Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g22350 Fragaria vesca HOM05D003913 ORTHO05D004803 1.8e-117 426.8 386 100.0
FAN18G2025 Fragaria x ananassa HOM05D003913 ORTHO05D004803 1.8e-117 426.8 386 100.0
FAN18G2798 Fragaria x ananassa HOM05D003913 ORTHO05D004803 1.8e-117 426.8 386 100.0
FAN08G0696 Fragaria x ananassa HOM05D003913 ORTHO05D004803 9.2e-114 414.5 387 98.4
RcHm_v2.0_Chr7g0210071 Rosa chinensis HOM05D003913 ORTHO05D004803 9.5e-111 404.4 386 96.6
FAN04G3257 Fragaria x ananassa HOM05D003913 ORTHO05D004803 7.8e-105 384.8 425 81.9
Prupe.8G049100 Prunus persica HOM05D003913 ORTHO05D004803 2.2e-91 340.1 387 87.1
MD07G1041000 Malus domestica HOM05D003913 ORTHO05D004803 1.5e-87 327.4 388 86.1
PGR031G2719 Punica granatum HOM05D003913 ORTHO05D004803 1.9e-82 310.5 388 82.2
Dinv13071 Davidia involucrata HOM05D003913 ORTHO05D004803 2.4e-82 310.1 382 60.7
MD02G1272000 Malus domestica HOM05D003913 ORTHO05D004803 1.2e-81 307.8 388 83.5
Potri.019G087200 Populus trichocarpa HOM05D003913 ORTHO05D004803 7.8e-81 305.1 388 80.2
Sed0012824 Sechium edule HOM05D003913 ORTHO05D004803 9.6e-79 298.1 384 74.2
Dinv44716 Davidia involucrata HOM05D003913 ORTHO05D004803 1.3e-78 297.7 382 61.8
ClCG08G002560 Citrullus lanatus HOM05D003913 ORTHO05D004803 3.6e-78 296.2 384 82.0
Manes.02G188000 Manihot esculenta HOM05D003913 ORTHO05D004803 3.6e-78 296.2 391 79.3
CsaV3_6G002750 Cucumis sativus L. HOM05D003913 ORTHO05D004803 1.1e-77 294.7 384 81.8
MELO3C024997.2 Cucumis melo HOM05D003913 ORTHO05D004803 1.8e-77 293.9 384 81.8
Ciclev10008663m.g Citrus clementina HOM05D003913 ORTHO05D004803 4.0e-77 292.7 383 80.7
RcHm_v2.0_Chr6g0272901 Rosa chinensis HOM05D003913 ORTHO05D004803 9.0e-77 291.6 388 82.0
Lalb_Chr20g0121511 Lupinus albus HOM05D003913 ORTHO05D004803 1.1e-74 284.6 378 53.4
Lj5g0008809 Lotus japonicus HOM05D003913 ORTHO05D004803 5.4e-74 282.3 389 48.3
FvH4_2g12470 Fragaria vesca HOM05D003913 ORTHO05D004803 1.6e-73 280.8 387 80.9
Sed0004416 Sechium edule HOM05D003913 ORTHO05D004803 1.6e-73 280.8 394 79.2
FAN24G0738 Fragaria x ananassa HOM05D003913 ORTHO05D004803 5.1e-72 275.8 387 80.4
TWI12G0147 Tripterygium wilfordii HOM05D003913 ORTHO05D004803 5.1e-72 275.8 392 77.3
Actinidia29569 Actinidia chinensis HOM05D003913 ORTHO05D004803 1.1e-71 274.6 385 79.5
Aqoxy1G00206 Aquilegia oxysepala HOM05D003913 ORTHO05D004803 5.3e-69 265.8 380 75.3
Atru.chr13.1880 Acer truncatum HOM05D003913 ORTHO05D004803 1.2e-68 264.6 391 76.5
