Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G3221 Fragaria x ananassa HOM05D003880 ORTHO05D004959 0.0e+00 1192.2 607 100.0
FvH4_5g32350 Fragaria vesca HOM05D003880 ORTHO05D004959 0.0e+00 1117.1 607 95.1
FAN13G2674 Fragaria x ananassa HOM05D003880 ORTHO05D004959 0.0e+00 1088.9 608 93.1
FAN08G3431 Fragaria x ananassa HOM05D003880 ORTHO05D004959 0.0e+00 1085.9 608 92.8
FAN04G0842 Fragaria x ananassa HOM05D003880 ORTHO05D004959 0.0e+00 1076.2 608 92.4
RcHm_v2.0_Chr7g0228851 Rosa chinensis HOM05D003880 ORTHO05D004959 2.8e-290 1001.5 614 86.6
Prupe.1G551200 Prunus persica HOM05D003880 ORTHO05D004959 1.1e-243 846.7 612 75.3
MD05G1093300 Malus domestica HOM05D003880 ORTHO05D004959 6.1e-221 771.2 619 69.1
MD10G1100400 Malus domestica HOM05D003880 ORTHO05D004959 9.7e-219 763.8 620 69.0
ClCG08G000380 Citrullus lanatus HOM05D003880 ORTHO05D004959 5.0e-215 751.5 625 66.9
Dinv02585 Davidia involucrata HOM05D003880 ORTHO05D004959 7.4e-211 737.6 637 65.1
CsaV3_5G040400 Cucumis sativus L. HOM05D003880 ORTHO05D004959 9.7e-211 737.3 622 67.0
CiPaw.03G019400 Carya illinoinensis HOM05D003880 ORTHO05D004959 1.2e-208 730.3 565 69.7
Dinv41735 Davidia involucrata HOM05D003880 ORTHO05D004959 7.7e-208 727.6 610 65.7
MELO3C022212.2 Cucumis melo HOM05D003880 ORTHO05D004959 1.7e-207 726.5 626 65.7
TAR628G0517 Trochodendron aralioides HOM05D003880 ORTHO05D004959 6.5e-207 724.5 616 65.4
PGR042G0805 Punica granatum HOM05D003880 ORTHO05D004959 1.6e-205 719.9 623 66.1
QL09p004950 Quercus lobata HOM05D003880 ORTHO05D004959 1.6e-205 719.9 573 68.8
TWI59G0907 Tripterygium wilfordii HOM05D003880 ORTHO05D004959 8.0e-205 717.6 623 65.3
Nn5g27605 Nelumbo nucifera HOM05D003880 ORTHO05D004959 6.7e-204 714.5 636 62.9
Cfa008134 Carpinus fangiana HOM05D003880 ORTHO05D004959 7.5e-203 711.1 601 65.9
TWI14G0176 Tripterygium wilfordii HOM05D003880 ORTHO05D004959 2.2e-202 709.5 623 65.0
Thecc.08G186500 Theobroma cacao HOM05D003880 ORTHO05D004959 5.3e-201 704.9 613 64.8
Gorai.006G130000 Gossypium raimondii HOM05D003880 ORTHO05D004959 5.9e-200 701.4 614 64.8
Peaxi162Scf00391g00533 Petunia axillaris HOM05D003880 ORTHO05D004959 5.9e-200 701.4 567 68.3
Eucgr.F02584 Eucalyptus grandis HOM05D003880 ORTHO05D004959 1.9e-198 696.4 629 64.2
Actinidia23014 Actinidia chinensis HOM05D003880 ORTHO05D004959 3.2e-198 695.7 638 63.0
Duzib177G0936 Durio zibethinus HOM05D003880 ORTHO05D004959 7.2e-198 694.5 533 70.9
PSO017G2071 Papaver somniferum HOM05D003880 ORTHO05D004959 7.2e-198 694.5 626 62.0
PSO063G4997 Papaver somniferum HOM05D003880 ORTHO05D004959 9.4e-198 694.1 619 62.8
