Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G3028 Fragaria x ananassa HOM05D006000 ORTHO05D007749 0.0e+00 1307.0 643 100.0
FAN08G3509 Fragaria x ananassa HOM05D006000 ORTHO05D007749 0.0e+00 1256.1 646 96.4
FvH4_5g06990 Fragaria vesca HOM05D006000 ORTHO05D007749 0.0e+00 1244.2 645 95.8
FAN04G1552 Fragaria x ananassa HOM05D006000 ORTHO05D007749 0.0e+00 1191.8 645 93.0
RcHm_v2.0_Chr7g0191691 Rosa chinensis HOM05D006000 ORTHO05D007749 0.0e+00 1180.6 644 90.8
Prupe.5G160400 Prunus persica HOM05D006000 ORTHO05D007749 2.1e-304 1048.5 646 78.9
MD14G1166100 Malus domestica HOM05D006000 ORTHO05D007749 2.3e-303 1045.0 650 79.5
MD06G1160100 Malus domestica HOM05D006000 ORTHO05D007749 3.2e-297 1024.6 651 78.5
Cfa018908 Carpinus fangiana HOM05D006000 ORTHO05D007749 6.3e-277 957.2 647 73.3
QL10p005632 Quercus lobata HOM05D006000 ORTHO05D007749 2.9e-274 948.3 651 72.0
Haze_07292 Corylus avellana HOM05D006000 ORTHO05D007749 4.0e-271 937.9 676 70.1
CANSAT80G1864 Cannabis sativa HOM05D006000 ORTHO05D007749 1.3e-269 932.9 649 70.0
Gohir.A03G063200 Gossypium hirsutum HOM05D006000 ORTHO05D007749 8.9e-263 910.2 644 68.2
Gorai.003G108600 Gossypium raimondii HOM05D006000 ORTHO05D007749 3.4e-262 908.3 645 68.5
THA.LOC104818202 Tarenaya hassleriana HOM05D006000 ORTHO05D007749 3.7e-261 904.8 648 68.8
Thhalv10010185m.g Eutrema salsugineum HOM05D006000 ORTHO05D007749 3.9e-258 894.8 651 67.0
GSVIVG01007577001 Vitis vinifera HOM05D006000 ORTHO05D007749 3.9e-258 894.8 652 68.1
TWI39G0152 Tripterygium wilfordii HOM05D006000 ORTHO05D007749 1.6e-256 889.4 649 67.0
Ciclev10024180m.g Citrus clementina HOM05D006000 ORTHO05D007749 4.0e-255 884.8 648 68.1
ClCG03G003330 Citrullus lanatus HOM05D006000 ORTHO05D007749 1.2e-254 883.2 649 67.2
AT3G48380 Arabidopsis thaliana HOM05D006000 ORTHO05D007749 2.0e-254 882.5 647 67.1
Manes.06G113400 Manihot esculenta HOM05D006000 ORTHO05D007749 9.8e-254 880.2 652 66.9
Sed0018918 Sechium edule HOM05D006000 ORTHO05D007749 1.1e-252 876.7 649 66.1
Carub.0005s1454 Capsella rubella HOM05D006000 ORTHO05D007749 4.1e-252 874.8 647 66.8
AL5G27780 Arabidopsis lyrata HOM05D006000 ORTHO05D007749 1.2e-251 873.2 647 66.6
TAR622G0802 Trochodendron aralioides HOM05D006000 ORTHO05D007749 2.1e-251 872.5 650 66.6
Sp5g13670 Schrenkiella parvula HOM05D006000 ORTHO05D007749 2.7e-251 872.1 648 66.4
BcaC07g39322 Brassica carinata HOM05D006000 ORTHO05D007749 1.0e-250 870.2 648 65.4
BcaB01g00818 Brassica carinata HOM05D006000 ORTHO05D007749 2.3e-250 869.0 649 66.3
Aa31LG4G16970 Aethionema arabicum HOM05D006000 ORTHO05D007749 5.1e-250 867.8 647 66.3
Thecc.03G120400 Theobroma cacao HOM05D006000 ORTHO05D007749 6.6e-250 867.5 645 65.7
C08p23370 Brassica napus HOM05D006000 ORTHO05D007749 2.5e-249 865.5 649 65.3
CARHR157150 Cardamine hirsuta HOM05D006000 ORTHO05D007749 2.5e-249 865.5 647 66.0
Lj9C473G6 Lonicera japonica HOM05D006000 ORTHO05D007749 7.3e-249 864.0 650 66.2