Lj2C196T3 Lonicera japonica HOM05D003913 ORTHO05D004803 1.3e-67 261.2 387 54.5
PSO541G3150 Papaver somniferum HOM05D003913 ORTHO05D004803 1.7e-67 260.8 357 83.8
Gorai.006G187200 Gossypium raimondii HOM05D003913 ORTHO05D004803 2.9e-67 260.0 381 49.9
Phvul.011G104600 Phaseolus vulgaris HOM05D003913 ORTHO05D004803 2.9e-67 260.0 388 63.1
Sabra13G0099000 Salix brachista HOM05D003913 ORTHO05D004803 4.9e-67 259.2 386 74.9
CANSAT25G1043 Cannabis sativa HOM05D003913 ORTHO05D004803 8.4e-67 258.5 393 75.8
Glyma.20G173100 Glycine max HOM05D003913 ORTHO05D004803 1.1e-66 258.1 374 57.8
Gohir.D09G165400 Gossypium hirsutum HOM05D003913 ORTHO05D004803 3.2e-66 256.5 381 49.3
VMungo1080G1176 Vigna mungo HOM05D003913 ORTHO05D004803 1.2e-65 254.6 388 59.0
BolC6t38638H Brassica oleracea HOM05D003913 ORTHO05D004803 2.1e-65 253.8 409 54.5
BraA07t30691Z Brassica rapa HOM05D003913 ORTHO05D004803 2.1e-65 253.8 409 62.8
Potri.013G116900 Populus trichocarpa HOM05D003913 ORTHO05D004803 2.7e-65 253.4 396 66.4
CARHR290910 Cardamine hirsuta HOM05D003913 ORTHO05D004803 4.6e-65 252.7 387 65.9
C06p35320 Brassica napus HOM05D003913 ORTHO05D004803 3.0e-64 250.0 423 57.7
CSS0047372 Camellia sinensis var. sinensis HOM05D003913 ORTHO05D004803 3.0e-64 250.0 388 75.8
A07p30560 Brassica napus HOM05D003913 ORTHO05D004803 3.9e-64 249.6 423 48.9
ECA236G4407 Erigeron canadensis HOM05D003913 ORTHO05D004803 3.9e-64 249.6 390 46.4
Lsat_1_v5_gn_9_43060 Lactuca sativa HOM05D003913 ORTHO05D004803 6.7e-64 248.8 383 74.4
arahy.Tifrunner.gnm1.ann1.0Z7T57 Arachis hypogaea HOM05D003913 ORTHO05D004803 2.5e-63 246.9 384 44.8
Lj4A109T49 Lonicera japonica HOM05D003913 ORTHO05D004803 3.3e-63 246.5 383 75.5
Oeu053831.1 Olea europaea HOM05D003913 ORTHO05D004803 5.6e-63 245.7 393 67.4
TWI75G1061 Tripterygium wilfordii HOM05D003913 ORTHO05D004803 7.4e-63 245.4 392 73.0
TAR625G1217 Trochodendron aralioides HOM05D003913 ORTHO05D004803 7.4e-63 245.4 383 74.9
arahy.Tifrunner.gnm1.ann1.F1WV5B Arachis hypogaea HOM05D003913 ORTHO05D004803 9.6e-63 245.0 384 44.5
Nitab4.5_0000366g0190 Nicotiana tabacum HOM05D003913 ORTHO05D004803 9.6e-63 245.0 388 73.5
A07p37990 Brassica napus HOM05D003913 ORTHO05D004803 1.4e-61 241.1 394 62.4
LjContig00222g0022410 Lotus japonicus HOM05D003913 ORTHO05D004803 2.4e-61 240.4 390 43.6
Nitab4.5_0002890g0020 Nicotiana tabacum HOM05D003913 ORTHO05D004803 5.3e-61 239.2 345 53.0
Rhsim04G0038100 Rhododendron simsii HOM05D003913 ORTHO05D004803 1.5e-60 237.7 405 72.3
