Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G3094 Fragaria x ananassa HOM05D005829 ORTHO05D007246 1.4e-102 376.3 192 100.0
FAN08G3097 Fragaria x ananassa HOM05D005829 ORTHO05D007246 4.1e-99 364.8 192 96.9
FAN13G0492 Fragaria x ananassa HOM05D005829 ORTHO05D007246 6.0e-98 360.9 192 95.8
FAN04G2288 Fragaria x ananassa HOM05D005829 ORTHO05D007246 2.3e-97 359.0 192 95.3
FvH4_5g12290 Fragaria vesca HOM05D005829 ORTHO05D007246 1.2e-95 353.2 192 94.8
FAN18G2130 Fragaria x ananassa HOM05D005829 ORTHO05D007246 1.2e-95 353.2 192 94.8
RcHm_v2.0_Chr7g0185261 Rosa chinensis HOM05D005829 ORTHO05D007246 1.1e-86 323.6 196 87.8
MD06G1215200 Malus domestica HOM05D005829 ORTHO05D007246 1.4e-70 270.0 201 73.6
Prupe.5G220500 Prunus persica HOM05D005829 ORTHO05D007246 6.9e-70 267.7 200 74.5
MD14G1226000 Malus domestica HOM05D005829 ORTHO05D007246 4.5e-69 265.0 202 72.3
Haze_18659 Corylus avellana HOM05D005829 ORTHO05D007246 1.5e-56 223.4 204 62.3
Cfa019789 Carpinus fangiana HOM05D005829 ORTHO05D007246 7.4e-56 221.1 205 61.5
QL10p025073 Quercus lobata HOM05D005829 ORTHO05D007246 1.7e-55 219.9 216 57.4
CANSAT21G0600 Cannabis sativa HOM05D005829 ORTHO05D007246 8.2e-55 217.6 207 58.0
CiPaw.15G129500 Carya illinoinensis HOM05D005829 ORTHO05D007246 1.0e-52 210.7 204 60.8
Manes.01G012500 Manihot esculenta HOM05D005829 ORTHO05D007246 3.2e-51 205.7 213 56.8
Sabra15G0075500 Salix brachista HOM05D005829 ORTHO05D007246 5.5e-51 204.9 210 57.1
GSVIVG01008273001 Vitis vinifera HOM05D005829 ORTHO05D007246 9.4e-51 204.1 212 56.1
PGR083G1885 Punica granatum HOM05D005829 ORTHO05D007246 3.6e-50 202.2 208 56.7
Lalb_Chr14g0371231 Lupinus albus HOM05D005829 ORTHO05D007246 7.9e-50 201.1 182 60.4
arahy.Tifrunner.gnm1.ann1.K96EGP Arachis hypogaea HOM05D005829 ORTHO05D007246 1.8e-49 199.9 202 57.9
Potri.015G053800 Populus trichocarpa HOM05D005829 ORTHO05D007246 1.8e-49 199.9 210 54.8
TWI15G0782 Tripterygium wilfordii HOM05D005829 ORTHO05D007246 5.1e-49 198.4 197 58.9
Dinv36156 Davidia involucrata HOM05D005829 ORTHO05D007246 6.7e-49 198.0 208 54.8
Manes.05G145805 Manihot esculenta HOM05D005829 ORTHO05D007246 2.2e-47 193.0 203 54.2
Eucgr.K02215 Eucalyptus grandis HOM05D005829 ORTHO05D007246 2.8e-47 192.6 175 58.9
Cpa.g.sc13.3 Carica papaya HOM05D005829 ORTHO05D007246 4.8e-47 191.8 205 58.0
ClCG06G014890 Citrullus lanatus HOM05D005829 ORTHO05D007246 4.1e-46 188.7 203 53.7
Duzib068G0473 Durio zibethinus HOM05D005829 ORTHO05D007246 5.3e-46 188.3 214 57.0
HanXRQChr10g0314971 Helianthus annuus HOM05D005829 ORTHO05D007246 1.2e-45 187.2 179 58.1
Cc04_g07210 Coffea canephora HOM05D005829 ORTHO05D007246 7.7e-45 184.5 186 57.0
Duzib084G1006 Durio zibethinus HOM05D005829 ORTHO05D007246 7.7e-45 184.5 216 50.9
arahy.Tifrunner.gnm1.ann1.SID7TX Arachis hypogaea HOM05D005829 ORTHO05D007246 1.3e-44 183.7 232 50.0
