Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G2819 Fragaria x ananassa HOM05D003479 ORTHO05D019150 3.3e-52 208.0 98 100.0
FvH4_5g36090 Fragaria vesca HOM05D003479 ORTHO05D019150 3.4e-49 198.0 98 95.9
FAN08G3605 Fragaria x ananassa HOM05D003479 ORTHO05D019150 1.1e-47 193.0 98 93.9
FAN23G1814 Fragaria x ananassa HOM05D003479 ORTHO05D004659 5.2e-21 104.4 71 77.5
FAN23G2105 Fragaria x ananassa HOM05D003479 ORTHO05D004659 5.2e-21 104.4 71 77.5
FAN28G1829 Fragaria x ananassa HOM05D003479 ORTHO05D004659 2.6e-20 102.1 71 76.1
FvH4_1g26030 Fragaria vesca HOM05D003479 ORTHO05D004659 5.3e-18 94.4 86 64.0
FAN19G1496 Fragaria x ananassa HOM05D003479 ORTHO05D004659 5.3e-18 94.4 86 64.0
FAN20G0117 Fragaria x ananassa HOM05D003479 ORTHO05D019150 5.3e-18 94.4 55 87.3
FAN07G2139 Fragaria x ananassa HOM05D003479 ORTHO05D019150 7.0e-18 94.0 63 81.0
FAN26G2262 Fragaria x ananassa HOM05D003479 ORTHO05D004659 2.6e-17 92.0 86 62.8
FAN21G3631 Fragaria x ananassa HOM05D003479 ORTHO05D019150 3.5e-17 91.7 63 77.8
CSS0034529 Camellia sinensis var. sinensis HOM05D003479 ORTHO05D004659 5.9e-17 90.9 71 69.0
RcHm_v2.0_Chr3g0485491 Rosa chinensis HOM05D003479 ORTHO05D004659 5.9e-17 90.9 86 62.8
Prupe.3G000300 Prunus persica HOM05D003479 ORTHO05D004659 1.3e-16 89.7 89 60.7
FAN07G2883 Fragaria x ananassa HOM05D003479 ORTHO05D019150 2.2e-16 89.0 60 76.7
Atru.chr5.824 Acer truncatum HOM05D003479 ORTHO05D004659 6.5e-16 87.4 86 57.0
MD17G1285800 Malus domestica HOM05D003479 ORTHO05D004659 6.5e-16 87.4 89 59.6
Dinv12068 Davidia involucrata HOM05D003479 ORTHO05D004659 1.1e-15 86.7 86 60.5
Lj5g0020342 Lotus japonicus HOM05D003479 ORTHO05D004659 3.2e-15 85.1 86 57.0
Rhsim01G0001400 Rhododendron simsii HOM05D003479 ORTHO05D004659 7.2e-15 84.0 86 59.3
GSVIVG01028271001 Vitis vinifera HOM05D003479 ORTHO05D004659 7.2e-15 84.0 86 58.1
arahy.Tifrunner.gnm1.ann1.37N44H Arachis hypogaea HOM05D003479 ORTHO05D004659 9.4e-15 83.6 86 55.8
arahy.Tifrunner.gnm1.ann1.RIE5PZ Arachis hypogaea HOM05D003479 ORTHO05D004659 9.4e-15 83.6 86 55.8
Thecc.01G328500 Theobroma cacao HOM05D003479 ORTHO05D004659 9.4e-15 83.6 86 55.8
Manes.01G236800 Manihot esculenta HOM05D003479 ORTHO05D004659 2.7e-14 82.0 85 55.3
Glyma.03G226200 Glycine max HOM05D003479 ORTHO05D004659 3.6e-14 81.6 86 52.3
Lju2566C1G2 Lonicera japonica HOM05D003479 ORTHO05D004659 6.1e-14 80.9 86 55.8
QL09p037594 Quercus lobata HOM05D003479 ORTHO05D004659 6.1e-14 80.9 86 54.7