Gohir.D09G112200 Gossypium hirsutum HOM05D003880 ORTHO05D004959 1.2e-197 693.7 615 64.1
Nitab4.5_0000167g0290 Nicotiana tabacum HOM05D003880 ORTHO05D004959 1.2e-197 693.7 626 63.9
Solyc11g020780.2 Solanum lycopersicum HOM05D003880 ORTHO05D004959 2.1e-197 693.0 615 64.2
Sopen11g010860 Solanum pennellii HOM05D003880 ORTHO05D004959 2.7e-197 692.6 615 64.6
CANSAT11G2580 Cannabis sativa HOM05D003880 ORTHO05D004959 3.6e-197 692.2 635 63.0
Actinidia02567 Actinidia chinensis HOM05D003880 ORTHO05D004959 1.8e-196 689.9 637 63.0
COL.COLO4_12797 Corchorus olitorius HOM05D003880 ORTHO05D004959 3.0e-196 689.1 564 67.9
PGSC0003DMG400009278 Solanum tuberosum HOM05D003880 ORTHO05D004959 1.2e-195 687.2 621 64.3
CiPaw.04G012900 Carya illinoinensis HOM05D003880 ORTHO05D004959 1.5e-195 686.8 437 78.7
Lj7A289G27 Lonicera japonica HOM05D003880 ORTHO05D004959 2.6e-195 686.0 567 66.5
GSVIVG01012776001 Vitis vinifera HOM05D003880 ORTHO05D004959 4.4e-195 685.3 571 66.0
CAN.G259.4 Capsicum annuum HOM05D003880 ORTHO05D004959 7.5e-195 684.5 619 62.2
MBI17_g21473_MAGBIO Magnolia biondii HOM05D003880 ORTHO05D004959 3.7e-194 682.2 612 63.4
Duzib116G0170 Durio zibethinus HOM05D003880 ORTHO05D004959 8.3e-194 681.0 622 63.5
Aqoxy4G01178 Aquilegia oxysepala HOM05D003880 ORTHO05D004959 2.4e-193 679.5 540 66.5
Cpa.g.sc66.21 Carica papaya HOM05D003880 ORTHO05D004959 3.1e-193 679.1 646 60.5
Lsat_1_v5_gn_4_136101 Lactuca sativa HOM05D003880 ORTHO05D004959 5.4e-193 678.3 591 64.8
Lj4A481T13 Lonicera japonica HOM05D003880 ORTHO05D004959 1.6e-192 676.8 541 67.3
HanXRQChr09g0260531 Helianthus annuus HOM05D003880 ORTHO05D004959 5.9e-192 674.9 615 63.1
Potri.019G081600 Populus trichocarpa HOM05D003880 ORTHO05D004959 1.0e-191 674.1 615 61.3
Manes.02G194600 Manihot esculenta HOM05D003880 ORTHO05D004959 8.6e-191 671.0 633 61.8
Atru.chr13.2392 Acer truncatum HOM05D003880 ORTHO05D004959 7.2e-190 667.9 615 63.1
Hma1.2p1_0004F.1_g004030 Hydrangea macrophylla HOM05D003880 ORTHO05D004959 9.5e-190 667.5 651 59.3
VMungo1080G1836 Vigna mungo HOM05D003880 ORTHO05D004959 9.5e-190 667.5 467 73.4
Sabra19G0093200 Salix brachista HOM05D003880 ORTHO05D004959 1.2e-189 667.2 619 60.9
arahy.Tifrunner.gnm1.ann1.9B0XDD Arachis hypogaea HOM05D003880 ORTHO05D004959 1.4e-188 663.7 465 73.1
arahy.Tifrunner.gnm1.ann1.HC95SM Arachis hypogaea HOM05D003880 ORTHO05D004959 2.3e-188 662.9 465 73.5
Cc00_g06530 Coffea canephora HOM05D003880 ORTHO05D004959 6.8e-188 661.4 573 64.4
SGA_v2.0_scaffold118G32535 Striga asiatica HOM05D003880 ORTHO05D004959 1.5e-187 660.2 622 62.2