CSS0006429 Camellia sinensis var. sinensis HOM05D006000 ORTHO05D007749 9.5e-249 863.6 654 66.2
A06p19300 Brassica napus HOM05D006000 ORTHO05D007749 1.2e-248 863.2 649 64.9
Eucgr.B00167 Eucalyptus grandis HOM05D006000 ORTHO05D007749 1.8e-247 859.4 653 65.1
Psat5g139520 Pisum sativum HOM05D006000 ORTHO05D007749 3.1e-247 858.6 650 65.1
CSS0019701 Camellia sinensis var. sinensis HOM05D006000 ORTHO05D007749 4.0e-247 858.2 654 65.7
BolC8t49966H Brassica oleracea HOM05D006000 ORTHO05D007749 4.4e-246 854.7 660 64.1
Phvul.009G170100 Phaseolus vulgaris HOM05D006000 ORTHO05D007749 4.4e-246 854.7 646 66.3
Glyma.04G191400 Glycine max HOM05D006000 ORTHO05D007749 2.9e-245 852.0 650 65.5
BraA06t25013Z Brassica rapa HOM05D006000 ORTHO05D007749 1.1e-244 850.1 660 63.5
Gohir.D03G103100 Gossypium hirsutum HOM05D006000 ORTHO05D007749 1.9e-244 849.4 611 67.6
Hund05620 Selenicereus undatus HOM05D006000 ORTHO05D007749 3.2e-244 848.6 652 63.8
Lalb_Chr11g0069771 Lupinus albus HOM05D006000 ORTHO05D007749 2.7e-243 845.5 644 65.5
arahy.Tifrunner.gnm1.ann1.1AQ6ST Arachis hypogaea HOM05D006000 ORTHO05D007749 4.6e-243 844.7 624 68.8
Ca_16102_v3 Cicer arietinum L. HOM05D006000 ORTHO05D007749 4.6e-243 844.7 646 65.5
Ca_30078_v3 Cicer arietinum L. HOM05D006000 ORTHO05D007749 4.6e-243 844.7 646 65.5
Glyma.06G174400 Glycine max HOM05D006000 ORTHO05D007749 4.6e-243 844.7 646 65.5
Medtr3g075250 Medicago truncatula HOM05D006000 ORTHO05D007749 6.0e-243 844.3 647 66.0
arahy.Tifrunner.gnm1.ann1.9XY5HM Arachis hypogaea HOM05D006000 ORTHO05D007749 7.8e-243 844.0 623 68.5
CsaV3_1G009140 Cucumis sativus L. HOM05D006000 ORTHO05D007749 7.8e-243 844.0 647 64.0
VMungo1309G2614 Vigna mungo HOM05D006000 ORTHO05D007749 1.0e-242 843.6 645 65.6
Sc10g0010320 Simmondsia chinensis HOM05D006000 ORTHO05D007749 6.6e-242 840.9 652 64.3
Lj1g0007517 Lotus japonicus HOM05D006000 ORTHO05D007749 6.2e-240 834.3 648 65.3
CiPaw.12G034200 Carya illinoinensis HOM05D006000 ORTHO05D007749 3.4e-238 828.6 538 74.5
MELO3C002321.2 Cucumis melo HOM05D006000 ORTHO05D007749 2.9e-237 825.5 655 63.2
Sabra15G0111200 Salix brachista HOM05D006000 ORTHO05D007749 1.1e-236 823.5 616 67.2
vmacro16696 Vaccinium macrocarpon HOM05D006000 ORTHO05D007749 1.6e-235 819.7 654 63.0
PSO782G4995 Papaver somniferum HOM05D006000 ORTHO05D007749 2.1e-235 819.3 653 60.6
PGR083G2177 Punica granatum HOM05D006000 ORTHO05D007749 2.8e-232 808.9 657 61.8
PGSC0003DMG400015231 Solanum tuberosum HOM05D006000 ORTHO05D007749 1.8e-231 806.2 649 62.4
Nitab4.5_0001360g0160 Nicotiana tabacum HOM05D006000 ORTHO05D007749 2.4e-231 805.8 647 62.6
EL10Ac7g18048 Beta vulgaris HOM05D006000 ORTHO05D007749 5.3e-231 804.7 647 61.7
AUR62001257 Chenopodium quinoa HOM05D006000 ORTHO05D007749 9.0e-231 803.9 648 61.9
Migut.D02037 Erythranthe guttata HOM05D006000 ORTHO05D007749 1.2e-230 803.5 654 63.0
Oeu053502.2 Olea europaea HOM05D006000 ORTHO05D007749 1.3e-229 800.0 662 61.9
Nitab4.5_0006717g0030 Nicotiana tabacum HOM05D006000 ORTHO05D007749 1.4e-228 796.6 649 62.6