Gohir.A08G122400 Gossypium hirsutum HOM05D003479 ORTHO05D004659 8.0e-14 80.5 85 55.3
Medtr1g085300 Medicago truncatula HOM05D003479 ORTHO05D004659 8.0e-14 80.5 86 53.5
Actinidia06417 Actinidia chinensis HOM05D003479 ORTHO05D004659 1.0e-13 80.1 89 53.9
Ca_09257_v3 Cicer arietinum L. HOM05D003479 ORTHO05D004659 1.0e-13 80.1 85 54.1
Phvul.001G220000 Phaseolus vulgaris HOM05D003479 ORTHO05D004659 1.0e-13 80.1 86 52.3
Gorai.004G148300 Gossypium raimondii HOM05D003479 ORTHO05D004659 1.4e-13 79.7 85 55.3
TPR.G3092 Trifolium pratense HOM05D003479 ORTHO05D004659 1.4e-13 79.7 86 53.5
CiPaw.07G128000 Carya illinoinensis HOM05D003479 ORTHO05D004659 1.8e-13 79.3 86 55.8
Psat6g157360 Pisum sativum HOM05D003479 ORTHO05D004659 1.8e-13 79.3 86 53.5
Ca_10221_v3 Cicer arietinum L. HOM05D003479 ORTHO05D004659 3.0e-13 78.6 86 52.3
Gohir.D08G143700 Gossypium hirsutum HOM05D003479 ORTHO05D004659 3.0e-13 78.6 85 55.3
Lalb_Chr04g0260231 Lupinus albus HOM05D003479 ORTHO05D004659 3.0e-13 78.6 86 53.5
VMungo1383G0820 Vigna mungo HOM05D003479 ORTHO05D004659 3.0e-13 78.6 73 56.2
Gohir.D11G107800 Gossypium hirsutum HOM05D003479 ORTHO05D004659 4.0e-13 78.2 86 53.5
Gorai.007G115700 Gossypium raimondii HOM05D003479 ORTHO05D004659 4.0e-13 78.2 86 53.5
MD09G1291900 Malus domestica HOM05D003479 ORTHO05D004659 4.0e-13 78.2 70 61.4
TWI14G0833 Tripterygium wilfordii HOM05D003479 ORTHO05D004659 4.0e-13 78.2 85 52.9
Glyma.19G223200 Glycine max HOM05D003479 ORTHO05D004659 5.2e-13 77.8 85 52.9
Glyma.20G089300 Glycine max HOM05D003479 ORTHO05D004659 5.2e-13 77.8 86 53.5
Medtr7g111030 Medicago truncatula HOM05D003479 ORTHO05D004659 5.2e-13 77.8 85 52.9
Cfa004931 Carpinus fangiana HOM05D003479 ORTHO05D004659 6.8e-13 77.4 89 55.1
CsaV3_6G000310 Cucumis sativus L. HOM05D003479 ORTHO05D004659 6.8e-13 77.4 86 54.7
Sed0003575 Sechium edule HOM05D003479 ORTHO05D019150 8.8e-13 77.0 85 54.1
CANSAT25G3435 Cannabis sativa HOM05D003479 ORTHO05D004659 1.2e-12 76.6 86 55.8
Ciclev10018541m.g Citrus clementina HOM05D003479 ORTHO05D004659 1.2e-12 76.6 86 51.2
Duzib138G1436 Durio zibethinus HOM05D003479 ORTHO05D004659 1.2e-12 76.6 86 53.5
Eucgr.K00763 Eucalyptus grandis HOM05D003479 ORTHO05D004659 1.2e-12 76.6 86 52.3
Nitab4.5_0002103g0090 Nicotiana tabacum HOM05D003479 ORTHO05D004659 1.2e-12 76.6 85 52.9
CiPaw.08G080000 Carya illinoinensis HOM05D003479 ORTHO05D004659 2.6e-12 75.5 70 60.0
