Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G2835 Fragaria x ananassa HOM05D003497 ORTHO05D003964 1.5e-186 656.0 329 100.0
FvH4_5g20811 Fragaria vesca HOM05D003497 ORTHO05D003964 6.1e-183 644.0 329 98.8
FAN04G2985 Fragaria x ananassa HOM05D003497 ORTHO05D003964 4.0e-166 588.2 323 93.8
RcHm_v2.0_Chr4g0407391 Rosa chinensis HOM05D003497 ORTHO05D003964 3.1e-118 429.1 326 69.9
Prupe.8G150500 Prunus persica HOM05D003497 ORTHO05D003964 7.0e-46 188.7 293 43.3
RcHm_v2.0_Chr4g0407381 Rosa chinensis HOM05D003497 ORTHO05D003964 1.5e-40 171.0 318 40.6
Thecc.02G120200 Theobroma cacao HOM05D003497 ORTHO05D003964 9.1e-38 161.8 294 38.4
FvH4_2g03310 Fragaria vesca HOM05D003497 ORTHO05D003964 3.5e-37 159.8 294 38.4
Sabra05G0090000 Salix brachista HOM05D003497 ORTHO05D003964 3.5e-37 159.8 296 37.2
GSVIVG01037051001 Vitis vinifera HOM05D003497 ORTHO05D003964 3.5e-37 159.8 298 36.6
TWI14G1256 Tripterygium wilfordii HOM05D003497 ORTHO05D003964 1.0e-36 158.3 314 36.9
QL11p029247 Quercus lobata HOM05D003497 ORTHO05D003964 5.0e-36 156.0 299 38.5
COL.COLO4_32482 Corchorus olitorius HOM05D003497 ORTHO05D003964 8.6e-36 155.2 291 36.1
FAN20G1538 Fragaria x ananassa HOM05D003497 ORTHO05D003964 8.6e-36 155.2 294 38.8
FAN20G2306 Fragaria x ananassa HOM05D003497 ORTHO05D003964 8.6e-36 155.2 294 38.8
RcHm_v2.0_Chr6g0248431 Rosa chinensis HOM05D003497 ORTHO05D003964 8.6e-36 155.2 300 36.7
FAN27G0942 Fragaria x ananassa HOM05D003497 ORTHO05D003964 2.5e-35 153.7 294 38.1
Potri.005G109700 Populus trichocarpa HOM05D003497 ORTHO05D003964 2.5e-35 153.7 298 36.2
CSS0013739 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 4.2e-35 152.9 302 35.8
MELO3C018024.2 Cucumis melo HOM05D003497 ORTHO05D003964 9.5e-35 151.8 293 39.6
Duzib132G0146 Durio zibethinus HOM05D003497 ORTHO05D003964 3.6e-34 149.8 300 37.7
MD10G1110600 Malus domestica HOM05D003497 ORTHO05D003964 1.0e-33 148.3 262 40.1
Atru.chr5.2290 Acer truncatum HOM05D003497 ORTHO05D003964 3.0e-33 146.7 296 34.1
CiPaw.06G163900 Carya illinoinensis HOM05D003497 ORTHO05D003964 5.2e-33 146.0 307 39.1
Cfa004695 Carpinus fangiana HOM05D003497 ORTHO05D003964 6.8e-33 145.6 292 37.0
ClCG10G010030 Citrullus lanatus HOM05D003497 ORTHO05D003964 6.8e-33 145.6 264 39.0
CsaV3_4G000070 Cucumis sativus L. HOM05D003497 ORTHO05D003964 1.2e-32 144.8 290 37.2
Nn6g34530 Nelumbo nucifera HOM05D003497 ORTHO05D003964 1.5e-32 144.4 304 34.5
MSTRG.16671 Avicennia marina HOM05D003497 ORTHO05D003964 2.0e-32 144.1 289 37.0
AUR62027025 Chenopodium quinoa HOM05D003497 ORTHO05D003964 2.0e-32 144.1 306 34.3
Gohir.A13G047900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 3.4e-32 143.3 293 36.5
Nn3g19312 Nelumbo nucifera HOM05D003497 ORTHO05D003964 4.4e-32 142.9 304 34.5
AUR62030867 Chenopodium quinoa HOM05D003497 ORTHO05D003964 7.5e-32 142.1 309 33.7
Eucgr.G00280 Eucalyptus grandis HOM05D003497 ORTHO05D003964 7.5e-32 142.1 296 35.1
Gohir.D13G046300 Gossypium hirsutum HOM05D003497 ORTHO05D003964 9.8e-32 141.7 287 36.6
Gorai.013G052000 Gossypium raimondii HOM05D003497 ORTHO05D003964 1.7e-31 141.0 289 36.0
