Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G3192 Fragaria x ananassa HOM05D003594 ORTHO05D004268 0.0e+00 1620.9 834 100.0
FAN18G4146 Fragaria x ananassa HOM05D003594 ORTHO05D004268 0.0e+00 1610.9 834 99.4
FvH4_5g22640 Fragaria vesca HOM05D003594 ORTHO05D004268 0.0e+00 1597.4 834 99.0
FAN04G1757 Fragaria x ananassa HOM05D003594 ORTHO05D004268 0.0e+00 1488.8 834 93.2
FAN08G1578 Fragaria x ananassa HOM05D003594 ORTHO05D004268 0.0e+00 1430.2 829 90.2
RcHm_v2.0_Chr7g0211051 Rosa chinensis HOM05D003594 ORTHO05D004268 0.0e+00 1335.5 833 83.3
Prupe.3G003400 Prunus persica HOM05D003594 ORTHO05D004268 4.3e-286 988.0 872 62.0
MD17G1284000 Malus domestica HOM05D003594 ORTHO05D004268 1.7e-269 932.9 884 59.8
CiPaw.13G039500 Carya illinoinensis HOM05D003594 ORTHO05D004268 1.0e-242 844.0 822 57.4
Cfa011279 Carpinus fangiana HOM05D003594 ORTHO05D004268 8.9e-239 830.9 805 57.9
Dinv11846 Davidia involucrata HOM05D003594 ORTHO05D004268 7.0e-236 821.2 878 54.3
QL04p046058 Quercus lobata HOM05D003594 ORTHO05D004268 7.3e-233 811.2 876 52.6
TAR622G0410 Trochodendron aralioides HOM05D003594 ORTHO05D004268 2.4e-228 796.2 728 59.2
CANSAT56G3624 Cannabis sativa HOM05D003594 ORTHO05D004268 5.6e-225 785.0 858 52.8
CSS0031708 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 4.4e-222 775.4 854 52.2
CSS0019720 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 7.6e-222 774.6 860 52.3
Manes.11G108901 Manihot esculenta HOM05D003594 ORTHO05D004268 1.6e-216 756.9 790 52.8
Nn4g23115 Nelumbo nucifera HOM05D003594 ORTHO05D004268 3.6e-216 755.7 901 49.9
Lj3C928G2 Lonicera japonica HOM05D003594 ORTHO05D004268 2.6e-214 749.6 848 50.4
Actinidia06697 Actinidia chinensis HOM05D003594 ORTHO05D004268 1.6e-211 740.3 878 50.6
PSO478G3548 Papaver somniferum HOM05D003594 ORTHO05D004268 1.1e-207 727.6 760 53.2
TWI38G1480 Tripterygium wilfordii HOM05D003594 ORTHO05D004268 1.8e-207 726.9 820 50.6
Potri.010G238000 Populus trichocarpa HOM05D003594 ORTHO05D004268 2.4e-207 726.5 876 48.9
PSO017G2985 Papaver somniferum HOM05D003594 ORTHO05D004268 2.2e-205 719.9 758 53.4
Sabra10G0186200 Salix brachista HOM05D003594 ORTHO05D004268 1.1e-204 717.6 871 48.6
Glyma.07G058700 Glycine max HOM05D003594 ORTHO05D004268 1.6e-203 713.8 802 50.7
Glyma.16G027600 Glycine max HOM05D003594 ORTHO05D004268 6.0e-203 711.8 809 51.3
Gohir.A06G169100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 6.0e-203 711.8 849 48.1
Rhsim03G0098900 Rhododendron simsii HOM05D003594 ORTHO05D004268 1.7e-202 710.3 890 47.6
Thecc.10G111800 Theobroma cacao HOM05D003594 ORTHO05D004268 2.5e-201 706.4 885 48.5
Ciclev10027803m.g Citrus clementina HOM05D003594 ORTHO05D004268 1.8e-199 700.3 860 48.0
