Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G2904 Fragaria x ananassa HOM05D008495 ORTHO05D012517 3.9e-63 244.6 120 100.0
FvH4_5g11090 Fragaria vesca HOM05D001011 ORTHO05D035356 4.3e-62 241.1 119 98.3
FvH4_5g11160 Fragaria vesca HOM05D008495 ORTHO05D035356 4.3e-62 241.1 119 98.3
FAN13G1190 Fragaria x ananassa HOM05D008495 ORTHO05D012517 1.6e-61 239.2 119 96.6
FAN18G0250 Fragaria x ananassa HOM05D008495 ORTHO05D012517 1.7e-58 229.2 116 96.6
FAN08G0175 Fragaria x ananassa HOM05D030830 ORTHO05D035356 6.5e-58 227.3 136 84.6
FAN04G0325 Fragaria x ananassa HOM05D008495 ORTHO05D012517 3.1e-52 208.4 107 95.3
FAN18G3095 Fragaria x ananassa HOM05D008495 ORTHO05D012517 4.8e-45 184.5 119 68.9
FAN13G0180 Fragaria x ananassa HOM05D000248 ORTHO05D000146 1.1e-44 183.3 119 68.9
FAN13G1491 Fragaria x ananassa HOM05D000248 ORTHO05D000146 1.1e-44 183.3 119 68.9
FAN13G1701 Fragaria x ananassa HOM05D000248 ORTHO05D000146 1.1e-44 183.3 119 68.9
FAN13G1884 Fragaria x ananassa HOM05D000248 ORTHO05D000146 1.1e-44 183.3 119 68.9
FAN13G2559 Fragaria x ananassa HOM05D000248 ORTHO05D000146 1.1e-44 183.3 119 68.9
FAN13G2794 Fragaria x ananassa HOM05D000248 ORTHO05D000146 1.1e-44 183.3 119 68.9
FAN13G3019 Fragaria x ananassa HOM05D000248 ORTHO05D000146 1.1e-44 183.3 119 68.9
FAN13G3219 Fragaria x ananassa HOM05D000248 ORTHO05D000146 1.1e-44 183.3 119 68.9
RcHm_v2.0_Chr7g0186691 Rosa chinensis HOM05D000529 ORTHO05D012517 1.8e-44 182.6 119 68.1
FAN13G2246 Fragaria x ananassa HOM05D000248 ORTHO05D000146 3.1e-44 181.8 119 68.1
FAN08G1641 Fragaria x ananassa HOM05D000083 ORTHO05D025348 2.3e-39 165.6 118 64.4
RcHm_v2.0_Chr2g0102741 Rosa chinensis HOM05D001084 ORTHO05D001275 3.9e-39 164.9 119 66.4
FAN13G2049 Fragaria x ananassa HOM05D000306 ORTHO05D025348 8.8e-39 163.7 118 63.6
FvH4_5g11250 Fragaria vesca HOM05D000306 ORTHO05D025348 3.3e-38 161.8 118 62.7
FAN18G0367 Fragaria x ananassa HOM05D000083 ORTHO05D025348 4.4e-38 161.4 118 61.9
FAN18G3041 Fragaria x ananassa HOM05D000083 ORTHO05D025348 4.4e-38 161.4 118 61.9
FvH4_5g11210 Fragaria vesca HOM05D000248 ORTHO05D000146 2.9e-34 148.7 117 61.5
FvH4_5g11100 Fragaria vesca HOM05D000248 ORTHO05D000146 1.1e-33 146.7 117 61.5
FAN18G1596 Fragaria x ananassa HOM05D000248 ORTHO05D017958 1.1e-33 146.7 117 61.5
FAN18G3118 Fragaria x ananassa HOM05D000248 ORTHO05D000146 1.1e-33 146.7 117 61.5
FAN19G2196 Fragaria x ananassa HOM05D001084 ORTHO05D001275 5.5e-33 144.4 109 63.3
