Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G2794 Fragaria x ananassa HOM05D005534 ORTHO05D006642 1.6e-163 579.3 291 100.0
FvH4_5g33060 Fragaria vesca HOM05D005534 ORTHO05D006642 6.7e-133 477.6 347 76.1
RcHm_v2.0_Chr7g0231231 Rosa chinensis HOM05D005534 ORTHO05D006642 1.8e-125 453.0 352 72.2
MD04G1240000 Malus domestica HOM05D005534 ORTHO05D006642 9.1e-106 387.5 344 65.4
MD08G1215200 Malus domestica HOM05D005534 ORTHO05D006642 1.2e-105 387.1 345 65.5
MD15G1399100 Malus domestica HOM05D005534 ORTHO05D006642 2.0e-105 386.3 347 65.1
Prupe.1G530500 Prunus persica HOM05D005534 ORTHO05D006642 2.9e-104 382.5 335 64.2
TAR381G0138 Trochodendron aralioides HOM05D005534 ORTHO05D006642 5.3e-98 361.7 320 62.8
Haze_13929 Corylus avellana HOM05D005534 ORTHO05D006642 2.0e-97 359.8 362 59.1
GSVIVG01036434001 Vitis vinifera HOM05D005534 ORTHO05D006642 4.5e-97 358.6 263 70.7
CiPaw.04G011000 Carya illinoinensis HOM05D005534 ORTHO05D006642 5.9e-97 358.2 346 59.8
QL09p004039 Quercus lobata HOM05D005534 ORTHO05D006642 2.5e-95 352.8 353 58.6
Rhsim12G0004300 Rhododendron simsii HOM05D005534 ORTHO05D006642 2.5e-95 352.8 259 71.0
Atru.chr13.2420 Acer truncatum HOM05D005534 ORTHO05D006642 3.2e-95 352.4 347 57.9
QL09p002970 Quercus lobata HOM05D005534 ORTHO05D006642 3.2e-95 352.4 261 69.7
PGSC0003DMG401019416 Solanum tuberosum HOM05D005534 ORTHO05D006642 5.5e-95 351.7 334 57.8
Potri.013G101700 Populus trichocarpa HOM05D005534 ORTHO05D006642 9.4e-95 350.9 338 60.4
Nn1g07947 Nelumbo nucifera HOM05D005534 ORTHO05D006642 1.2e-94 350.5 320 61.2
CAN.G911.34 Capsicum annuum HOM05D005534 ORTHO05D006642 2.1e-94 349.7 321 59.2
vmacro00924 Vaccinium macrocarpon HOM05D005534 ORTHO05D006642 2.1e-94 349.7 264 69.7
Thecc.08G173200 Theobroma cacao HOM05D005534 ORTHO05D006642 2.7e-94 349.4 261 69.7
CsaV3_5G040210 Cucumis sativus L. HOM05D005534 ORTHO05D006642 3.6e-94 349.0 336 58.3
Solyc10g012160.3 Solanum lycopersicum HOM05D005534 ORTHO05D006642 6.1e-94 348.2 334 56.9
Sopen10g005920 Solanum pennellii HOM05D005534 ORTHO05D006642 6.1e-94 348.2 334 57.2
Nitab4.5_0006008g0020 Nicotiana tabacum HOM05D005534 ORTHO05D006642 1.0e-93 347.4 331 57.7
Peaxi162Scf00065g00017 Petunia axillaris HOM05D005534 ORTHO05D006642 1.0e-93 347.4 309 59.9
ClCG08G000650 Citrullus lanatus HOM05D005534 ORTHO05D006642 1.8e-93 346.7 337 58.5
Manes.18G119700 Manihot esculenta HOM05D005534 ORTHO05D006642 3.0e-93 345.9 343 58.6
TWI18G0032 Tripterygium wilfordii HOM05D005534 ORTHO05D006642 3.0e-93 345.9 350 56.0
Duzib177G1179 Durio zibethinus HOM05D005534 ORTHO05D006642 5.2e-93 345.1 338 58.3
Nitab4.5_0000731g0130 Nicotiana tabacum HOM05D005534 ORTHO05D006642 5.2e-93 345.1 331 57.7
Sp1g20290 Schrenkiella parvula HOM05D005534 ORTHO05D006642 6.7e-93 344.7 260 68.5
Ciclev10020832m.g Citrus clementina HOM05D005534 ORTHO05D006642 8.8e-93 344.4 327 57.8
Gohir.D13G120700 Gossypium hirsutum HOM05D005534 ORTHO05D006642 8.8e-93 344.4 261 68.2
MBI06_g06677_MAGBIO Magnolia biondii HOM05D005534 ORTHO05D006642 1.1e-92 344.0 261 67.4