Nn3g16733 Nelumbo nucifera HOM05D003913 ORTHO05D004803 2.0e-60 237.3 383 72.1
BcaB03g15621 Brassica carinata HOM05D003913 ORTHO05D004803 3.4e-60 236.5 389 64.5
BolC6t39643H Brassica oleracea HOM05D003913 ORTHO05D004803 4.5e-60 236.1 394 64.5
BcaC08g46615 Brassica carinata HOM05D003913 ORTHO05D004803 3.8e-59 233.0 394 62.7
Thecc.08G198300 Theobroma cacao HOM05D003913 ORTHO05D004803 6.5e-59 232.3 386 47.4
CiPaw.15G007000 Carya illinoinensis HOM05D003913 ORTHO05D004803 1.1e-58 231.5 398 65.1
GSVIVG01015205001 Vitis vinifera HOM05D003913 ORTHO05D004803 1.9e-58 230.7 391 55.5
AL2G31420 Arabidopsis lyrata HOM05D003913 ORTHO05D004803 3.2e-58 229.9 386 64.0
SalBow7G2889 Salvia bowleyana HOM05D003913 ORTHO05D004803 7.1e-58 228.8 397 59.7
Sp5g26870 Schrenkiella parvula HOM05D003913 ORTHO05D004803 7.1e-58 228.8 397 62.7
SpUn0020_0100 Schrenkiella parvula HOM05D003913 ORTHO05D004803 7.1e-58 228.8 397 62.7
C06p45910 Brassica napus HOM05D003913 ORTHO05D004803 2.1e-57 227.3 381 64.3
ECA232G2276 Erigeron canadensis HOM05D003913 ORTHO05D004803 2.1e-57 227.3 378 71.7
BraA07t31364Z Brassica rapa HOM05D003913 ORTHO05D004803 6.0e-57 225.7 384 63.8
MSTRG.9615 Avicennia marina HOM05D003913 ORTHO05D004803 1.8e-56 224.2 389 68.9
Gorai.010G129100 Gossypium raimondii HOM05D003913 ORTHO05D004803 3.0e-56 223.4 388 45.1
HanXRQChr11g0320411 Helianthus annuus HOM05D003913 ORTHO05D004803 3.0e-56 223.4 382 72.3
PSO675G8150 Papaver somniferum HOM05D003913 ORTHO05D004803 3.9e-56 223.0 382 75.1
PGSC0003DMG400028735 Solanum tuberosum HOM05D003913 ORTHO05D004803 3.9e-56 223.0 388 70.1
Aa31LG4G8790 Aethionema arabicum HOM05D003913 ORTHO05D004803 1.1e-55 221.5 407 61.2
Gohir.D06G113300 Gossypium hirsutum HOM05D003913 ORTHO05D004803 1.1e-55 221.5 388 44.8
Sopen07g004790 Solanum pennellii HOM05D003913 ORTHO05D004803 1.1e-55 221.5 388 70.6
Solyc07g008860.3 Solanum lycopersicum HOM05D003913 ORTHO05D004803 5.7e-55 219.2 388 70.1
Thhalv10018505m.g Eutrema salsugineum HOM05D003913 ORTHO05D004803 7.4e-55 218.8 384 63.3
Gohir.A09G169700 Gossypium hirsutum HOM05D003913 ORTHO05D004803 7.4e-55 218.8 381 45.4
Gohir.A06G109200 Gossypium hirsutum HOM05D003913 ORTHO05D004803 2.8e-54 216.9 360 46.4
BcaC08g45753 Brassica carinata HOM05D003913 ORTHO05D004803 1.4e-53 214.5 399 60.9
Cc11_g02860 Coffea canephora HOM05D003913 ORTHO05D004803 1.8e-53 214.2 387 64.6
DCAR_000644 Daucus carota HOM05D003913 ORTHO05D004803 4.1e-53 213.0 381 45.7