Lalb_Chr10g0100231 Lupinus albus HOM05D003594 ORTHO05D004268 6.9e-199 698.4 863 48.3
Duzib052G0830 Durio zibethinus HOM05D003594 ORTHO05D004268 1.2e-198 697.6 719 53.5
Gorai.010G208000 Gossypium raimondii HOM05D003594 ORTHO05D004268 2.9e-197 693.0 859 47.4
Cc02_g29780 Coffea canephora HOM05D003594 ORTHO05D004268 6.4e-197 691.8 880 47.0
Gohir.D06G176700 Gossypium hirsutum HOM05D003594 ORTHO05D004268 1.1e-196 691.0 708 52.5
VMungo0331G0994 Vigna mungo HOM05D003594 ORTHO05D004268 1.0e-194 684.5 779 50.1
Lsat_1_v5_gn_2_104580 Lactuca sativa HOM05D003594 ORTHO05D004268 2.5e-193 679.9 835 47.2
ClCG09G007450 Citrullus lanatus HOM05D003594 ORTHO05D004268 9.6e-193 677.9 841 48.2
COL.COLO4_28858 Corchorus olitorius HOM05D003594 ORTHO05D004268 2.4e-191 673.3 883 47.2
GSVIVG01032568001 Vitis vinifera HOM05D003594 ORTHO05D004268 2.4e-191 673.3 748 52.3
Solyc11g007010.2 Solanum lycopersicum HOM05D003594 ORTHO05D004268 4.0e-191 672.5 859 45.4
Sopen11g002930 Solanum pennellii HOM05D003594 ORTHO05D004268 6.9e-191 671.8 859 45.6
Ca_23589_v3 Cicer arietinum L. HOM05D003594 ORTHO05D004268 2.2e-189 666.8 884 45.1
DCAR_006339 Daucus carota HOM05D003594 ORTHO05D004268 1.9e-188 663.7 871 45.5
Medtr3g075460 Medicago truncatula HOM05D003594 ORTHO05D004268 2.5e-188 663.3 878 45.9
Aqoxy3G00687_Aqoxy3G00688 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 3.2e-188 662.9 743 51.7
Peaxi162Scf00173g00417 Petunia axillaris HOM05D003594 ORTHO05D004268 4.2e-188 662.5 727 48.6
ECA238G3867 Erigeron canadensis HOM05D003594 ORTHO05D004268 9.3e-188 661.4 852 45.9
Lj3g0004598 Lotus japonicus HOM05D003594 ORTHO05D004268 6.0e-187 658.7 872 45.6
Sed0011677 Sechium edule HOM05D003594 ORTHO05D004268 3.3e-185 652.9 830 47.2
THA.LOC104820658 Tarenaya hassleriana HOM05D003594 ORTHO05D004268 4.8e-184 649.0 838 46.1
Phvul.010G110700 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 6.2e-184 648.7 904 45.2
Nitab4.5_0005622g0060 Nicotiana tabacum HOM05D003594 ORTHO05D004268 3.1e-183 646.4 895 43.2
Sed0007749 Sechium edule HOM05D003594 ORTHO05D004268 3.1e-183 646.4 834 46.4
PGSC0003DMG400023977 Solanum tuberosum HOM05D003594 ORTHO05D004268 6.9e-183 645.2 787 46.1
Medtr8g028030 Medicago truncatula HOM05D003594 ORTHO05D004268 2.0e-182 643.7 882 44.3
Nitab4.5_0001437g0090 Nicotiana tabacum HOM05D003594 ORTHO05D004268 1.7e-181 640.6 891 43.7
Carub.0001s2847 Capsella rubella HOM05D003594 ORTHO05D004268 2.5e-180 636.7 850 45.4
ClCG05G018390 Citrullus lanatus HOM05D003594 ORTHO05D004268 5.5e-180 635.6 892 45.1
Sc06g0002330 Simmondsia chinensis HOM05D003594 ORTHO05D004268 3.5e-179 632.9 853 43.5