Aqoxy3G00323 Aquilegia oxysepala HOM05D005829 ORTHO05D007246 2.2e-44 183.0 199 53.3
Ciclev10022208m.g Citrus clementina HOM05D005829 ORTHO05D007246 2.9e-44 182.6 220 52.7
Lsat_1_v5_gn_8_146520 Lactuca sativa HOM05D005829 ORTHO05D007246 1.1e-43 180.6 178 55.6
MELO3C017300.2 Cucumis melo HOM05D005829 ORTHO05D007246 1.9e-43 179.9 205 56.6
Hund02393 Selenicereus undatus HOM05D005829 ORTHO05D007246 2.5e-43 179.5 199 53.3
TAR629G3023 Trochodendron aralioides HOM05D005829 ORTHO05D007246 2.5e-43 179.5 158 61.4
Thecc.03G033800 Theobroma cacao HOM05D005829 ORTHO05D007246 7.2e-43 177.9 214 52.8
CsaV3_1G003750 Cucumis sativus L. HOM05D005829 ORTHO05D007246 1.6e-42 176.8 202 55.0
Gohir.D09G173000 Gossypium hirsutum HOM05D005829 ORTHO05D007246 2.1e-42 176.4 214 53.7
CSS0021100 Camellia sinensis var. sinensis HOM05D005829 ORTHO05D007246 3.6e-42 175.6 219 51.1
Gorai.006G194900 Gossypium raimondii HOM05D005829 ORTHO05D007246 6.1e-42 174.9 214 53.3
Sc12g0006790 Simmondsia chinensis HOM05D005829 ORTHO05D007246 1.0e-41 174.1 200 49.0
Atru.chr9.821 Acer truncatum HOM05D005829 ORTHO05D007246 1.8e-41 173.3 214 50.5
Gohir.A09G177500 Gossypium hirsutum HOM05D005829 ORTHO05D007246 1.8e-41 173.3 210 51.9
FAN14G0369 Fragaria x ananassa HOM05D005829 ORTHO05D007246 3.9e-41 172.2 84 97.6
Oeu046995.1 Olea europaea HOM05D005829 ORTHO05D007246 6.7e-41 171.4 196 50.5
Nitab4.5_0010801g0020 Nicotiana tabacum HOM05D005829 ORTHO05D007246 2.0e-40 169.9 196 53.6
PSO478G3740 Papaver somniferum HOM05D005829 ORTHO05D007246 3.3e-40 169.1 193 48.2
PSO017G1947 Papaver somniferum HOM05D005829 ORTHO05D007246 5.7e-40 168.3 193 48.7
ECA234G2972 Erigeron canadensis HOM05D005829 ORTHO05D007246 7.4e-40 167.9 188 53.7
Nitab4.5_0011561g0030 Nicotiana tabacum HOM05D005829 ORTHO05D007246 9.7e-40 167.5 196 53.1
CAN.G423.7 Capsicum annuum HOM05D005829 ORTHO05D007246 1.7e-39 166.8 175 55.4
MSTRG.11323 Avicennia marina HOM05D005829 ORTHO05D007246 3.7e-39 165.6 193 50.3
ATR0665G268 Amborella trichopoda HOM05D005829 ORTHO05D007246 6.3e-39 164.9 156 57.7
PGSC0003DMG400004051 Solanum tuberosum HOM05D005829 ORTHO05D007246 8.2e-39 164.5 191 49.2
Potri.015G054100 Populus trichocarpa HOM05D005829 ORTHO05D007246 1.1e-38 164.1 149 59.1
Sopen06g026440 Solanum pennellii HOM05D005829 ORTHO05D007246 2.4e-38 162.9 190 50.5
EL10Ac5g11432 Beta vulgaris HOM05D005829 ORTHO05D007246 3.1e-38 162.5 209 51.2
Oeu006380.1 Olea europaea HOM05D005829 ORTHO05D007246 3.1e-38 162.5 196 51.0
Migut.I00369 Erythranthe guttata HOM05D005829 ORTHO05D007246 4.1e-38 162.2 138 60.1
Solyc06g069170.4 Solanum lycopersicum HOM05D005829 ORTHO05D007246 4.1e-38 162.2 190 50.0
Actinidia06971 Actinidia chinensis HOM05D005829 ORTHO05D007246 1.7e-36 156.8 205 47.8
CARHR067000 Cardamine hirsuta HOM05D005829 ORTHO05D007246 1.5e-35 153.7 218 50.5