Potri.002G184400 Populus trichocarpa HOM05D003479 ORTHO05D004659 2.6e-12 75.5 86 52.3
DCAR_018236 Daucus carota HOM05D003479 ORTHO05D004659 3.4e-12 75.1 87 50.6
Psat3g015760 Pisum sativum HOM05D003479 ORTHO05D004659 3.4e-12 75.1 86 51.2
Potri.014G109900 Populus trichocarpa HOM05D003479 ORTHO05D004659 3.4e-12 75.1 86 54.7
Gohir.A11G103400 Gossypium hirsutum HOM05D003479 ORTHO05D004659 4.4e-12 74.7 86 52.3
Sabra14G0081100 Salix brachista HOM05D003479 ORTHO05D004659 4.4e-12 74.7 86 53.5
Cc01_g21710 Coffea canephora HOM05D003479 ORTHO05D004659 5.7e-12 74.3 86 52.3
MELO3C021223.2 Cucumis melo HOM05D003479 ORTHO05D004659 5.7e-12 74.3 86 52.3
Nitab4.5_0001628g0060 Nicotiana tabacum HOM05D003479 ORTHO05D004659 5.7e-12 74.3 70 58.6
Gorai.004G044600 Gossypium raimondii HOM05D003479 ORTHO05D004659 7.5e-12 73.9 86 51.2
Lsat_1_v5_gn_9_7140 Lactuca sativa HOM05D003479 ORTHO05D004659 9.8e-12 73.6 85 51.8
Lalb_Chr18g0046291 Lupinus albus HOM05D003479 ORTHO05D004659 1.3e-11 73.2 86 50.0
Peaxi162Scf00309g00510 Petunia axillaris HOM05D003479 ORTHO05D004659 1.3e-11 73.2 70 57.1
Solyc01g068590.4 Solanum lycopersicum HOM05D003479 ORTHO05D004659 1.7e-11 72.8 70 55.7
Sopen01g030540 Solanum pennellii HOM05D003479 ORTHO05D004659 1.7e-11 72.8 70 55.7
Eucgr.K00546 Eucalyptus grandis HOM05D003479 ORTHO05D004659 2.2e-11 72.4 85 50.6
Gohir.A08G035200 Gossypium hirsutum HOM05D003479 ORTHO05D004659 2.2e-11 72.4 86 50.0
Gohir.D08G045832 Gossypium hirsutum HOM05D003479 ORTHO05D004659 2.2e-11 72.4 70 55.7
Oeu052594.2 Olea europaea HOM05D003479 ORTHO05D004659 2.2e-11 72.4 89 50.6
Haze_05171 Corylus avellana HOM05D003479 ORTHO05D004659 2.8e-11 72.0 89 52.8
Cpa.g.sc57.54 Carica papaya HOM05D003479 ORTHO05D004659 3.7e-11 71.6 86 50.0
MBI18_g03887_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 4.8e-11 71.2 85 50.6
ECA247G3194 Erigeron canadensis HOM05D003479 ORTHO05D004659 8.3e-11 70.5 84 51.2
THA.LOC104817410 Tarenaya hassleriana HOM05D003479 ORTHO05D004659 1.4e-10 69.7 86 47.7
TAR636G1704 Trochodendron aralioides HOM05D003479 ORTHO05D004659 1.4e-10 69.7 84 52.4
Aa31LG10G15990 Aethionema arabicum HOM05D003479 ORTHO05D004659 1.8e-10 69.3 86 47.7
HanXRQChr15g0464511 Helianthus annuus HOM05D003479 ORTHO05D004659 1.8e-10 69.3 85 49.4
Sc05g0000020 Simmondsia chinensis HOM05D003479 ORTHO05D004659 1.8e-10 69.3 85 49.4
unitig_578.g16646 Utricularia gibba HOM05D003479 ORTHO05D004659 5.4e-10 67.8 86 51.2