RcHm_v2.0_Chr4g0407371 Rosa chinensis HOM05D003497 ORTHO05D003964 2.2e-31 140.6 317 33.8
CANSAT25G1915 Cannabis sativa HOM05D003497 ORTHO05D003964 2.8e-31 140.2 301 36.9
Haze_10291 Corylus avellana HOM05D003497 ORTHO05D003964 6.3e-31 139.0 290 36.6
DCAR_021943 Daucus carota HOM05D003497 ORTHO05D003964 8.3e-31 138.7 320 35.6
TWI14G0922 Tripterygium wilfordii HOM05D003497 ORTHO05D003964 8.3e-31 138.7 305 34.8
HanXRQChr16g0502181 Helianthus annuus HOM05D003497 ORTHO05D003964 1.1e-30 138.3 318 35.2
MD05G1106300 Malus domestica HOM05D003497 ORTHO05D003964 1.1e-30 138.3 303 36.6
Actinidia28001 Actinidia chinensis HOM05D000349 ORTHO05D003964 2.4e-30 137.1 300 36.3
Gorai.005G229700 Gossypium raimondii HOM05D003497 ORTHO05D003964 3.1e-30 136.7 311 32.8
Ciclev10028208m.g Citrus clementina HOM05D003497 ORTHO05D003964 4.1e-30 136.3 285 34.4
Gohir.A03G180900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 4.1e-30 136.3 318 31.8
Rhsim05G0093000 Rhododendron simsii HOM05D003497 ORTHO05D003964 5.4e-30 136.0 299 35.5
TAR625G0452 Trochodendron aralioides HOM05D003497 ORTHO05D003964 5.4e-30 136.0 303 34.3
Atru.chr5.2286 Acer truncatum HOM05D003497 ORTHO05D003964 7.0e-30 135.6 289 33.6
CSS0013379 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 7.0e-30 135.6 305 35.4
Ah.01g007110 Amaranthus hybridus HOM05D003497 ORTHO05D003964 9.2e-30 135.2 315 34.0
Haze_10298 Corylus avellana HOM05D003497 ORTHO05D003964 9.2e-30 135.2 285 35.8
Gohir.D02G203142 Gossypium hirsutum HOM05D003497 ORTHO05D004787 9.2e-30 135.2 311 32.5
Sed0023460 Sechium edule HOM05D003497 ORTHO05D003964 9.2e-30 135.2 293 34.8
SGA_v2.0_scaffold225G43063 Striga asiatica HOM05D003497 ORTHO05D003964 1.6e-29 134.4 307 33.2
Oeu025307.1 Olea europaea HOM05D003497 ORTHO05D003964 2.7e-29 133.7 321 34.0
Eucgr.I02495 Eucalyptus grandis HOM05D003497 ORTHO05D003964 3.5e-29 133.3 308 32.5
MD10G1110300 Malus domestica HOM05D003497 ORTHO05D003964 3.5e-29 133.3 286 34.3
vmacro22257 Vaccinium macrocarpon HOM05D003497 ORTHO05D003964 3.5e-29 133.3 308 35.7
Manes.07G056700 Manihot esculenta HOM05D003497 ORTHO05D003964 4.5e-29 132.9 285 33.3
CSS0043603 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 5.9e-29 132.5 316 33.5
MD10G1110700 Malus domestica HOM05D003497 ORTHO05D003964 5.9e-29 132.5 243 39.5
Sopen01g002980 Solanum pennellii HOM05D003497 ORTHO05D003964 1.0e-28 131.7 327 33.3
CSS0047045 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 1.3e-28 131.3 304 35.9
Solyc01g006990.4 Solanum lycopersicum HOM05D003497 ORTHO05D003964 2.3e-28 130.6 327 33.3
Peaxi162Scf00152g00641 Petunia axillaris HOM05D003497 ORTHO05D003964 2.9e-28 130.2 294 33.0
EL10Ac9g22176 Beta vulgaris HOM05D003497 ORTHO05D003964 3.8e-28 129.8 315 33.7
PGSC0003DMG400021329 Solanum tuberosum HOM05D003497 ORTHO05D003964 3.8e-28 129.8 323 32.5
Migut.B00464 Erythranthe guttata HOM05D003497 ORTHO05D003964 1.1e-27 128.3 304 32.6
PGR142G0099 Punica granatum HOM05D003497 ORTHO05D003964 1.1e-27 128.3 293 33.1