Rhsim13G0208500 Rhododendron simsii HOM05D005829 ORTHO05D007246 1.5e-35 153.7 234 44.9
Ah.11g045030 Amaranthus hybridus HOM05D005829 ORTHO05D007246 1.9e-35 153.3 207 45.9
DCAR_023199 Daucus carota HOM05D005829 ORTHO05D007246 1.9e-35 153.3 152 57.2
Sed0000228 Sechium edule HOM05D005829 ORTHO05D007246 1.9e-35 153.3 168 51.2
unitig_749.g13417 Utricularia gibba HOM05D005829 ORTHO05D007246 2.5e-35 152.9 120 60.8
THA.LOC104813901 Tarenaya hassleriana HOM05D005829 ORTHO05D007246 3.2e-35 152.5 211 47.9
BcaB03g15734 Brassica carinata HOM05D005829 ORTHO05D007246 5.5e-35 151.8 215 48.8
CDE11G0392 Ceratophyllum demersum HOM05D005829 ORTHO05D007246 7.2e-35 151.4 154 53.2
Peaxi162Scf00013g00945 Petunia axillaris HOM05D005829 ORTHO05D007246 7.2e-35 151.4 198 49.5
Lj2g0004175 Lotus japonicus HOM05D005829 ORTHO05D007246 9.4e-35 151.0 197 51.8
Carub.0002s2066 Capsella rubella HOM05D005829 ORTHO05D007246 4.7e-34 148.7 221 47.5
AL2G33720 Arabidopsis lyrata HOM05D005829 ORTHO05D007246 8.0e-34 147.9 218 49.1
Nn1g06955 Nelumbo nucifera HOM05D005829 ORTHO05D007246 3.0e-33 146.0 178 48.9
CDE05G0659 Ceratophyllum demersum HOM05D005829 ORTHO05D007246 4.0e-33 145.6 154 50.6
vmacro04041 Vaccinium macrocarpon HOM05D005829 ORTHO05D007246 1.2e-32 144.1 252 41.7
Sp5g29090 Schrenkiella parvula HOM05D005829 ORTHO05D007246 3.3e-32 142.5 218 49.1
Aa31LG4G4200 Aethionema arabicum HOM05D005829 ORTHO05D007246 5.7e-32 141.7 217 46.1
BcaC08g45615 Brassica carinata HOM05D005829 ORTHO05D007246 7.5e-32 141.4 216 45.8
Ca_25501_v3 Cicer arietinum L. HOM05D005829 ORTHO05D007246 9.7e-32 141.0 195 47.7
A02p18930 Brassica napus HOM05D005829 ORTHO05D007246 3.7e-31 139.0 216 44.0
BraA02t06935Z Brassica rapa HOM05D005829 ORTHO05D007246 4.8e-31 138.7 216 44.9
BcaC03g15467 Brassica carinata HOM05D005829 ORTHO05D007246 8.2e-31 137.9 216 44.9
C02p31470 Brassica napus HOM05D005829 ORTHO05D007246 8.2e-31 137.9 216 44.9
BolC2t09178H Brassica oleracea HOM05D005829 ORTHO05D007246 8.2e-31 137.9 216 44.9
HPP92_013263 Vanilla planifolia HOM05D005829 ORTHO05D007246 1.4e-30 137.1 171 49.1
C06p33760 Brassica napus HOM05D005829 ORTHO05D007246 2.4e-30 136.3 216 45.4
Os03g0710600 Oryza sativa ssp. japonica HOM05D005829 ORTHO05D007246 2.4e-30 136.3 204 44.6
SGA_v2.0_scaffold25G10988 Striga asiatica HOM05D005829 ORTHO05D007246 2.4e-30 136.3 216 41.7
HPP92_013214 Vanilla planifolia HOM05D005829 ORTHO05D007246 7.0e-30 134.8 175 48.6
BcaB05g24816 Brassica carinata HOM05D005829 ORTHO05D007246 1.2e-29 134.0 219 43.8
BcaB05g24818 Brassica carinata HOM05D005829 ORTHO05D007246 1.2e-29 134.0 219 43.8
Thhalv10019131m.g Eutrema salsugineum HOM05D005829 ORTHO05D007246 1.6e-29 133.7 218 42.2
BolC6t38490H Brassica oleracea HOM05D005829 ORTHO05D007246 2.7e-29 132.9 216 44.9