Actinidia05639 Actinidia chinensis HOM05D003880 ORTHO05D004959 2.0e-187 659.8 578 65.2
Lsat_1_v5_gn_1_10140 Lactuca sativa HOM05D003880 ORTHO05D004959 2.6e-187 659.4 598 62.7
Sc23g0001360 Simmondsia chinensis HOM05D003880 ORTHO05D004959 2.6e-187 659.4 619 61.1
Phvul.005G000500 Phaseolus vulgaris HOM05D003880 ORTHO05D004959 4.4e-187 658.7 612 62.1
Manes.18G103500 Manihot esculenta HOM05D003880 ORTHO05D004959 7.5e-187 657.9 631 61.0
DCAR_001082 Daucus carota HOM05D003880 ORTHO05D004959 1.3e-186 657.1 618 60.5
SGA_v2.0_scaffold24G10581 Striga asiatica HOM05D003880 ORTHO05D004959 2.2e-186 656.4 606 62.2
Lalb_Chr09g0332911 Lupinus albus HOM05D003880 ORTHO05D004959 1.4e-185 653.7 547 65.8
Migut.C01288 Erythranthe guttata HOM05D003880 ORTHO05D004959 1.8e-185 653.3 632 60.0
Oeu025391.1 Olea europaea HOM05D003880 ORTHO05D004959 4.1e-185 652.1 462 72.1
Potri.013G109400 Populus trichocarpa HOM05D003880 ORTHO05D004959 7.0e-185 651.4 616 60.9
Glyma.06G324700 Glycine max HOM05D003880 ORTHO05D004959 7.8e-184 647.9 618 60.5
Lalb_Chr05g0224761 Lupinus albus HOM05D003880 ORTHO05D004959 7.8e-184 647.9 429 76.9
Migut.N03362 Erythranthe guttata HOM05D003880 ORTHO05D004959 1.0e-183 647.5 611 60.4
Lj3g0009516 Lotus japonicus HOM05D003880 ORTHO05D004959 2.3e-183 646.4 625 61.3
FAN04G1012 Fragaria x ananassa HOM05D003880 ORTHO05D004959 3.9e-183 645.6 374 92.5
Glyma.04G256800 Glycine max HOM05D003880 ORTHO05D004959 3.9e-183 645.6 611 61.2
Psat1g000520 Pisum sativum HOM05D003880 ORTHO05D004959 5.0e-183 645.2 443 74.3
Ciclev10000797m.g Citrus clementina HOM05D003880 ORTHO05D004959 8.6e-183 644.4 611 60.2
Hund16787 Selenicereus undatus HOM05D003880 ORTHO05D004959 2.5e-182 642.9 637 59.3
Rhsim06G0088000 Rhododendron simsii HOM05D003880 ORTHO05D004959 3.3e-182 642.5 641 58.8
Aa31LG7G6540 Aethionema arabicum HOM05D003880 ORTHO05D004959 4.3e-182 642.1 621 59.9
Medtr3g005360 Medicago truncatula HOM05D003880 ORTHO05D004959 5.6e-182 641.7 429 76.5
Sabra13G0094300 Salix brachista HOM05D003880 ORTHO05D004959 9.5e-182 641.0 621 59.6
SalBow7G4466 Salvia bowleyana HOM05D003880 ORTHO05D004959 1.2e-181 640.6 613 60.7
MSTRG.1545 Avicennia marina HOM05D003880 ORTHO05D004959 3.6e-181 639.0 634 59.1
Gohir.A09G115400 Gossypium hirsutum HOM05D003880 ORTHO05D004959 3.6e-181 639.0 614 61.2
Migut.O00683 Erythranthe guttata HOM05D003880 ORTHO05D004959 4.7e-181 638.6 611 59.7
Carub.0001s2216 Capsella rubella HOM05D003880 ORTHO05D004959 1.0e-180 637.5 558 62.7
vmacro12476 Vaccinium macrocarpon HOM05D003880 ORTHO05D004959 4.0e-180 635.6 571 61.8