Nitab4.5_0000003g0710 Nicotiana tabacum HOM05D003497 ORTHO05D003964 1.5e-27 127.9 300 34.0
Sc18g0007350 Simmondsia chinensis HOM05D003497 ORTHO05D003964 1.9e-27 127.5 298 32.2
Glyma.10G255600 Glycine max HOM05D003497 ORTHO05D003964 5.6e-27 125.9 294 39.1
RcHm_v2.0_Chr4g0395411 Rosa chinensis HOM05D003497 ORTHO05D003964 5.6e-27 125.9 145 48.3
VMungo0720G1031 Vigna mungo HOM05D003497 ORTHO05D003964 7.3e-27 125.6 288 37.8
Glyma.20G135900 Glycine max HOM05D003497 ORTHO05D003964 9.5e-27 125.2 291 37.5
MD10G1175800 Malus domestica HOM05D003497 ORTHO05D003964 2.8e-26 123.6 258 37.6
Lalb_Chr06g0164971 Lupinus albus HOM05D003497 ORTHO05D003964 3.6e-26 123.2 289 37.7
Cc02_g20070 Coffea canephora HOM05D003497 ORTHO05D003964 4.7e-26 122.9 318 33.3
ECA234G0007 Erigeron canadensis HOM05D003497 ORTHO05D003964 4.7e-26 122.9 311 31.8
Phvul.007G047200 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 4.7e-26 122.9 292 37.3
TAR381G0023 Trochodendron aralioides HOM05D003497 ORTHO05D003964 6.1e-26 122.5 277 33.9
Lj5g0015963 Lotus japonicus HOM05D003497 ORTHO05D003964 1.0e-25 121.7 297 34.3
unitig_744.g24206 Utricularia gibba HOM05D003497 ORTHO05D003964 1.0e-25 121.7 291 32.6
PGR102G1733 Punica granatum HOM05D003497 ORTHO05D003964 1.8e-25 120.9 300 31.3
Nitab4.5_0003918g0020 Nicotiana tabacum HOM05D003497 ORTHO05D003964 4.0e-25 119.8 297 32.3
PSO017G1612 Papaver somniferum HOM05D003497 ORTHO05D003964 4.0e-25 119.8 332 31.0
Medtr7g057330 Medicago truncatula HOM05D003497 ORTHO05D003964 5.2e-25 119.4 255 34.9
arahy.Tifrunner.gnm1.ann1.6MCD86 Arachis hypogaea HOM05D003497 ORTHO05D003964 6.8e-25 119.0 288 34.7
CAN.G911.43 Capsicum annuum HOM05D003497 ORTHO05D003964 6.8e-25 119.0 322 33.5
TPR.G21155 Trifolium pratense HOM05D003497 ORTHO05D003964 8.9e-25 118.6 288 34.0
Phvul.005G029200 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 1.2e-24 118.2 296 35.1
Lsat_1_v5_gn_5_117220 Lactuca sativa HOM05D003497 ORTHO05D003964 2.6e-24 117.1 273 31.9
PSO170G5054 Papaver somniferum HOM05D003497 ORTHO05D003964 2.6e-24 117.1 309 31.7
Ca_11026_v3 Cicer arietinum L. HOM05D003497 ORTHO05D003964 5.8e-24 115.9 299 34.4
Phvul.005G029000 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 5.8e-24 115.9 286 37.1
SalBow6G6060 Salvia bowleyana HOM05D003497 ORTHO05D003964 5.8e-24 115.9 275 34.5
Medtr4g019560 Medicago truncatula HOM05D003497 ORTHO05D003964 7.5e-24 115.5 255 34.5
AL1G37530 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 9.8e-24 115.2 301 30.9
Sp7g01980 Schrenkiella parvula HOM05D003497 ORTHO05D003964 1.7e-23 114.4 298 32.6
Aa31LG7G7660 Aethionema arabicum HOM05D003497 ORTHO05D003964 2.2e-23 114.0 261 31.0
THA.LOC104824678 Tarenaya hassleriana HOM05D003497 ORTHO05D003964 2.2e-23 114.0 278 31.3
AT1G23780 Arabidopsis thaliana HOM05D003497 ORTHO05D003964 2.9e-23 113.6 256 32.4
Carub.0001s2328 Capsella rubella HOM05D003497 ORTHO05D003964 2.9e-23 113.6 294 29.3
CARHR024190 Cardamine hirsuta HOM05D003497 ORTHO05D003964 2.9e-23 113.6 257 32.3
SEGI_36088 Sequoiadendron giganteum HOM05D003497 ORTHO05D003964 8.3e-23 112.1 283 32.5