Lsat_1_v5_gn_5_13060 Lactuca sativa HOM05D006000 ORTHO05D007749 2.4e-228 795.8 650 61.1
Sopen03g030780 Solanum pennellii HOM05D006000 ORTHO05D007749 4.6e-227 791.6 648 61.3
Solyc03g111660.3 Solanum lycopersicum HOM05D006000 ORTHO05D007749 7.8e-227 790.8 651 61.4
HanXRQChr05g0156141 Helianthus annuus HOM05D006000 ORTHO05D007749 1.0e-226 790.4 649 61.8
CAN.G472.50 Capsicum annuum HOM05D006000 ORTHO05D007749 1.1e-225 786.9 649 61.6
Peaxi162Scf00089g00935 Petunia axillaris HOM05D006000 ORTHO05D007749 1.6e-224 783.1 648 62.0
MSTRG.4336 Avicennia marina HOM05D006000 ORTHO05D007749 8.1e-224 780.8 658 60.3
Rhsim12G0171000 Rhododendron simsii HOM05D006000 ORTHO05D007749 2.4e-223 779.2 613 63.5
ECA246G4586 Erigeron canadensis HOM05D006000 ORTHO05D007749 2.0e-222 776.2 657 59.8
TPR.G38611 Trifolium pratense HOM05D006000 ORTHO05D007749 9.9e-222 773.9 671 59.5
Cc04_g10700 Coffea canephora HOM05D006000 ORTHO05D007749 5.1e-218 761.5 658 58.5
Ah.15g095430 Amaranthus hybridus HOM05D006000 ORTHO05D007749 9.3e-212 740.7 647 58.1
HPP92_027096 Vanilla planifolia HOM05D006000 ORTHO05D007749 1.0e-210 737.3 651 56.5
CDE09G0792 Ceratophyllum demersum HOM05D006000 ORTHO05D007749 5.7e-209 731.5 650 56.5
Os12g0285500 Oryza sativa ssp. japonica HOM05D006000 ORTHO05D007749 4.8e-200 701.8 642 56.9
ATR0824G112 Amborella trichopoda HOM05D006000 ORTHO05D007749 1.2e-198 697.2 650 55.2
Nn4g22511 Nelumbo nucifera HOM05D006000 ORTHO05D007749 7.7e-198 694.5 571 60.6
Atru.chr9.985 Acer truncatum HOM05D006000 ORTHO05D007749 8.5e-189 664.5 511 65.6
Zm00001eb133430 Zea mays HOM05D006000 ORTHO05D007749 5.9e-182 641.7 683 51.2
Dinv11120 Davidia involucrata HOM05D006000 ORTHO05D007749 2.3e-178 629.8 498 63.7
HPP92_021434 Vanilla planifolia HOM05D006000 ORTHO05D007749 3.0e-178 629.4 586 54.1
Actinidia08849 Actinidia chinensis HOM05D006000 ORTHO05D007749 2.9e-173 612.8 619 54.8
Actinidia36773 Actinidia chinensis HOM05D006000 ORTHO05D007749 5.9e-166 588.6 578 55.2
SGA_v2.0_scaffold7G04178 Striga asiatica HOM05D006000 ORTHO05D007749 3.1e-159 566.2 663 48.0
Potri.015G088200 Populus trichocarpa HOM05D006000 ORTHO05D007749 8.9e-154 548.1 475 60.0
Dinv12561 Davidia involucrata HOM05D006000 ORTHO05D007749 4.1e-151 539.3 587 50.6
Mapoly0004s0201 Marchantia polymorpha HOM05D006000 ORTHO05D007749 6.0e-142 508.8 647 42.8
FvH4_5g06921 Fragaria vesca HOM05D006000 ORTHO05D007749 1.9e-140 503.8 271 93.7
SMO201G0062 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 6.0e-134 482.3 640 42.2
Pp3c6_16550 Physcomitrium patens HOM05D006000 ORTHO05D007749 1.7e-133 480.7 625 44.5
DCAR_016428 Daucus carota HOM05D006000 ORTHO05D007749 2.6e-121 440.3 254 83.1
SalBow8G1380 Salvia bowleyana HOM05D006000 ORTHO05D007749 4.4e-121 439.5 551 45.9
CBR_g41805 Chara braunii HOM05D006000 ORTHO05D007749 2.4e-111 407.1 758 34.7
FvH4_5g06950 Fragaria vesca HOM05D006000 ORTHO05D007749 9.9e-105 385.2 220 87.7
Cpa.g.sc4.40 Carica papaya HOM05D006000 ORTHO05D007749 6.4e-104 382.5 358 53.9