Aqoxy7G03411 Aquilegia oxysepala HOM05D003880 ORTHO05D004959 5.2e-180 635.2 507 65.9
SalBow6G5395 Salvia bowleyana HOM05D003880 ORTHO05D004959 6.8e-180 634.8 629 58.5
SalBow6G4536 Salvia bowleyana HOM05D003880 ORTHO05D004959 8.9e-180 634.4 630 58.4
Ca_13965_v3 Cicer arietinum L. HOM05D003880 ORTHO05D004959 1.2e-179 634.0 432 75.2
Os01g0874100 Oryza sativa ssp. japonica HOM05D003880 ORTHO05D004959 7.5e-179 631.3 480 70.0
AUR62023520 Chenopodium quinoa HOM05D003880 ORTHO05D004959 9.8e-179 630.9 567 61.9
THA.LOC104800120 Tarenaya hassleriana HOM05D003880 ORTHO05D004959 9.8e-179 630.9 651 57.3
AUR62004625 Chenopodium quinoa HOM05D003880 ORTHO05D004959 2.9e-178 629.4 656 57.5
ECA232G4758 Erigeron canadensis HOM05D003880 ORTHO05D004959 1.1e-177 627.5 620 59.8
Sp5g27110 Schrenkiella parvula HOM05D003880 ORTHO05D004959 1.4e-177 627.1 593 60.9
SGA_v2.0_scaffold149G36569 Striga asiatica HOM05D003880 ORTHO05D004959 1.4e-177 627.1 617 57.7
Zm00001eb348750 Zea mays HOM05D003880 ORTHO05D004959 7.0e-177 624.8 440 72.0
CDE04G1048 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 9.2e-177 624.4 518 64.5
HanXRQChr11g0326071 Helianthus annuus HOM05D003880 ORTHO05D004959 1.2e-176 624.0 631 57.8
Os05g0430200 Oryza sativa ssp. japonica HOM05D003880 ORTHO05D004959 1.2e-176 624.0 426 75.4
CDE04G1100 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 2.7e-176 622.9 520 64.4
unitig_747.g21476 Utricularia gibba HOM05D003880 ORTHO05D004959 4.6e-176 622.1 620 58.2
ATR0661G349 Amborella trichopoda HOM05D003880 ORTHO05D004959 7.8e-176 621.3 625 57.6
TPR.G25498 Trifolium pratense HOM05D003880 ORTHO05D004959 5.0e-175 618.6 427 73.8
vmacro00757 Vaccinium macrocarpon HOM05D003880 ORTHO05D004959 8.6e-175 617.8 621 58.5
BolC6t39667H Brassica oleracea HOM05D003880 ORTHO05D004959 1.5e-174 617.1 538 63.9
BcaB03g14926 Brassica carinata HOM05D003880 ORTHO05D004959 1.9e-174 616.7 540 63.9
BcaC08g46654 Brassica carinata HOM05D003880 ORTHO05D004959 4.3e-174 615.5 538 63.4
Thhalv10018309m.g Eutrema salsugineum HOM05D003880 ORTHO05D004959 7.3e-174 614.8 589 59.9
C06p46140 Brassica napus HOM05D003880 ORTHO05D004959 2.1e-173 613.2 583 60.4
Sed0018926 Sechium edule HOM05D003880 ORTHO05D004959 3.6e-173 612.5 577 62.0
DCAR_011525 Daucus carota HOM05D003880 ORTHO05D004959 1.4e-172 610.5 588 58.0
BraA07t31387Z Brassica rapa HOM05D003880 ORTHO05D004959 4.0e-172 609.0 572 60.5
Aa31LG4G10790 Aethionema arabicum HOM05D003880 ORTHO05D004959 6.8e-172 608.2 602 58.8
Zm00001eb146250 Zea mays HOM05D003880 ORTHO05D004959 8.9e-172 607.8 500 64.0