THA.LOC104822142 Tarenaya hassleriana HOM05D003497 ORTHO05D003964 1.1e-22 111.7 297 30.6
AT1G23770 Arabidopsis thaliana HOM05D003497 ORTHO05D003964 3.2e-22 110.2 256 31.6
PGR102G1148 Punica granatum HOM05D003497 ORTHO05D003964 4.1e-22 109.8 261 33.0
AL1G37520 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 5.4e-22 109.4 263 31.9
Carub.0001s2329 Capsella rubella HOM05D003497 ORTHO05D003964 7.0e-22 109.0 274 32.5
BcaB03g14136 Brassica carinata HOM05D003497 ORTHO05D003964 9.2e-22 108.6 226 31.4
CARHR164040 Cardamine hirsuta HOM05D003497 ORTHO05D003964 9.2e-22 108.6 299 32.4
CDE04G1396 Ceratophyllum demersum HOM05D003497 ORTHO05D003964 1.6e-21 107.8 284 31.3
Phvul.005G037100 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 1.6e-21 107.8 266 37.2
Aqoxy5G00815 Aquilegia oxysepala HOM05D003497 ORTHO05D003964 2.0e-21 107.5 239 31.8
Migut.B00470 Erythranthe guttata HOM05D003497 ORTHO05D003964 2.0e-21 107.5 284 31.3
Cpa.g.c35687 Carica papaya HOM05D003497 ORTHO05D003964 2.7e-21 107.1 239 37.7
MBI16_g32073_MAGBIO Magnolia biondii HOM05D003497 ORTHO05D003964 3.5e-21 106.7 285 29.1
Medtr1g106020 Medicago truncatula HOM05D003497 ORTHO05D003964 3.5e-21 106.7 305 33.1
Psat6g213160 Pisum sativum HOM05D003497 ORTHO05D003964 3.5e-21 106.7 257 34.6
BcaC06g35052 Brassica carinata HOM05D003497 ORTHO05D003964 7.8e-21 105.5 275 29.1
BolC7t42548H Brassica oleracea HOM05D003497 ORTHO05D003964 7.8e-21 105.5 275 29.1
Sp1g21160 Schrenkiella parvula HOM05D003497 ORTHO05D003964 7.8e-21 105.5 306 28.4
Eucgr.H03378 Eucalyptus grandis HOM05D003497 ORTHO05D003964 1.0e-20 105.1 301 29.6
BraA07t29128Z Brassica rapa HOM05D003497 ORTHO05D003964 3.0e-20 103.6 275 29.8
Thhalv10009461m.g Eutrema salsugineum HOM05D003497 ORTHO05D003964 3.0e-20 103.6 309 28.8
C07p20260 Brassica napus HOM05D003497 ORTHO05D003964 3.9e-20 103.2 331 27.2
CARHR164020 Cardamine hirsuta HOM05D003497 ORTHO05D003964 3.9e-20 103.2 262 33.6
ATR0739G052 Amborella trichopoda HOM05D003497 ORTHO05D003964 6.6e-20 102.4 307 29.3
Migut.B00469 Erythranthe guttata HOM05D003497 ORTHO05D003964 6.6e-20 102.4 284 31.3
A07p13790 Brassica napus HOM05D003497 ORTHO05D003964 8.6e-20 102.1 275 29.5
AagrBONN_evm.TU.Sc2ySwM_344.3993 Anthoceros agrestis HOM05D003497 ORTHO05D003964 5.6e-19 99.4 310 30.0
C04p49930 Brassica napus HOM05D003497 ORTHO05D003964 7.3e-19 99.0 290 27.6
COL.COLO4_32483 Corchorus olitorius HOM05D003497 ORTHO05D003964 7.3e-19 99.0 261 33.0
BraA04t17199Z Brassica rapa HOM05D003497 ORTHO05D003964 9.5e-19 98.6 290 27.2
Ciclev10028907m.g Citrus clementina HOM05D003497 ORTHO05D003964 1.6e-18 97.8 291 31.3
MD10G1110400 Malus domestica HOM05D003497 ORTHO05D003964 1.6e-18 97.8 104 50.0
BolC4t26586H Brassica oleracea HOM05D003497 ORTHO05D003964 2.8e-18 97.1 290 27.2
Os03g0232000 Oryza sativa ssp. japonica HOM05D003497 ORTHO05D003964 2.8e-18 97.1 262 32.4
HPP92_007713 Vanilla planifolia HOM05D003497 ORTHO05D003964 2.8e-18 97.1 261 30.7
A04p15640 Brassica napus HOM05D003497 ORTHO05D003964 3.6e-18 96.7 290 26.9