FvH4_1g13670 Fragaria vesca HOM05D008495 ORTHO05D012517 9.4e-33 143.7 109 63.3
FAN08G3301 Fragaria x ananassa HOM05D000248 ORTHO05D017958 2.7e-32 142.1 117 59.0
FAN26G0747 Fragaria x ananassa HOM05D001563 ORTHO05D000761 1.0e-31 140.2 109 60.6
FAN13G2367 Fragaria x ananassa HOM05D000248 ORTHO05D000146 6.7e-31 137.5 115 59.1
RcHm_v2.0_Chr7g0186641 Rosa chinensis HOM05D000248 ORTHO05D000146 3.7e-29 131.7 120 54.2
Prupe.5G127900 Prunus persica HOM05D000529 ORTHO05D012517 6.5e-26 120.9 111 53.2
MD06G1115200 Malus domestica HOM05D000081 ORTHO05D000036 8.5e-26 120.6 111 53.2
MD02G1022000 Malus domestica HOM05D008495 ORTHO05D025806 3.3e-22 108.6 117 47.0
MD02G1021700 Malus domestica HOM05D000041 ORTHO05D001532 9.7e-22 107.1 117 47.0
FvH4_1g13660 Fragaria vesca HOM05D001084 ORTHO05D001275 1.7e-21 106.3 83 59.0
MD15G1278700 Malus domestica HOM05D000046 ORTHO05D025806 2.2e-21 105.9 117 46.2
FAN01G0007 Fragaria x ananassa HOM05D008495 ORTHO05D012517 2.8e-21 105.5 82 61.0
MD06G1115400 Malus domestica HOM05D000529 ORTHO05D025806 9.1e-20 100.5 122 46.7
Prupe.7G138400 Prunus persica HOM05D000046 ORTHO05D025806 3.5e-19 98.6 117 44.4
RcHm_v2.0_Chr2g0104561 Rosa chinensis HOM05D000046 ORTHO05D025806 7.7e-19 97.4 117 41.0
RcHm_v2.0_Chr1g0337761 Rosa chinensis HOM05D008495 ORTHO05D012517 5.5e-17 91.3 94 46.8
RcHm_v2.0_Chr2g0102961 Rosa chinensis HOM05D000046 ORTHO05D020739 1.0e-15 87.0 123 42.3
FvH4_1g15500 Fragaria vesca HOM05D000529 ORTHO05D000472 4.0e-15 85.1 110 41.8
RcHm_v2.0_Chr2g0104621 Rosa chinensis HOM05D000046 ORTHO05D020635 6.8e-15 84.3 110 40.9
RcHm_v2.0_Chr7g0186631 Rosa chinensis HOM05D008495 ORTHO05D017958 8.8e-15 84.0 115 39.1
FAN02G0225 Fragaria x ananassa HOM05D008495 ORTHO05D010311 1.2e-14 83.6 122 40.2
FAN26G1753 Fragaria x ananassa HOM05D000046 ORTHO05D020739 3.4e-14 82.0 110 40.9
FAN08G3275 Fragaria x ananassa HOM05D000248 ORTHO05D012517 5.7e-14 81.3 47 66.0
FAN26G3207 Fragaria x ananassa HOM05D000529 ORTHO05D000472 1.3e-13 80.1 110 40.0
FAN13G1716 Fragaria x ananassa HOM05D000248 ORTHO05D012517 1.7e-13 79.7 47 66.0
FAN13G1987 Fragaria x ananassa HOM05D000248 ORTHO05D012517 1.7e-13 79.7 47 66.0
FvH4_7g14830 Fragaria vesca HOM05D000166 ORTHO05D001532 4.8e-13 78.2 47 76.6
FAN13G2003 Fragaria x ananassa HOM05D000248 ORTHO05D000146 4.8e-13 78.2 47 66.0
RcHm_v2.0_Chr2g0143661 Rosa chinensis HOM05D003771 ORTHO05D010311 4.8e-13 78.2 116 38.8