Migut.F00912 Erythranthe guttata HOM05D003594 ORTHO05D004268 3.0e-178 629.8 844 44.4
Ah.04g162260 Amaranthus hybridus HOM05D003594 ORTHO05D004268 3.9e-178 629.4 877 43.0
Cc02_g09740 Coffea canephora HOM05D003594 ORTHO05D004268 5.7e-177 625.5 651 53.8
Psat4g159240 Pisum sativum HOM05D003594 ORTHO05D004268 1.3e-176 624.4 676 51.3
arahy.Tifrunner.gnm1.ann1.8EA83L Arachis hypogaea HOM05D003594 ORTHO05D004268 2.2e-176 623.6 899 43.6
Lj1g0028024 Lotus japonicus HOM05D003594 ORTHO05D004268 1.1e-175 621.3 850 46.5
Thhalv10006813m.g Eutrema salsugineum HOM05D003594 ORTHO05D004268 2.4e-175 620.2 831 44.9
ATR0737G134 Amborella trichopoda HOM05D003594 ORTHO05D004268 4.1e-175 619.4 766 47.0
Eucgr.J00989 Eucalyptus grandis HOM05D003594 ORTHO05D004268 6.9e-175 618.6 805 47.1
HanXRQChr11g0342181 Helianthus annuus HOM05D003594 ORTHO05D004268 1.5e-174 617.5 836 43.8
MBI02_g14487_MAGBIO Magnolia biondii HOM05D003594 ORTHO05D004268 5.9e-174 615.5 894 45.0
Oeu025587.1 Olea europaea HOM05D003594 ORTHO05D004268 5.5e-172 609.0 932 42.1
TPR.G8757 Trifolium pratense HOM05D003594 ORTHO05D004268 1.3e-168 597.8 618 52.9
CARHR029630 Cardamine hirsuta HOM05D003594 ORTHO05D004268 1.8e-167 594.0 725 46.9
A09p36300 Brassica napus HOM05D003594 ORTHO05D004268 6.9e-167 592.0 855 42.1
MELO3C012354.2 Cucumis melo HOM05D003594 ORTHO05D004268 1.2e-166 591.3 775 46.2
BraA09t39154Z Brassica rapa HOM05D003594 ORTHO05D004268 3.4e-166 589.7 854 41.8
AT1G30240 Arabidopsis thaliana HOM05D003594 ORTHO05D004268 1.0e-165 588.2 852 43.3
BcaC05g27050 Brassica carinata HOM05D003594 ORTHO05D004268 1.3e-165 587.8 855 41.8
BolC5t31639H Brassica oleracea HOM05D003594 ORTHO05D004268 1.3e-165 587.8 855 41.8
C05p29080 Brassica napus HOM05D003594 ORTHO05D004268 1.7e-165 587.4 855 41.8
AL1G44160 Arabidopsis lyrata HOM05D003594 ORTHO05D004268 8.5e-165 585.1 776 46.0
Nn3g17199 Nelumbo nucifera HOM05D003594 ORTHO05D004268 1.9e-164 583.9 536 58.6
Aa31sc91G80 Aethionema arabicum HOM05D003594 ORTHO05D004268 3.2e-164 583.2 845 43.1
BolC3t19907H Brassica oleracea HOM05D003594 ORTHO05D004268 3.2e-164 583.2 646 49.2
BcaC01g00173 Brassica carinata HOM05D003594 ORTHO05D004268 7.2e-164 582.0 646 49.2
Sp1g26080 Schrenkiella parvula HOM05D003594 ORTHO05D004268 7.2e-164 582.0 852 42.3
BcaB03g12203 Brassica carinata HOM05D003594 ORTHO05D004268 9.4e-164 581.6 646 49.4
C03p76500 Brassica napus HOM05D003594 ORTHO05D004268 1.2e-163 581.3 646 49.1
PGR044G2128 Punica granatum HOM05D003594 ORTHO05D004268 2.7e-163 580.1 651 49.5
HPP92_013069 Vanilla planifolia HOM05D003594 ORTHO05D004268 6.1e-163 578.9 767 43.8
MD09G1289100 Malus domestica HOM05D003594 ORTHO05D004268 1.1e-161 574.7 546 59.7