Mapoly0001s0353 Marchantia polymorpha HOM05D003497 ORTHO05D003964 2.3e-17 94.0 287 28.6
Dinv09537 Davidia involucrata HOM05D006380 ORTHO05D008400 1.2e-16 91.7 300 28.7
Potri.015G020600 Populus trichocarpa HOM05D003497 ORTHO05D003964 1.2e-16 91.7 158 34.2
Pp3c15_1340 Physcomitrium patens HOM05D003497 ORTHO05D003964 2.0e-16 90.9 339 28.0
BcaB06g27743 Brassica carinata HOM05D003497 ORTHO05D003964 3.4e-16 90.1 261 27.6
BcaC02g08840 Brassica carinata HOM05D003497 ORTHO05D003964 5.8e-16 89.4 291 27.8
Haze_10296 Corylus avellana HOM05D003497 ORTHO05D003964 5.8e-16 89.4 152 38.8
PSO170G0850 Papaver somniferum HOM05D003497 ORTHO05D003964 5.8e-16 89.4 260 29.6
BcaB03g11953 Brassica carinata HOM05D003497 ORTHO05D003964 2.9e-15 87.0 211 31.3
PSO017G7033 Papaver somniferum HOM05D003497 ORTHO05D003964 3.7e-15 86.7 260 29.2
HanXRQChr10g0290301 Helianthus annuus HOM05D003497 ORTHO05D003964 4.9e-15 86.3 85 44.7
Zm00001eb009480 Zea mays HOM05D003497 ORTHO05D003964 8.3e-15 85.5 114 39.5
Carub.0002s1705 Capsella rubella HOM05D003497 ORTHO05D003964 1.1e-14 85.1 304 28.9
AL2G29670 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 2.4e-14 84.0 223 33.6
HanXRQChr10g0290271 Helianthus annuus HOM05D003497 ORTHO05D003964 2.4e-14 84.0 88 43.2
Haze_10290 Corylus avellana HOM05D003497 ORTHO05D003964 1.6e-13 81.3 262 31.7
HanXRQChr10g0290281 Helianthus annuus HOM05D003497 ORTHO05D003964 2.1e-13 80.9 85 42.4
Cfa004698 Carpinus fangiana HOM05D003497 ORTHO05D003964 3.5e-13 80.1 152 36.8
CBR_g19394 Chara braunii HOM05D003497 ORTHO05D003964 3.0e-12 77.0 116 37.1
Eucgr.I02498 Eucalyptus grandis HOM05D003497 ORTHO05D003964 1.5e-11 74.7 130 36.2
Sed0003270 Sechium edule HOM05D003497 ORTHO05D003964 2.5e-11 73.9 296 26.0
FAN17G0318 Fragaria x ananassa HOM05D003497 ORTHO05D003964 4.3e-11 73.2 129 38.0
PSO017G5705 Papaver somniferum HOM05D003497 ORTHO05D003964 5.6e-11 72.8 111 40.5
AL5G35170 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 9.5e-11 72.0 134 32.1
Migut.B00467 Erythranthe guttata HOM05D003497 ORTHO05D003964 2.8e-10 70.5 101 35.6
AT1G70360 Arabidopsis thaliana HOM05D003497 ORTHO05D003964 8.1e-10 68.9 68 44.1
Sed0009840 Sechium edule HOM05D003497 ORTHO05D003964 1.1e-09 68.6 83 43.4
Sed0016990 Sechium edule HOM05D003497 ORTHO05D003964 1.1e-09 68.6 138 30.4
BcaC02g08839 Brassica carinata HOM05D003497 ORTHO05D003964 1.4e-09 68.2 174 29.3
Sed0000294 Sechium edule HOM05D003497 ORTHO05D003964 4.0e-09 66.6 87 40.2
PSO170G1569 Papaver somniferum HOM05D003497 ORTHO05D003964 5.2e-09 66.2 77 41.6
PGR119G2181 Punica granatum HOM05D003497 ORTHO05D003964 6.8e-09 65.9 128 32.8
Actinidia02442 Actinidia chinensis HOM05D003497 ORTHO05D003964 1.3e-07 61.6 96 34.4
SMO270G0122 Selaginella moellendorffii HOM05D003497 ORTHO05D003964 1.7e-07 61.2 62 43.5
Potri.017G134500 Populus trichocarpa HOM05D003497 ORTHO05D003964 2.9e-07 60.5 106 33.0
Cre17.g738800 Chlamydomonas reinhardtii HOM05D003497 ORTHO05D003964 8.3e-07 58.9 113 29.2


User provided reference genes

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