A07p38210 Brassica napus HOM05D003880 ORTHO05D004959 1.2e-171 607.4 572 60.3
AL2G31670 Arabidopsis lyrata HOM05D003880 ORTHO05D004959 2.0e-171 606.7 633 58.0
CARHR064840 Cardamine hirsuta HOM05D003880 ORTHO05D004959 3.7e-170 602.4 626 57.7
EL10Ac1g00108 Beta vulgaris HOM05D003880 ORTHO05D004959 8.3e-170 601.3 640 56.7
Carub.0002s1882 Capsella rubella HOM05D003880 ORTHO05D004959 4.1e-169 599.0 604 58.4
BcaB05g24701 Brassica carinata HOM05D003880 ORTHO05D004959 9.2e-169 597.8 575 58.6
unitig_0.g2129 Utricularia gibba HOM05D003880 ORTHO05D004959 1.0e-167 594.3 586 58.4
A02p17640 Brassica napus HOM05D003880 ORTHO05D004959 8.6e-167 591.3 607 57.8
BraA02t06810Z Brassica rapa HOM05D003880 ORTHO05D004959 8.6e-167 591.3 607 57.8
AT1G72040 Arabidopsis thaliana HOM05D003880 ORTHO05D004959 4.3e-166 589.0 626 57.0
BcaC03g15327 Brassica carinata HOM05D003880 ORTHO05D004959 9.5e-166 587.8 592 57.1
C02p29320 Brassica napus HOM05D003880 ORTHO05D004959 9.5e-166 587.8 592 57.1
BolC2t08983H Brassica oleracea HOM05D003880 ORTHO05D004959 9.5e-166 587.8 592 57.1
Ah.05g178350 Amaranthus hybridus HOM05D003880 ORTHO05D004959 1.6e-165 587.0 619 56.2
Oeu004740.1 Olea europaea HOM05D003880 ORTHO05D004959 4.4e-163 578.9 511 63.4
Actinidia03514 Actinidia chinensis HOM05D003880 ORTHO05D004959 6.2e-157 558.5 379 75.5
CDE04G1975 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 1.1e-156 557.8 478 62.8
Nitab4.5_0003010g0030 Nicotiana tabacum HOM05D003880 ORTHO05D004959 4.3e-150 535.8 621 54.6
SHI35657 Sapria himalayana HOM05D003880 ORTHO05D004959 4.6e-136 489.2 386 65.0
Pp3c12_15090 Physcomitrium patens HOM05D003880 ORTHO05D004959 6.0e-136 488.8 546 52.4
SEGI_26933 Sequoiadendron giganteum HOM05D003880 ORTHO05D004959 3.0e-135 486.5 367 66.2
Mapoly0028s0143 Marchantia polymorpha HOM05D003880 ORTHO05D004959 6.4e-130 468.8 478 54.8
TAR624G0155 Trochodendron aralioides HOM05D003880 ORTHO05D004959 1.6e-128 464.2 394 64.0
SMO228G0044 Selaginella moellendorffii HOM05D003880 ORTHO05D004959 9.6e-126 454.9 364 63.5
SEGI_09673 Sequoiadendron giganteum HOM05D003880 ORTHO05D004959 2.1e-120 437.2 341 63.6
BraA02t08014Z Brassica rapa HOM05D003880 ORTHO05D004959 4.4e-94 349.7 226 74.8
PRCOL_00007080 Prasinoderma coloniale HOM05D003880 ORTHO05D004959 1.8e-92 344.4 419 47.5
A02p29920 Brassica napus HOM05D003880 ORTHO05D004959 2.7e-88 330.5 214 74.8
BcaNung01810 Brassica carinata HOM05D003880 ORTHO05D004959 1.2e-78 298.5 197 73.6
AagrBONN_evm.TU.Sc2ySwM_344.3442 Anthoceros agrestis HOM05D003880 ORTHO05D004959 1.7e-74 284.6 211 69.7
