Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G2988 Fragaria x ananassa HOM05D007790 ORTHO05D009880 7.8e-43 176.8 94 100.0
FvH4_5g12630 Fragaria vesca HOM05D007790 ORTHO05D009880 3.0e-42 174.9 94 98.9
FAN18G4544 Fragaria x ananassa HOM05D007790 ORTHO05D009880 3.2e-28 128.3 67 98.5
FAN04G3172 Fragaria x ananassa HOM05D007790 ORTHO05D009880 2.1e-27 125.6 67 95.5
FAN13G0824 Fragaria x ananassa HOM05D007790 ORTHO05D009880 2.1e-27 125.6 67 95.5
RcHm_v2.0_Chr7g0184711 Rosa chinensis HOM05D007790 ORTHO05D009880 2.1e-27 125.6 81 82.7
CANSAT64G1586 Cannabis sativa HOM05D007790 ORTHO05D009880 1.1e-17 93.2 60 76.7
Haze_18633 Corylus avellana HOM05D007790 ORTHO05D009880 1.1e-15 86.7 78 62.8
MD14G1222600 Malus domestica HOM05D007790 ORTHO05D009880 2.6e-14 82.0 56 75.0
Lj2g0008445 Lotus japonicus HOM05D007790 ORTHO05D009880 5.9e-14 80.9 61 67.2
Lalb_Chr09g0331121 Lupinus albus HOM05D007790 ORTHO05D009880 5.9e-14 80.9 63 68.3
CiPaw.16G084400 Carya illinoinensis HOM05D007790 ORTHO05D009880 7.7e-14 80.5 63 66.7
MD06G1212000 Malus domestica HOM05D007790 ORTHO05D009880 7.7e-14 80.5 60 75.0
Cfa019804 Carpinus fangiana HOM05D007790 ORTHO05D009880 2.2e-13 79.0 62 69.4
Glyma.07G088700 Glycine max HOM05D007790 ORTHO05D009880 2.2e-13 79.0 74 55.4
Phvul.003G060000 Phaseolus vulgaris HOM05D007790 ORTHO05D009880 2.2e-13 79.0 61 63.9
Thecc.03G029600 Theobroma cacao HOM05D007790 ORTHO05D009880 3.8e-13 78.2 78 56.4
Ciclev10023249m.g Citrus clementina HOM05D007790 ORTHO05D009880 6.5e-13 77.4 55 69.1
Psat3g006760 Pisum sativum HOM05D007790 ORTHO05D009880 1.1e-12 76.6 62 64.5
Sed0012152 Sechium edule HOM05D007790 ORTHO05D009880 1.1e-12 76.6 55 63.6
arahy.Tifrunner.gnm1.ann1.ZI6FWF Arachis hypogaea HOM05D007790 ORTHO05D009880 1.4e-12 76.3 90 48.9
Ca_09459_v3 Cicer arietinum L. HOM05D007790 ORTHO05D009880 1.4e-12 76.3 59 66.1
ClCG06G014960 Citrullus lanatus HOM05D007790 ORTHO05D009880 1.9e-12 75.9 55 63.6
Glyma.02G139000 Glycine max HOM05D007790 ORTHO05D009880 1.9e-12 75.9 61 62.3
Medtr7g115600 Medicago truncatula HOM05D007790 ORTHO05D009880 1.9e-12 75.9 62 62.9
PGR044G0624 Punica granatum HOM05D007790 ORTHO05D009880 1.9e-12 75.9 71 52.1
arahy.Tifrunner.gnm1.ann1.11NJV3 Arachis hypogaea HOM05D007790 ORTHO05D009880 3.2e-12 75.1 66 57.6
Atru.chr9.781 Acer truncatum HOM05D007790 ORTHO05D009880 4.2e-12 74.7 67 62.7
A05p31120 Brassica napus HOM05D007790 ORTHO05D009880 5.5e-12 74.3 90 47.8
CsaV3_1G003680 Cucumis sativus L. HOM05D007790 ORTHO05D009880 5.5e-12 74.3 51 64.7
Duzib068G0515 Durio zibethinus HOM05D007790 ORTHO05D009880 5.5e-12 74.3 62 67.7
Potri.011G140300 Populus trichocarpa HOM05D007790 ORTHO05D009880 5.5e-12 74.3 51 70.6
Actinidia18942 Actinidia chinensis HOM05D007790 ORTHO05D009880 7.2e-12 73.9 62 62.9
Actinidia35077 Actinidia chinensis HOM05D007790 ORTHO05D009880 7.2e-12 73.9 62 61.3
BcaB06g25895 Brassica carinata HOM05D007790 ORTHO05D009880 9.4e-12 73.6 64 57.8
MELO3C017293.2 Cucumis melo HOM05D007790 ORTHO05D009880 9.4e-12 73.6 51 66.7
Manes.01G020200 Manihot esculenta HOM05D007790 ORTHO05D009880 9.4e-12 73.6 62 62.9
vmacro22488 Vaccinium macrocarpon HOM05D007790 ORTHO05D009880 9.4e-12 73.6 54 64.8
C05p47140 Brassica napus HOM05D007790 ORTHO05D009880 2.1e-11 72.4 83 45.8
Hma1.2p1_0151F.1_g067280 Hydrangea macrophylla HOM05D007790 ORTHO05D009880 4.6e-11 71.2 62 66.1
BraA05t21954Z Brassica rapa HOM05D007790 ORTHO05D009880 6.1e-11 70.9 54 61.1