AagrBONN_evm.TU.Sc2ySwM_362.2604 Anthoceros agrestis HOM05D006000 ORTHO05D007749 1.6e-99 367.9 634 37.7
unitig_21.g20436 Utricularia gibba HOM05D006000 ORTHO05D007749 7.6e-97 359.0 478 43.9
arahy.Tifrunner.gnm1.ann1.HVEI7F Arachis hypogaea HOM05D006000 ORTHO05D007749 1.1e-95 355.1 294 62.2
Cre03.g197900 Chlamydomonas reinhardtii HOM05D006000 ORTHO05D007749 7.1e-95 352.4 501 40.9
DCAR_016429 Daucus carota HOM05D006000 ORTHO05D007749 2.3e-93 347.4 422 44.3
unitig_21.g20435 Utricularia gibba HOM05D006000 ORTHO05D007749 3.1e-90 337.0 178 84.8
HPP92_021417 Vanilla planifolia HOM05D006000 ORTHO05D007749 5.5e-79 299.7 197 71.1
Cpa.g.sc4.27 Carica papaya HOM05D006000 ORTHO05D008793 4.7e-54 216.9 170 63.5
SalBow8G5300 Salvia bowleyana HOM05D006000 ORTHO05D007749 5.7e-52 209.9 103 91.3
Cpa.g.sc4.41 Carica papaya HOM05D006000 ORTHO05D007749 6.3e-51 206.5 106 84.9
arahy.Tifrunner.gnm1.ann1.1X7LEL Arachis hypogaea HOM05D000074 ORTHO05D007749 4.5e-41 173.7 492 30.9
FvH4_5g06930 Fragaria vesca HOM05D006000 ORTHO05D007749 4.0e-37 160.6 137 62.0
FvH4_5g06922 Fragaria vesca HOM05D006000 ORTHO05D007749 1.8e-34 151.8 100 77.0
PRCOL_00005175 Prasinoderma coloniale HOM05D006000 ORTHO05D007749 2.4e-34 151.4 200 41.0
SMO201G0174 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 1.9e-31 141.7 184 42.4
TAR622G0554 Trochodendron aralioides HOM05D006000 ORTHO05D007749 5.2e-29 133.7 151 49.0
CAN.G546.38 Capsicum annuum HOM05D006000 ORTHO05D007749 2.9e-27 127.9 86 70.9
SGA_v2.0_scaffold115G32113 Striga asiatica HOM05D005956 ORTHO05D007197 1.0e-24 119.4 58 86.2
SMO328G0007 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 1.5e-23 115.5 83 63.9
Nitab4.5_0001094g0140 Nicotiana tabacum HOM05D006000 ORTHO05D007749 6.2e-22 110.2 102 52.9
arahy.Tifrunner.gnm1.ann1.0Z5YS0 Arachis hypogaea HOM05D001248 ORTHO05D007749 1.0e-16 92.8 72 59.7
Lsat_1_v5_gn_4_166800 Lactuca sativa HOM05D006000 ORTHO05D018009 6.6e-16 90.1 75 61.3
Lsat_1_v5_gn_3_61521 Lactuca sativa HOM05D006000 ORTHO05D018009 8.6e-16 89.7 74 62.2
Lsat_1_v5_gn_4_154121 Lactuca sativa HOM05D006000 ORTHO05D018009 1.1e-15 89.4 74 60.8
Lsat_1_v5_gn_2_53660 Lactuca sativa HOM05D003480 ORTHO05D018009 4.3e-15 87.4 74 60.8
Lsat_1_v5_gn_4_114361 Lactuca sativa HOM05D003480 ORTHO05D018009 5.6e-15 87.0 74 59.5
Lsat_1_v5_gn_6_19961 Lactuca sativa HOM05D003480 ORTHO05D018009 3.6e-14 84.3 74 59.5
CAN.G1014.24 Capsicum annuum HOM05D000846 ORTHO05D028464 2.4e-10 71.6 91 45.1
CAN.G755.4 Capsicum annuum HOM05D006000 ORTHO05D028464 7.1e-10 70.1 73 49.3
BcaB01g00966 Brassica carinata HOM05D006000 ORTHO05D007749 3.9e-08 64.3 153 34.0
Lsat_1_v5_gn_5_95420 Lactuca sativa HOM05D004927 ORTHO05D005798 2.5e-07 61.6 106 35.8
arahy.Tifrunner.gnm1.ann1.XFG60B Arachis hypogaea HOM05D006000 ORTHO05D007749 7.3e-07 60.1 92 43.5
arahy.Tifrunner.gnm1.ann1.L5KNWH Arachis hypogaea HOM05D006000 ORTHO05D007749 3.6e-06 57.8 88 44.3


User provided reference genes

Program Settings