CSS0041582 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 1.3e-69 268.5 176 74.4
CSS0012164 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 4.9e-69 266.5 173 75.1
CSS0024003 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 4.9e-69 266.5 173 75.1
HPP92_019380 Vanilla planifolia HOM05D003880 ORTHO05D004959 1.9e-65 254.6 455 39.3
MCO01G353 Micromonas commoda HOM05D003880 ORTHO05D004959 5.0e-58 229.9 380 35.8
HPP92_027627 Vanilla planifolia HOM05D003880 ORTHO05D004959 4.9e-53 213.4 216 58.8
Cre02.g095350 Chlamydomonas reinhardtii HOM05D003880 ORTHO05D004959 1.9e-52 211.5 319 37.6
Pp3c15_5240 Physcomitrium patens HOM05D003880 ORTHO05D004959 4.1e-44 183.7 280 38.2
HPP92_019377 Vanilla planifolia HOM05D003880 ORTHO05D004959 2.1e-43 181.4 128 72.7
BolC5t31452H Brassica oleracea HOM05D003880 ORTHO05D004959 1.2e-40 172.2 109 76.1
BolC8t50393H Brassica oleracea HOM05D003880 ORTHO05D004959 4.6e-35 153.7 186 47.3
Pp3c4_20480 Physcomitrium patens HOM05D003880 ORTHO05D004959 5.6e-33 146.7 127 57.5
Actinidia18360 Actinidia chinensis HOM05D003880 ORTHO05D004959 1.5e-30 138.7 88 73.9
C08p27770 Brassica napus HOM05D003880 ORTHO05D004959 6.4e-29 133.3 83 73.5
BcaB05g25101 Brassica carinata HOM05D003880 ORTHO05D019999 1.4e-28 132.1 128 55.5
BcaB08g34411 Brassica carinata HOM05D003880 ORTHO05D004959 2.4e-28 131.3 113 61.1
Mapoly0080s0005 Marchantia polymorpha HOM05D003880 ORTHO05D004959 3.5e-27 127.5 227 34.4
BcaC07g39615 Brassica carinata HOM05D003880 ORTHO05D004959 7.9e-27 126.3 83 68.7
Oeu021226.1 Olea europaea HOM05D003880 ORTHO05D019999 7.9e-27 126.3 99 66.7
HPP92_027628 Vanilla planifolia HOM05D003880 ORTHO05D019999 1.7e-21 108.6 120 51.7
Oeu004742.1 Olea europaea HOM05D003880 ORTHO05D004959 6.7e-18 96.7 238 38.7
BcaB07g33153 Brassica carinata HOM05D003880 ORTHO05D019999 2.4e-15 88.2 97 53.6
BcaB02g09679 Brassica carinata HOM05D003880 ORTHO05D019999 9.3e-12 76.3 89 51.7
Lsat_1_v5_gn_1_10160 Lactuca sativa HOM05D003880 ORTHO05D019999 3.5e-11 74.3 48 70.8
CAN.G308.60 Capsicum annuum HOM05D003880 ORTHO05D000314 1.3e-10 72.4 111 39.6
PRCOL_00005076 Prasinoderma coloniale HOM05D003880 ORTHO05D333288 1.3e-08 65.9 199 29.6
Rhsim01G0139900 Rhododendron simsii HOM05D002321 ORTHO05D006445 6.9e-07 60.1 50 66.0
TAR624G1033 Trochodendron aralioides HOM05D003880 ORTHO05D415972 1.2e-06 59.3 147 35.4
COL.COLO4_03399 Corchorus olitorius HOM05D003880 ORTHO05D019999 3.4e-06 57.8 32 75.0


User provided reference genes

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