Medtr1g097140 Medicago truncatula HOM05D003913 ORTHO05D004803 4.1e-53 213.0 379 36.9
Psat6g188560 Pisum sativum HOM05D000168 ORTHO05D004803 5.3e-53 212.6 368 36.4
SGA_v2.0_scaffold114G31919 Striga asiatica HOM05D003913 ORTHO05D004803 6.9e-53 212.2 340 73.2
CDE08G0059 Ceratophyllum demersum HOM05D003913 ORTHO05D004803 1.5e-52 211.1 384 61.7
Ah.03g146560 Amaranthus hybridus HOM05D003913 ORTHO05D004803 2.6e-52 210.3 382 72.0
THA.LOC104826775 Tarenaya hassleriana HOM05D003913 ORTHO05D004803 3.4e-52 209.9 381 62.2
Aa31LG7G6630 Aethionema arabicum HOM05D003913 ORTHO05D004803 1.0e-51 208.4 378 36.2
MBI10_g42737_MAGBIO Magnolia biondii HOM05D003913 ORTHO05D004803 1.0e-51 208.4 342 78.7
Sabra19G0097800 Salix brachista HOM05D003913 ORTHO05D004803 3.8e-51 206.5 392 70.2
Ca_30575_v3 Cicer arietinum L. HOM05D003913 ORTHO05D004803 5.5e-50 202.6 394 34.5
Hund19608 Selenicereus undatus HOM05D003913 ORTHO05D004803 5.5e-50 202.6 435 58.9
Sabra19G0101300 Salix brachista HOM05D003913 ORTHO05D004803 9.4e-50 201.8 392 68.1
arahy.Tifrunner.gnm1.ann1.A7TGXU Arachis hypogaea HOM05D003913 ORTHO05D004803 2.1e-49 200.7 408 38.2
AUR62017935 Chenopodium quinoa HOM05D003913 ORTHO05D004803 7.9e-49 198.7 394 60.7
Duzib211G0424 Durio zibethinus HOM05D003913 ORTHO05D004803 7.9e-49 198.7 395 45.1
COL.COLO4_13734 Corchorus olitorius HOM05D003913 ORTHO05D004803 1.0e-48 198.4 332 51.2
GSVIVG01001592001 Vitis vinifera HOM05D003913 ORTHO05D004803 1.4e-48 198.0 391 66.8
AT1G71840 Arabidopsis thaliana HOM05D003913 ORTHO05D004803 3.9e-48 196.4 386 60.1
Cfa018220 Carpinus fangiana HOM05D003913 ORTHO05D004803 1.1e-47 194.9 340 74.4
Rhsim06G0087400 Rhododendron simsii HOM05D003913 ORTHO05D004803 2.5e-47 193.7 478 59.4
VMungo0720G0336 Vigna mungo HOM05D003913 ORTHO05D004803 1.7e-46 191.0 390 54.4
EL10Ac6g15251 Beta vulgaris HOM05D003913 ORTHO05D004803 2.8e-46 190.3 394 67.3
FAN20G2057 Fragaria x ananassa HOM05D003913 ORTHO05D004803 4.8e-46 189.5 312 56.4
Zm00001eb362180 Zea mays HOM05D003913 ORTHO05D004803 2.4e-45 187.2 385 49.9
Actinidia33168 Actinidia chinensis HOM05D003898 ORTHO05D004642 9.1e-45 185.3 270 50.4
Oeu053830.1 Olea europaea HOM05D003913 ORTHO05D004803 9.1e-45 185.3 393 60.3
ATR0001G003 Amborella trichopoda HOM05D003913 ORTHO05D004803 2.6e-44 183.7 343 43.1
Nitab4.5_0002890g0010 Nicotiana tabacum HOM05D003913 ORTHO05D004803 3.4e-44 183.3 325 44.3
Hma1.2p1_0276F.1_g111300 Hydrangea macrophylla HOM05D003913 ORTHO05D004803 4.5e-44 183.0 308 74.4