BcaB07g32622 Brassica carinata HOM05D003594 ORTHO05D004268 2.0e-161 573.9 836 42.2
SalBow6G4638 Salvia bowleyana HOM05D003594 ORTHO05D004268 5.7e-161 572.4 726 44.6
Cpa.g.sc183.16 Carica papaya HOM05D003594 ORTHO05D004268 1.7e-160 570.9 715 49.1
Dinv06533 Davidia involucrata HOM05D003594 ORTHO05D004268 5.3e-159 565.8 806 44.2
arahy.Tifrunner.gnm1.ann1.Q3AX4Y Arachis hypogaea HOM05D003594 ORTHO05D004268 4.5e-158 562.8 952 39.6
A08p24610 Brassica napus HOM05D003594 ORTHO05D004268 4.5e-158 562.8 839 41.2
CDE09G0981 Ceratophyllum demersum HOM05D003594 ORTHO05D004268 3.0e-154 550.1 891 42.6
EL10Ac4g08659 Beta vulgaris HOM05D003594 ORTHO05D004268 6.7e-154 548.9 864 41.0
AUR62042073 Chenopodium quinoa HOM05D003594 ORTHO05D004268 3.8e-149 533.1 739 43.3
BraA08t34416Z Brassica rapa HOM05D003594 ORTHO05D004268 3.4e-145 520.0 605 47.9
SGA_v2.0_scaffold295G47526 Striga asiatica HOM05D003594 ORTHO05D004268 2.2e-144 517.3 833 38.7
CAN.G645.3 Capsicum annuum HOM05D003594 ORTHO05D004268 3.8e-141 506.5 689 45.4
Os05g0295900 Oryza sativa ssp. japonica HOM05D003594 ORTHO05D004268 5.5e-140 502.7 776 41.8
AUR62043305 Chenopodium quinoa HOM05D003594 ORTHO05D004268 5.9e-134 482.6 725 41.2
CsaV3_5G035440 Cucumis sativus L. HOM05D003594 ORTHO05D004268 1.6e-131 474.6 597 47.1
CsaV3_5G035480 Cucumis sativus L. HOM05D003594 ORTHO05D004268 1.6e-131 474.6 597 47.1
Gohir.D09G017550 Gossypium hirsutum HOM05D003594 ORTHO05D004268 1.8e-127 461.1 670 41.8
Gorai.006G020600 Gossypium raimondii HOM05D003594 ORTHO05D004268 3.5e-126 456.8 669 41.7
Mapoly0108s0040 Marchantia polymorpha HOM05D003594 ORTHO05D004268 4.9e-120 436.4 666 39.9
CsaV3_5G035460 Cucumis sativus L. HOM05D003594 ORTHO05D004268 9.5e-116 422.2 444 52.5
Atru.chr12.1013 Acer truncatum HOM05D003594 ORTHO05D004268 1.6e-115 421.4 616 42.9
MD09G1292100 Malus domestica HOM05D003594 ORTHO05D004268 4.0e-114 416.8 507 51.7
Pp3c8_9490 Physcomitrium patens HOM05D003594 ORTHO05D004268 6.8e-114 416.0 685 38.8
Cc02_g29810 Coffea canephora HOM05D003594 ORTHO05D004268 9.8e-113 412.1 711 39.1
Cc02_g09730 Coffea canephora HOM05D003594 ORTHO05D004268 2.2e-112 411.0 354 59.9
Phvul.003G001400 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 1.7e-109 401.4 558 47.7
Zm00001eb231330 Zea mays HOM05D003594 ORTHO05D004268 3.2e-103 380.6 672 39.1
Actinidia18596 Actinidia chinensis HOM05D003594 ORTHO05D004268 2.1e-99 367.9 453 47.7
SMO364G0406 Selaginella moellendorffii HOM05D003594 ORTHO05D004268 1.1e-98 365.5 708 35.5
Pp3c15_8100 Physcomitrium patens HOM05D003594 ORTHO05D004268 2.9e-96 357.5 687 35.5
Pp3c15_8103 Physcomitrium patens HOM05D003594 ORTHO05D004268 2.9e-96 357.5 687 35.5
