_24866 Corylus avellana HOM05D007277 ORTHO05D006336 4.6e-11 72.0 119 39.5
Sopen03g033720 Solanum pennellii HOM05D007277 ORTHO05D006336 4.6e-11 72.0 121 38.0
Cfa002615 Carpinus fangiana HOM05D007277 ORTHO05D006336 7.9e-11 71.2 145 39.3
Cpa.g.sc3.209 Carica papaya HOM05D007277 ORTHO05D006336 1.0e-10 70.9 111 41.4
Ciclev10023596m.g Citrus clementina HOM05D010635 ORTHO05D006336 1.0e-10 70.9 147 36.1
PGSC0003DMG400024518 Solanum tuberosum HOM05D007277 ORTHO05D006336 1.3e-10 70.5 122 36.9
TAR371G0786 Trochodendron aralioides HOM05D012741 ORTHO05D006336 1.3e-10 70.5 122 37.7
QL02p080387 Quercus lobata HOM05D007277 ORTHO05D006336 2.3e-10 69.7 136 36.0
Actinidia24268 Actinidia chinensis HOM05D007277 ORTHO05D006336 3.0e-10 69.3 103 35.9
TAR636G1074 Trochodendron aralioides HOM05D012741 ORTHO05D006336 5.1e-10 68.6 160 33.1
TAR636G3203 Trochodendron aralioides HOM05D012741 ORTHO05D006336 5.1e-10 68.6 117 39.3
FAN08G2462 Fragaria x ananassa HOM05D007277 ORTHO05D006336 1.1e-09 67.4 51 62.7
QL10p047937 Quercus lobata HOM05D007277 ORTHO05D006336 1.1e-09 67.4 125 35.2
Gorai.001G066300 Gossypium raimondii HOM05D007277 ORTHO05D006336 1.5e-09 67.0 142 39.4
Haze_24937 Corylus avellana HOM05D007277 ORTHO05D006336 2.5e-09 66.2 107 42.1
Atru.chr12.1464 Acer truncatum HOM05D007277 ORTHO05D006336 3.3e-09 65.9 133 34.6
DCAR_010189 Daucus carota HOM05D007277 ORTHO05D006336 5.7e-09 65.1 109 37.6
Sed0019610 Sechium edule HOM05D014519 ORTHO05D006336 7.4e-09 64.7 104 36.5
TAR371G1039 Trochodendron aralioides HOM05D012741 ORTHO05D006336 1.6e-08 63.5 127 34.6
ClCG04G011470 Citrullus lanatus HOM05D014519 ORTHO05D006336 2.8e-08 62.8 83 39.8
QL10p048018 Quercus lobata HOM05D007277 ORTHO05D337307 4.8e-08 62.0 85 36.5
Cfa002610 Carpinus fangiana HOM05D007277 ORTHO05D006336 8.2e-08 61.2 127 37.0
QL07p042964 Quercus lobata HOM05D007277 ORTHO05D006336 8.2e-08 61.2 67 43.3
Sed0003907 Sechium edule HOM05D014519 ORTHO05D006336 8.2e-08 61.2 112 33.0
CSS0000915 Camellia sinensis var. sinensis HOM05D007277 ORTHO05D006336 1.4e-07 60.5 126 31.7
Cfa002609 Carpinus fangiana HOM05D007277 ORTHO05D006336 1.4e-07 60.5 102 37.3
TAR636G1532 Trochodendron aralioides HOM05D012741 ORTHO05D006336 1.4e-07 60.5 115 36.5
ClCG04G011490 Citrullus lanatus HOM05D014519 ORTHO05D006336 2.4e-07 59.7 107 33.6
ClCG04G011480 Citrullus lanatus HOM05D014519 ORTHO05D006336 4.1e-07 58.9 99 38.4
QL10p048111 Quercus lobata HOM05D010635 ORTHO05D006336 4.1e-07 58.9 112 31.2
TAR636G2604 Trochodendron aralioides HOM05D012741 ORTHO05D006336 1.2e-06 57.4 120 35.8
Manes.05G115300 Manihot esculenta HOM05D007277 ORTHO05D006336 1.5e-06 57.0 127 33.1
TAR636G0488 Trochodendron aralioides HOM05D000568 ORTHO05D000628 2.0e-06 56.6 139 30.2
Dinv36831 Davidia involucrata HOM05D007277 ORTHO05D006336 4.5e-06 55.5 109 36.7
FvH4_5g13141 Fragaria vesca HOM05D007277 ORTHO05D006336 5.9e-06 55.1 45 66.7
Potri.017G019932 Populus trichocarpa HOM05D010635 ORTHO05D006336 7.7e-06 54.7 132 30.3
TAR371G1152 Trochodendron aralioides HOM05D012741 ORTHO05D006336 1.0e-05 54.3 137 31.4


User provided reference genes

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