Sc16g0003970 Simmondsia chinensis HOM05D003913 ORTHO05D004803 6.5e-43 179.1 337 71.5
HPP92_008098 Vanilla planifolia HOM05D003913 ORTHO05D004803 6.5e-43 179.1 379 62.3
EL10Ac5g10958 Beta vulgaris HOM05D003913 ORTHO05D004803 8.5e-43 178.7 389 32.6
Os03g0685600 Oryza sativa ssp. japonica HOM05D003913 ORTHO05D004803 1.1e-42 178.3 380 57.4
Zm00001eb139680 Zea mays HOM05D003913 ORTHO05D004803 9.4e-42 175.3 384 59.4
Pp3c14_20020 Physcomitrium patens HOM05D003913 ORTHO05D004803 2.1e-41 174.1 411 62.0
Migut.J01123 Erythranthe guttata HOM05D003913 ORTHO05D004803 2.3e-40 170.6 445 31.2
Peaxi162Scf01838g00003 Petunia axillaris HOM05D000173 ORTHO05D000316 2.3e-40 170.6 280 38.9
vmacro21210 Vaccinium macrocarpon HOM05D003913 ORTHO05D004803 2.3e-40 170.6 405 58.3
Migut.I00088 Erythranthe guttata HOM05D003913 ORTHO05D004803 5.1e-40 169.5 400 45.2
CARHR124080 Cardamine hirsuta HOM05D003913 ORTHO05D004803 6.3e-38 162.5 362 33.1
Haze_17883 Corylus avellana HOM05D003913 ORTHO05D004803 2.4e-37 160.6 484 57.9
DCAR_004603 Daucus carota HOM05D000366 ORTHO05D000437 1.2e-36 158.3 104 71.2
Carub.0002s1860 Capsella rubella HOM05D003913 ORTHO05D004803 1.5e-36 157.9 386 56.5
Cpa.g.sc2399.1 Carica papaya HOM05D003913 ORTHO05D004803 7.7e-36 155.6 278 77.7
TAR381G0993 Trochodendron aralioides HOM05D003913 ORTHO05D004803 7.7e-36 155.6 278 74.5
Eucgr.E02330 Eucalyptus grandis HOM05D003913 ORTHO05D004803 1.0e-35 155.2 287 70.4
TPR.G30584 Trifolium pratense HOM05D003913 ORTHO05D004803 1.0e-35 155.2 391 30.7
Glyma.09G057500 Glycine max HOM05D003913 ORTHO05D004803 2.2e-35 154.1 157 50.3
AUR62003626 Chenopodium quinoa HOM05D003913 ORTHO05D004803 3.8e-35 153.3 109 64.2
CANSAT11G1897 Cannabis sativa HOM05D003913 ORTHO05D004803 5.0e-35 152.9 110 70.9
Psat6g019720 Pisum sativum HOM05D003913 ORTHO05D004803 2.5e-34 150.6 263 35.7
COL.COLO4_03395 Corchorus olitorius HOM05D003913 ORTHO05D004803 5.5e-34 149.4 109 67.9
SEGI_39165 Sequoiadendron giganteum HOM05D003913 ORTHO05D004803 9.4e-34 148.7 384 54.9
Mapoly0155s0005 Marchantia polymorpha HOM05D003913 ORTHO05D004803 2.1e-33 147.5 397 37.3
QL02p034830 Quercus lobata HOM05D003913 ORTHO05D004803 3.6e-33 146.7 104 67.3
MBI10_g41322_MAGBIO Magnolia biondii HOM05D003913 ORTHO05D004803 1.4e-32 144.8 106 64.2
unitig_747.g21315 Utricularia gibba HOM05D003913 ORTHO05D004803 1.8e-32 144.4 378 31.2
AUR62024845 Chenopodium quinoa HOM05D003913 ORTHO05D004803 2.3e-32 144.1 373 29.5