Hund22286 Selenicereus undatus HOM05D003594 ORTHO05D004268 2.3e-93 347.8 639 38.8
Hund23993 Selenicereus undatus HOM05D003594 ORTHO05D004268 5.6e-92 343.2 639 38.8
Hma1.2p1_0145F.1_g065330 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 1.3e-88 332.0 338 55.9
Haze_02500 Corylus avellana HOM05D003594 ORTHO05D004268 7.1e-87 326.2 248 64.5
TWI63G1716 Tripterygium wilfordii HOM05D003594 ORTHO05D004268 9.6e-84 315.8 272 55.9
CBR_g29875 Chara braunii HOM05D003594 ORTHO05D000497 4.0e-82 310.5 797 33.1
CBR_g45421 Chara braunii HOM05D003594 ORTHO05D004268 1.5e-76 292.0 824 31.8
CsaV3_5G035510 Cucumis sativus L. HOM05D003594 ORTHO05D004268 1.3e-67 262.3 224 59.4
Aqoxy2G02949 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 6.1e-62 243.4 803 30.3
GSVIVG01011385001 Vitis vinifera HOM05D003594 ORTHO05D004268 2.3e-61 241.5 467 38.5
Gohir.A09G018100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 4.3e-60 237.3 448 36.4
Os06g0343900 Oryza sativa ssp. japonica HOM05D003594 ORTHO05D004268 7.4e-60 236.5 333 40.8
Haze_02506 Corylus avellana HOM05D003594 ORTHO05D004268 5.1e-53 213.8 258 50.0
Atru.chr12.1014 Acer truncatum HOM05D003594 ORTHO05D004268 5.0e-48 197.2 142 66.9
SEGI_27789 Sequoiadendron giganteum HOM05D003594 ORTHO05D004268 4.7e-46 190.7 195 53.8
MSTRG.27538 Avicennia marina HOM05D003594 ORTHO05D004268 1.3e-43 182.6 141 58.9
CsaV3_5G035420 Cucumis sativus L. HOM05D003594 ORTHO05D004268 3.1e-42 177.9 155 58.1
Psat6g218640 Pisum sativum HOM05D001312 ORTHO05D001832 1.1e-39 169.5 341 37.5
QL04p046254 Quercus lobata HOM05D003594 ORTHO05D004268 7.2e-39 166.8 232 44.0
MSTRG.27536 Avicennia marina HOM05D003594 ORTHO05D004268 8.0e-38 163.3 271 38.7
Gohir.A09G018150 Gossypium hirsutum HOM05D003594 ORTHO05D004268 1.0e-37 162.9 194 47.4
MD09G1289200 Malus domestica HOM05D003594 ORTHO05D004268 2.3e-37 161.8 121 63.6
AagrBONN_evm.TU.Sc2ySwM_228.2673 Anthoceros agrestis HOM05D003594 ORTHO05D004268 2.0e-36 158.7 343 35.3
ATR0564G271 Amborella trichopoda HOM05D003594 ORTHO05D004268 7.5e-36 156.8 426 31.9
SHI24306 Sapria himalayana HOM05D003594 ORTHO05D004268 7.5e-36 156.8 237 41.4
Nn3g17196 Nelumbo nucifera HOM05D003594 ORTHO05D004268 1.1e-34 152.9 274 39.1
MSTRG.11586 Avicennia marina HOM05D003594 ORTHO05D004268 4.1e-34 151.0 119 57.1
Cc02_g29830 Coffea canephora HOM05D003594 ORTHO05D004268 4.1e-34 151.0 139 57.6
Hund22291 Selenicereus undatus HOM05D003594 ORTHO05D004268 5.9e-33 147.1 255 40.0
Hma1.2p1_2419F.1_g321820 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 7.7e-33 146.7 116 59.5
SEGI_05252 Sequoiadendron giganteum HOM05D003594 ORTHO05D004268 2.9e-32 144.8 252 40.1