FAN06G0595 Fragaria x ananassa HOM05D000166 ORTHO05D001532 1.1e-12 77.0 47 76.6
FAN23G0627 Fragaria x ananassa HOM05D000046 ORTHO05D020739 1.1e-12 77.0 110 39.1
MD08G1007800 Malus domestica HOM05D000013 ORTHO05D248450 1.8e-12 76.3 119 32.8
FAN23G2692 Fragaria x ananassa HOM05D000529 ORTHO05D000472 3.1e-12 75.5 117 35.0
FvH4_5g03550 Fragaria vesca HOM05D008495 ORTHO05D022638 4.1e-12 75.1 120 40.8
FAN18G0704 Fragaria x ananassa HOM05D008495 ORTHO05D022638 4.1e-12 75.1 120 40.8
FAN04G0406 Fragaria x ananassa HOM05D008495 ORTHO05D022638 5.4e-12 74.7 122 40.2
FAN28G0855 Fragaria x ananassa HOM05D000529 ORTHO05D000472 9.1e-12 73.9 117 35.0
FvH4_1g15270 Fragaria vesca HOM05D000046 ORTHO05D010311 1.2e-11 73.6 123 35.0
FvH4_5g03510 Fragaria vesca HOM05D008495 ORTHO05D029605 1.2e-11 73.6 111 40.5
FAN08G1127 Fragaria x ananassa HOM05D008495 ORTHO05D022578 1.2e-11 73.6 118 39.8
FAN13G3081 Fragaria x ananassa HOM05D008495 ORTHO05D022638 1.2e-11 73.6 118 39.8
FAN18G4342 Fragaria x ananassa HOM05D008495 ORTHO05D029605 1.2e-11 73.6 111 40.5
FAN19G1335 Fragaria x ananassa HOM05D008495 ORTHO05D022578 1.6e-11 73.2 110 40.9
FvH4_5g11120 Fragaria vesca HOM05D000248 ORTHO05D017958 2.0e-11 72.8 112 36.6
FvH4_5g11230 Fragaria vesca HOM05D000248 ORTHO05D017958 2.0e-11 72.8 112 36.6
FAN13G1363 Fragaria x ananassa HOM05D008495 ORTHO05D029605 2.0e-11 72.8 111 40.5
FAN13G2265 Fragaria x ananassa HOM05D008495 ORTHO05D029605 2.0e-11 72.8 111 40.5
FAN13G2602 Fragaria x ananassa HOM05D000248 ORTHO05D017958 2.0e-11 72.8 112 36.6
Prupe.5G127800 Prunus persica HOM05D008495 ORTHO05D010311 2.0e-11 72.8 90 46.7
FvH4_5g11200 Fragaria vesca HOM05D000248 ORTHO05D017958 2.7e-11 72.4 112 36.6
RcHm_v2.0_Chr1g0373981 Rosa chinensis HOM05D000614 ORTHO05D000463 2.7e-11 72.4 41 70.7
FAN04G2910 Fragaria x ananassa HOM05D008495 ORTHO05D022578 4.5e-11 71.6 111 40.5
FAN23G1659 Fragaria x ananassa HOM05D000891 ORTHO05D000761 5.9e-11 71.2 111 36.9
FAN19G2244 Fragaria x ananassa HOM05D000046 ORTHO05D020635 7.7e-11 70.9 99 38.4
FAN23G2720 Fragaria x ananassa HOM05D000046 ORTHO05D020635 7.7e-11 70.9 100 39.0
RcHm_v2.0_Chr2g0104831 Rosa chinensis HOM05D000083 ORTHO05D002708 7.7e-11 70.9 110 35.5
FAN19G2597 Fragaria x ananassa HOM05D000529 ORTHO05D000472 1.0e-10 70.5 117 34.2
RcHm_v2.0_Chr2g0104741 Rosa chinensis HOM05D000529 ORTHO05D000472 1.0e-10 70.5 121 35.5