Migut.D01748 Erythranthe guttata HOM05D003913 ORTHO05D004803 8.8e-32 142.1 341 63.9
Glyma.10G218600 Glycine max HOM05D003913 ORTHO05D004803 2.6e-31 140.6 104 65.4
AagrBONN_evm.TU.Sc2ySwM_368.376 Anthoceros agrestis HOM05D003913 ORTHO05D004803 2.2e-30 137.5 406 55.4
EL10Ac9g21859 Beta vulgaris HOM05D003913 ORTHO05D004803 1.8e-29 134.4 328 29.6
Hma1.2p1_0276F.1_g111310 Hydrangea macrophylla HOM05D003913 ORTHO05D004803 5.5e-26 122.9 106 59.4
Thecc.09G236800 Theobroma cacao HOM05D003913 ORTHO05D004803 2.1e-25 120.9 375 29.9
Glyma.10G218500 Glycine max HOM05D003913 ORTHO05D004803 5.2e-24 116.3 119 50.4
AUR62001664 Chenopodium quinoa HOM05D003913 ORTHO05D004803 2.0e-23 114.4 341 27.0
SMO347G0114 Selaginella moellendorffii HOM05D003913 ORTHO05D004803 7.5e-23 112.5 110 51.8
SMO367G0065 Selaginella moellendorffii HOM05D003913 ORTHO05D004803 2.8e-22 110.5 346 26.3
Psat6g021120 Pisum sativum HOM05D003913 ORTHO05D004803 1.2e-20 105.1 120 47.5
Cre12.g487200 Chlamydomonas reinhardtii HOM05D003913 ORTHO05D004803 2.0e-20 104.4 401 27.4
SMO343G0013 Selaginella moellendorffii HOM05D003913 ORTHO05D004803 4.5e-20 103.2 152 37.5
PSO455G0073 Papaver somniferum HOM05D003913 ORTHO05D004803 5.9e-20 102.8 60 78.3
Lj4C56G20 Lonicera japonica HOM05D003913 ORTHO05D004803 1.1e-18 98.6 213 32.9
BolC6t38649H Brassica oleracea HOM05D003913 ORTHO05D004803 2.3e-16 90.9 147 38.1
BraA02t06789Z Brassica rapa HOM05D003913 ORTHO05D004803 2.2e-14 84.3 50 78.0
SHI13909 Sapria himalayana HOM05D003913 ORTHO05D004803 4.8e-14 83.2 94 47.9
A02p17440 Brassica napus HOM05D003913 ORTHO05D004803 8.3e-14 82.4 50 76.0
MCO10G384 Micromonas commoda HOM05D003913 ORTHO05D004803 1.4e-13 81.6 159 28.9
Medtr7g111550 Medicago truncatula HOM05D003913 ORTHO05D004803 1.8e-13 81.3 102 43.1
CBR_g49506 Chara braunii HOM05D003913 ORTHO05D004803 2.4e-13 80.9 405 54.3
Medtr7g079470 Medicago truncatula HOM05D003913 ORTHO05D004803 4.1e-13 80.1 61 63.9
Glyma.17G173200 Glycine max HOM05D003913 ORTHO05D004803 2.3e-11 74.3 57 61.4
BolC6t38648H Brassica oleracea HOM05D003420 ORTHO05D003970 2.0e-07 61.2 57 50.9
CSS0010217 Camellia sinensis var. sinensis HOM05D003913 ORTHO05D004803 1.7e-06 58.2 36 77.8
Cpa.g.sc66.118 Carica papaya HOM05D003913 ORTHO05D004411 3.7e-06 57.0 28 82.1
BolC6t38646H Brassica oleracea HOM05D003913 ORTHO05D004803 6.3e-06 56.2 153 31.4


User provided reference genes

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