Nitab4.5_0000410g0040 Nicotiana tabacum HOM05D007790 ORTHO05D009880 7.9e-11 70.5 51 66.7
Eucgr.K02661 Eucalyptus grandis HOM05D007790 ORTHO05D009880 1.0e-10 70.1 62 56.5
Gohir.D12G266000 Gossypium hirsutum HOM05D007790 ORTHO05D009880 1.0e-10 70.1 62 62.9
Gorai.008G285700 Gossypium raimondii HOM05D007790 ORTHO05D009880 1.0e-10 70.1 62 62.9
Cpa.g.sc13.39 Carica papaya HOM05D007790 ORTHO05D009880 1.4e-10 69.7 62 64.5
THA.LOC109116948 Tarenaya hassleriana HOM05D007790 ORTHO05D009880 1.4e-10 69.7 46 69.6
BcaC05g28610 Brassica carinata HOM05D007790 ORTHO05D009880 1.8e-10 69.3 54 59.3
BolC5t33440H Brassica oleracea HOM05D007790 ORTHO05D009880 1.8e-10 69.3 54 59.3
Sc10g0009520 Simmondsia chinensis HOM05D007790 ORTHO05D009880 1.8e-10 69.3 56 64.3
TWI81G0366 Tripterygium wilfordii HOM05D007790 ORTHO05D009880 1.8e-10 69.3 59 66.1
Gohir.A12G265800 Gossypium hirsutum HOM05D007790 ORTHO05D009880 2.3e-10 68.9 62 61.3
Nitab4.5_0001599g0140 Nicotiana tabacum HOM05D007790 ORTHO05D009880 2.3e-10 68.9 50 66.0
Aa31LG8G5350 Aethionema arabicum HOM05D007790 ORTHO05D009880 3.9e-10 68.2 61 55.7
CSS0043662 Camellia sinensis var. sinensis HOM05D007790 ORTHO05D009880 5.1e-10 67.8 62 59.7
Thhalv10021890m.g Eutrema salsugineum HOM05D007790 ORTHO05D009880 5.1e-10 67.8 64 51.6
Solyc03g119723.1 Solanum lycopersicum HOM05D007790 ORTHO05D009880 5.1e-10 67.8 51 62.7
Sopen03g038570 Solanum pennellii HOM05D007790 ORTHO05D009880 5.1e-10 67.8 51 62.7
AT3G18510 Arabidopsis thaliana HOM05D007790 ORTHO05D009880 6.7e-10 67.4 64 53.1
Hund18110 Selenicereus undatus HOM05D007790 ORTHO05D009880 6.7e-10 67.4 62 56.5
Lsat_1_v5_gn_5_25161 Lactuca sativa HOM05D007790 ORTHO05D009880 8.8e-10 67.0 59 54.2
Peaxi162Scf00015g00827 Petunia axillaris HOM05D007790 ORTHO05D009880 1.5e-09 66.2 51 60.8
DCAR_011206 Daucus carota HOM05D007790 ORTHO05D009880 2.5e-09 65.5 58 56.9
PSO782G1288 Papaver somniferum HOM05D007790 ORTHO05D009880 2.5e-09 65.5 65 55.4
C01p45710 Brassica napus HOM05D007790 ORTHO05D009880 3.3e-09 65.1 74 44.6
BolC1t04534H Brassica oleracea HOM05D007790 ORTHO05D009880 3.3e-09 65.1 65 50.8
Cc04_g07440 Coffea canephora HOM05D007790 ORTHO05D009880 4.3e-09 64.7 61 55.7
BcaB04g20771 Brassica carinata HOM05D007790 ORTHO05D009880 5.7e-09 64.3 64 50.0
Carub.0003s1829 Capsella rubella HOM05D007790 ORTHO05D009880 5.7e-09 64.3 62 51.6
Sp3g16600 Schrenkiella parvula HOM05D007790 ORTHO05D009880 5.7e-09 64.3 55 52.7
BcaC09g48808 Brassica carinata HOM05D007790 ORTHO05D009880 7.4e-09 63.9 65 49.2
Os06g0618300 Oryza sativa ssp. japonica HOM05D007790 ORTHO05D009880 7.4e-09 63.9 64 54.7
AL3G31810 Arabidopsis lyrata HOM05D007790 ORTHO05D009880 9.7e-09 63.5 68 48.5
EL10Ac1g02162 Beta vulgaris HOM05D007790 ORTHO05D009880 1.7e-08 62.8 61 54.1
CARHR093880 Cardamine hirsuta HOM05D007790 ORTHO05D009880 2.2e-08 62.4 54 55.6
SGA_v2.0_scaffold69G23333 Striga asiatica HOM05D027511 ORTHO05D009880 6.3e-08 60.8 55 58.2
SGA_v2.0_scaffold569G52962 Striga asiatica HOM05D007790 ORTHO05D009880 8.2e-08 60.5 59 54.2
ATR0681G001 Amborella trichopoda HOM05D007790 ORTHO05D009880 3.1e-07 58.5 55 52.7
Glyma.07G167700 Glycine max HOM05D007790 ORTHO05D009880 6.9e-07 57.4 60 50.0
Migut.I00921 Erythranthe guttata HOM05D007790 ORTHO05D009880 2.0e-06 55.8 64 46.9
unitig_748.g8096 Utricularia gibba HOM05D007790 ORTHO05D009880 2.0e-06 55.8 51 52.9
SalBow2G0723 Salvia bowleyana HOM05D007790 ORTHO05D009880 3.4e-06 55.1 63 44.4


User provided reference genes

Program Settings