RcHm_v2.0_Chr2g0104761 Rosa chinensis HOM05D000529 ORTHO05D000472 1.0e-10 70.5 90 42.2
FvH4_1g15220 Fragaria vesca HOM05D000529 ORTHO05D000472 1.3e-10 70.1 117 33.3
FvH4_1g15430 Fragaria vesca HOM05D000046 ORTHO05D020635 1.3e-10 70.1 99 38.4
FAN26G0958 Fragaria x ananassa HOM05D000529 ORTHO05D000472 1.3e-10 70.1 120 35.0
FvH4_5g11180 Fragaria vesca HOM05D000248 ORTHO05D010311 2.3e-10 69.3 47 63.8
FAN26G2562 Fragaria x ananassa HOM05D000046 ORTHO05D207025 2.3e-10 69.3 123 35.0
FvH4_1g15300 Fragaria vesca HOM05D008495 ORTHO05D022578 2.9e-10 68.9 110 38.2
FAN08G2107 Fragaria x ananassa HOM05D008495 ORTHO05D022578 2.9e-10 68.9 111 37.8
FAN18G4033 Fragaria x ananassa HOM05D000248 ORTHO05D017958 2.9e-10 68.9 112 34.8
FAN26G2300 Fragaria x ananassa HOM05D000046 ORTHO05D020635 2.9e-10 68.9 99 38.4
FvH4_1g15090 Fragaria vesca HOM05D000529 ORTHO05D000472 3.8e-10 68.6 110 35.5
FAN04G1506 Fragaria x ananassa HOM05D008495 ORTHO05D022578 5.0e-10 68.2 111 40.5
FAN28G0545 Fragaria x ananassa HOM05D000529 ORTHO05D000472 6.6e-10 67.8 110 36.4
QL06p042852 Quercus lobata HOM05D000529 ORTHO05D000472 6.6e-10 67.8 109 35.8
FvH4_1g15120 Fragaria vesca HOM05D000529 ORTHO05D000472 8.6e-10 67.4 110 33.6
FAN19G1579 Fragaria x ananassa HOM05D008495 ORTHO05D020679 1.9e-09 66.2 110 36.4
FAN06G0627 Fragaria x ananassa HOM05D000166 ORTHO05D001532 2.5e-09 65.9 41 73.2
Prupe.7G139600 Prunus persica HOM05D000529 ORTHO05D000472 3.3e-09 65.5 107 38.3
Haze_15451 Corylus avellana HOM05D000529 ORTHO05D000472 4.2e-09 65.1 109 33.0
FvH4_1g15040 Fragaria vesca HOM05D008495 ORTHO05D020679 5.5e-09 64.7 110 35.5
FvH4_1g15330 Fragaria vesca HOM05D000529 ORTHO05D000472 5.5e-09 64.7 117 34.2
FAN28G2465 Fragaria x ananassa HOM05D001563 ORTHO05D001956 5.5e-09 64.7 58 56.9
RcHm_v2.0_Chr2g0104151 Rosa chinensis HOM05D000529 ORTHO05D000472 7.2e-09 64.3 82 36.6
MD02G1165900 Malus domestica HOM05D000529 ORTHO05D010311 1.2e-08 63.5 110 31.8
Prupe.7G139800 Prunus persica HOM05D000529 ORTHO05D000472 1.2e-08 63.5 116 37.1
RcHm_v2.0_Chr2g0104571 Rosa chinensis HOM05D000046 ORTHO05D000195 1.2e-08 63.5 84 42.9
FAN28G1072 Fragaria x ananassa HOM05D008495 ORTHO05D020679 2.1e-08 62.8 110 34.5
CiPaw.01G025100 Carya illinoinensis HOM05D000529 ORTHO05D000472 3.6e-08 62.0 117 33.3
Haze_15448 Corylus avellana HOM05D000529 ORTHO05D000472 3.6e-08 62.0 104 35.6
CiPaw.01G024600 Carya illinoinensis HOM05D000529 ORTHO05D000472 4.7e-08 61.6 118 33.1