BcaB08g34816 Brassica carinata HOM05D002573 ORTHO05D002918 3.4e-28 131.3 146 46.6
A02p30260 Brassica napus HOM05D003594 ORTHO05D004268 3.4e-28 131.3 101 58.4
A03p57890 Brassica napus HOM05D003594 ORTHO05D004268 3.4e-28 131.3 101 58.4
Prupe.6G159300 Prunus persica HOM05D003594 ORTHO05D004268 2.2e-27 128.6 185 42.2
SHI24302 Sapria himalayana HOM05D003594 ORTHO05D004268 1.2e-25 122.9 134 49.3
C02p37120 Brassica napus HOM05D003594 ORTHO05D004268 2.7e-25 121.7 113 51.3
CsaV3_5G035520 Cucumis sativus L. HOM05D003594 ORTHO05D004268 1.0e-24 119.8 181 42.0
AagrBONN_evm.TU.Sc2ySwM_228.2672 Anthoceros agrestis HOM05D003594 ORTHO05D004268 1.4e-21 109.4 125 47.2
Actinidia36695 Actinidia chinensis HOM05D003594 ORTHO05D004268 5.7e-20 104.0 284 35.6
BolC5t29265H Brassica oleracea HOM05D003594 ORTHO05D004268 7.5e-20 103.6 80 56.2
C03p91380 Brassica napus HOM05D003594 ORTHO05D004268 1.1e-18 99.8 80 55.0
BolC3t21454H Brassica oleracea HOM05D003594 ORTHO05D004268 1.1e-18 99.8 80 55.0
C03p15410 Brassica napus HOM05D003594 ORTHO05D004268 1.8e-18 99.0 87 50.6
BolC7t45516H Brassica oleracea HOM05D003594 ORTHO05D004268 7.0e-18 97.1 80 53.8
Haze_25332 Corylus avellana HOM05D003594 ORTHO05D004268 3.8e-16 91.3 89 51.7
SHI24307 Sapria himalayana HOM05D003594 ORTHO05D004268 6.6e-16 90.5 175 40.6
Haze_02499 Corylus avellana HOM05D003594 ORTHO05D004268 8.6e-16 90.1 89 50.6
BraA03t14853Z Brassica rapa HOM05D003594 ORTHO05D004268 5.6e-15 87.4 70 55.7
Hma1.2p1_0053F.1_g030920 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 5.6e-15 87.4 75 61.3
C03p54150 Brassica napus HOM05D003594 ORTHO05D004268 1.2e-14 86.3 70 54.3
Actinidia36694 Actinidia chinensis HOM05D003594 ORTHO05D004268 6.8e-13 80.5 60 63.3
CAN.G645.4 Capsicum annuum HOM05D003594 ORTHO05D004268 1.3e-11 76.3 88 45.5
Psat6g091000 Pisum sativum HOM05D003335 ORTHO05D003853 7.0e-10 70.5 78 48.7
SHI24305 Sapria himalayana HOM05D000023 ORTHO05D000014 9.2e-10 70.1 56 60.7
CDE02G4417 Ceratophyllum demersum HOM05D003594 ORTHO05D004268 1.6e-09 69.3 265 29.8
Psat6g226760 Pisum sativum HOM05D003335 ORTHO05D003853 1.6e-09 69.3 64 51.6
TPR.G23930 Trifolium pratense HOM05D003594 ORTHO05D004268 3.9e-08 64.7 259 27.8
Glyma.14G085550 Glycine max HOM05D003594 ORTHO05D004268 5.0e-08 64.3 55 50.9
Ciclev10030203m.g Citrus clementina HOM05D003594 ORTHO05D026973 1.1e-07 63.2 115 42.6
MSTRG.26055 Avicennia marina HOM05D003594 ORTHO05D004268 4.7e-06 57.8 98 32.7
Haze_02504 Corylus avellana HOM05D003594 ORTHO05D026973 4.7e-06 57.8 97 48.5
TPR.G23814 Trifolium pratense HOM05D003594 ORTHO05D411989 4.7e-06 57.8 66 40.9


User provided reference genes

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