BcaC09g48855 Brassica carinata HOM05D005829 ORTHO05D007246 4.5e-29 132.1 114 61.4
C01p45190 Brassica napus HOM05D005829 ORTHO05D007246 4.5e-29 132.1 114 61.4
BolC1t04492H Brassica oleracea HOM05D005829 ORTHO05D007246 4.5e-29 132.1 114 61.4
Gohir.A08G094610 Gossypium hirsutum HOM05D005829 ORTHO05D007246 4.5e-29 132.1 178 47.2
A07p29590 Brassica napus HOM05D005829 ORTHO05D007246 6.5e-28 128.3 217 43.8
Ca_00264_v3 Cicer arietinum L. HOM05D005829 ORTHO05D007246 6.5e-28 128.3 188 45.2
AT1G73885 Arabidopsis thaliana HOM05D005829 ORTHO05D007246 1.1e-27 127.5 191 45.5
Zm00001eb054790 Zea mays HOM05D005829 ORTHO05D007246 1.2e-26 124.0 158 50.0
BraA07t30600Z Brassica rapa HOM05D005829 ORTHO05D007246 1.6e-26 123.6 215 43.3
Medtr6g084620 Medicago truncatula HOM05D005829 ORTHO05D007246 3.6e-26 122.5 195 45.1
SEGI_06072 Sequoiadendron giganteum HOM05D005829 ORTHO05D007246 3.6e-26 122.5 161 44.1
Zm00001eb216440 Zea mays HOM05D005829 ORTHO05D007246 6.1e-26 121.7 189 46.0
BcaC03g15466 Brassica carinata HOM05D005829 ORTHO05D007246 1.4e-25 120.6 202 43.6
AagrBONN_evm.TU.Sc2ySwM_228.1174 Anthoceros agrestis HOM05D005829 ORTHO05D007246 1.8e-22 110.2 84 61.9
TPR.G35237 Trifolium pratense HOM05D005829 ORTHO05D007246 5.4e-22 108.6 100 56.0
AagrBONN_evm.TU.Sc2ySwM_228.2224 Anthoceros agrestis HOM05D005829 ORTHO05D007246 7.0e-22 108.2 84 60.7
Nn3g17806 Nelumbo nucifera HOM05D005829 ORTHO05D007246 1.0e-17 94.4 96 52.1
COL.COLO4_04672 Corchorus olitorius HOM05D005829 ORTHO05D007246 5.7e-16 88.6 157 39.5
THA.LOC104813291 Tarenaya hassleriana HOM05D005829 ORTHO05D007246 3.1e-14 82.8 69 68.1
AUR62025855 Chenopodium quinoa HOM05D005829 ORTHO05D007246 2.0e-13 80.1 148 41.2
AUR62029856 Chenopodium quinoa HOM05D005829 ORTHO05D007246 3.5e-13 79.3 144 38.9
Pp3c4_12650 Physcomitrium patens HOM05D005829 ORTHO05D007246 3.5e-13 79.3 148 34.5
Pp3c4_12780 Physcomitrium patens HOM05D005829 ORTHO05D007246 3.5e-13 79.3 148 34.5
Mapoly0028s0124 Marchantia polymorpha HOM05D005829 ORTHO05D007246 1.3e-12 77.4 120 39.2
FAN22G1271 Fragaria x ananassa HOM05D038641 ORTHO05D035590 1.7e-12 77.0 65 70.8
Actinidia24460 Actinidia chinensis HOM05D005829 ORTHO05D007246 8.6e-12 74.7 70 54.3
Phvul.004G158500 Phaseolus vulgaris HOM05D005829 ORTHO05D007246 7.3e-11 71.6 195 30.3
Glyma.07G090700 Glycine max HOM05D005829 ORTHO05D007246 3.1e-09 66.2 105 39.0
CBR_g29305 Chara braunii HOM05D005829 ORTHO05D007246 2.6e-08 63.2 36 72.2
VMungo0464G0155 Vigna mungo HOM05D006108 ORTHO05D007605 1.3e-07 60.8 163 29.4
Glyma.09G185300 Glycine max HOM05D005829 ORTHO05D007246 3.7e-07 59.3 195 30.3
FvH4_6g15641 Fragaria vesca HOM05D038641 ORTHO05D035590 9.2e-06 54.7 28 96.4
SMO232G0029 Selaginella moellendorffii HOM05D005829 ORTHO05D007246 9.2e-06 54.7 93 35.5


User provided reference genes

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