FAN23G1609 Fragaria x ananassa HOM05D008495 ORTHO05D020739 6.1e-08 61.2 83 41.0
RcHm_v2.0_Chr2g0104121 Rosa chinensis HOM05D000529 ORTHO05D000472 6.1e-08 61.2 110 30.9
CiPaw.01G025200 Carya illinoinensis HOM05D000529 ORTHO05D000472 8.0e-08 60.8 117 33.3
RcHm_v2.0_Chr2g0104731 Rosa chinensis HOM05D000577 ORTHO05D003509 8.0e-08 60.8 121 34.7
RcHm_v2.0_Chr7g0230551 Rosa chinensis HOM05D000529 ORTHO05D010311 8.0e-08 60.8 104 33.7
FAN08G1780 Fragaria x ananassa HOM05D000529 ORTHO05D010311 1.0e-07 60.5 108 32.4
Prupe.7G140400 Prunus persica HOM05D000529 ORTHO05D020679 1.0e-07 60.5 117 33.3
RcHm_v2.0_Chr2g0104631 Rosa chinensis HOM05D008495 ORTHO05D020635 1.0e-07 60.5 87 40.2
RcHm_v2.0_Chr2g0104171 Rosa chinensis HOM05D000529 ORTHO05D000472 3.0e-07 58.9 110 31.8
CiPaw.01G103200 Carya illinoinensis HOM05D000529 ORTHO05D000472 6.8e-07 57.8 117 32.5
FvH4_1g15160 Fragaria vesca HOM05D000529 ORTHO05D000472 1.2e-06 57.0 109 32.1
FAN08G3343 Fragaria x ananassa HOM05D000529 ORTHO05D010311 1.2e-06 57.0 87 34.5
FAN18G0985 Fragaria x ananassa HOM05D008495 ORTHO05D022638 1.2e-06 57.0 120 34.2
FAN19G2554 Fragaria x ananassa HOM05D000529 ORTHO05D000472 1.2e-06 57.0 109 32.1
FvH4_5g32830 Fragaria vesca HOM05D000529 ORTHO05D010311 1.5e-06 56.6 108 32.4
MD02G1164300 Malus domestica HOM05D000529 ORTHO05D000472 1.5e-06 56.6 110 35.5
RcHm_v2.0_Chr2g0104191 Rosa chinensis HOM05D000529 ORTHO05D000472 1.5e-06 56.6 83 36.1
FAN02G0723 Fragaria x ananassa HOM05D000529 ORTHO05D010311 2.6e-06 55.8 116 31.0
FAN04G0459 Fragaria x ananassa HOM05D000529 ORTHO05D010311 2.6e-06 55.8 87 34.5
RcHm_v2.0_Chr7g0230701 Rosa chinensis HOM05D000529 ORTHO05D010311 2.6e-06 55.8 90 36.7
Cfa003971 Carpinus fangiana HOM05D000529 ORTHO05D000472 3.4e-06 55.5 106 34.0
FAN18G2317 Fragaria x ananassa HOM05D008495 ORTHO05D010311 3.4e-06 55.5 110 30.9
MD15G1276900 Malus domestica HOM05D000529 ORTHO05D000472 3.4e-06 55.5 110 35.5
FAN18G1950 Fragaria x ananassa HOM05D000529 ORTHO05D010311 4.4e-06 55.1 94 35.1
MD02G1164700 Malus domestica HOM05D000529 ORTHO05D000472 4.4e-06 55.1 110 34.5
FvH4_5g03530 Fragaria vesca HOM05D008495 ORTHO05D020679 5.7e-06 54.7 89 37.1
MD02G1164800 Malus domestica HOM05D000529 ORTHO05D000472 5.7e-06 54.7 110 29.1
FAN28G0950 Fragaria x ananassa HOM05D000046 ORTHO05D020635 9.8e-06 53.9 76 36.8


User provided reference genes

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