HPP92_010564 Vanilla planifolia HOM05D003479 ORTHO05D004659 5.4e-10 67.8 85 48.2
Carub.0005s2876 Capsella rubella HOM05D003479 ORTHO05D004659 7.0e-10 67.4 86 46.5
Migut.D00003 Erythranthe guttata HOM05D003479 ORTHO05D004659 7.0e-10 67.4 86 48.8
THA.LOC104802111 Tarenaya hassleriana HOM05D003479 ORTHO05D004659 7.0e-10 67.4 86 45.3
Thhalv10005753m.g Eutrema salsugineum HOM05D003479 ORTHO05D004659 9.1e-10 67.0 86 45.3
BcaC07g40697 Brassica carinata HOM05D003479 ORTHO05D004659 1.2e-09 66.6 86 45.3
AL5G44630 Arabidopsis lyrata HOM05D003479 ORTHO05D004659 1.6e-09 66.2 86 46.5
CARHR172360 Cardamine hirsuta HOM05D003479 ORTHO05D004659 1.6e-09 66.2 86 46.5
Sp5g01350 Schrenkiella parvula HOM05D003479 ORTHO05D004659 1.6e-09 66.2 86 45.3
Nn4g25261 Nelumbo nucifera HOM05D003479 ORTHO05D004659 2.0e-09 65.9 70 50.0
Aqoxy5G02886 Aquilegia oxysepala HOM05D003479 ORTHO05D004659 2.7e-09 65.5 85 48.2
A09p54080 Brassica napus HOM05D003479 ORTHO05D004659 7.7e-09 63.9 87 43.7
C08p36970 Brassica napus HOM05D003479 ORTHO05D004659 7.7e-09 63.9 87 43.7
BolC8t51274H Brassica oleracea HOM05D003479 ORTHO05D004659 7.7e-09 63.9 87 43.7
BraA09t40821Z Brassica rapa HOM05D003479 ORTHO05D004659 7.7e-09 63.9 87 43.7
SGA_v2.0_scaffold80G25672 Striga asiatica HOM05D003479 ORTHO05D004659 7.7e-09 63.9 86 47.7
PSO170G1939 Papaver somniferum HOM05D003479 ORTHO05D004659 1.3e-08 63.2 86 46.5
PSO357G0518 Papaver somniferum HOM05D003479 ORTHO05D004659 1.3e-08 63.2 86 46.5
AT3G62010 Arabidopsis thaliana HOM05D003479 ORTHO05D004659 2.2e-08 62.4 86 45.3
AUR62011690 Chenopodium quinoa HOM05D003479 ORTHO05D004659 2.9e-08 62.0 70 47.1
AUR62024549 Chenopodium quinoa HOM05D003479 ORTHO05D004659 2.9e-08 62.0 70 47.1
ATR0693G109 Amborella trichopoda HOM05D003479 ORTHO05D004659 5.0e-08 61.2 86 43.0
CDE11G0667 Ceratophyllum demersum HOM05D003479 ORTHO05D004659 5.0e-08 61.2 69 49.3
EL10As5g23623 Beta vulgaris HOM05D003479 ORTHO05D004659 2.5e-07 58.9 70 45.7
Os03g0586700 Oryza sativa ssp. japonica HOM05D003479 ORTHO05D004659 3.2e-07 58.5 87 43.7
vmacro02352 Vaccinium macrocarpon HOM05D003479 ORTHO05D004659 5.5e-07 57.8 128 35.2
Ah.02g112690 Amaranthus hybridus HOM05D003479 ORTHO05D004659 2.1e-06 55.8 89 41.6
AagrBONN_evm.TU.Sc2ySwM_344.258 Anthoceros agrestis HOM05D003479 ORTHO05D004659 6.1e-06 54.3 69 44.9


User provided reference genes

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