AL1G36350 Arabidopsis lyrata HOM05D005534 ORTHO05D006642 1.5e-92 343.6 355 54.6
EL10Ac1g01529 Beta vulgaris HOM05D005534 ORTHO05D006642 1.5e-92 343.6 310 59.7
THA.LOC104800087 Tarenaya hassleriana HOM05D005534 ORTHO05D006642 1.5e-92 343.6 349 56.4
Duzib177G1161 Durio zibethinus HOM05D005534 ORTHO05D006642 2.0e-92 343.2 339 58.1
Medtr3g005730 Medicago truncatula HOM05D005534 ORTHO05D006642 2.6e-92 342.8 263 67.3
Eucgr.F04073 Eucalyptus grandis HOM05D005534 ORTHO05D006642 5.7e-92 341.7 263 67.7
Actinidia23022 Actinidia chinensis HOM05D005534 ORTHO05D006642 7.4e-92 341.3 268 66.4
Migut.J01545 Erythranthe guttata HOM05D005534 ORTHO05D006642 9.7e-92 340.9 260 68.1
Hund26700 Selenicereus undatus HOM05D005534 ORTHO05D006642 9.7e-92 340.9 341 55.4
BcaNung06443 Brassica carinata HOM05D005534 ORTHO05D006642 1.7e-91 340.1 350 55.7
AT1G22800 Arabidopsis thaliana HOM05D005534 ORTHO05D006642 2.8e-91 339.3 355 54.1
CARHR023160 Cardamine hirsuta HOM05D005534 ORTHO05D006642 3.7e-91 339.0 263 65.4
CSS0044704 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 4.8e-91 338.6 259 68.0
Thhalv10007396m.g Eutrema salsugineum HOM05D005534 ORTHO05D006642 4.8e-91 338.6 262 66.8
PGR044G1073 Punica granatum HOM05D005534 ORTHO05D006642 6.3e-91 338.2 292 61.6
ECA234G3974 Erigeron canadensis HOM05D005534 ORTHO05D006642 8.2e-91 337.8 260 67.3
MSTRG.6297 Avicennia marina HOM05D005534 ORTHO05D006642 1.1e-90 337.4 260 66.5
Carub.0001s2231 Capsella rubella HOM05D005534 ORTHO05D006642 2.4e-90 336.3 263 65.4
AUR62026718 Chenopodium quinoa HOM05D005534 ORTHO05D006642 2.4e-90 336.3 341 54.8
Lalb_Chr07g0177551 Lupinus albus HOM05D005534 ORTHO05D006642 2.0e-89 333.2 261 65.5
Sc19g0002770 Simmondsia chinensis HOM05D005534 ORTHO05D006642 2.0e-89 333.2 323 57.3
Lj3g0019199 Lotus japonicus HOM05D005534 ORTHO05D006642 2.6e-89 332.8 268 64.6
Cc00_g25290 Coffea canephora HOM05D005534 ORTHO05D006642 3.5e-89 332.4 260 65.4
Dinv18373 Davidia involucrata HOM05D005534 ORTHO05D006642 5.9e-89 331.6 379 52.8
BcaNung06107 Brassica carinata HOM05D005534 ORTHO05D006642 1.0e-88 330.9 330 56.7
Lsat_1_v5_gn_5_78481 Lactuca sativa HOM05D005534 ORTHO05D006642 1.3e-88 330.5 312 57.4
Gorai.013G134900 Gossypium raimondii HOM05D005534 ORTHO05D006642 2.2e-88 329.7 288 61.8
PSO017G6214 Papaver somniferum HOM05D005534 ORTHO05D006642 5.0e-88 328.6 337 55.2
HPP92_005621 Vanilla planifolia HOM05D005534 ORTHO05D006642 1.9e-87 326.6 326 56.1
SalBow6G6434 Salvia bowleyana HOM05D005534 ORTHO05D006642 2.5e-87 326.2 287 61.0
A09p41950 Brassica napus HOM05D005534 ORTHO05D006642 1.2e-86 323.9 342 55.3
CDE02G4760 Ceratophyllum demersum HOM05D005534 ORTHO05D006642 1.2e-86 323.9 326 57.1
VMungo1080G0932 Vigna mungo HOM05D005534 ORTHO05D006642 1.2e-86 323.9 266 63.2
arahy.Tifrunner.gnm1.ann1.H1ATJ8 Arachis hypogaea HOM05D005534 ORTHO05D006642 1.6e-86 323.6 265 64.5
TPR.G25542 Trifolium pratense HOM05D005534 ORTHO05D006642 2.7e-86 322.8 264 65.2
Glyma.04G257200 Glycine max HOM05D005534 ORTHO05D006642 1.0e-85 320.9 263 64.3
COL.COLO4_05589 Corchorus olitorius HOM05D005534 ORTHO05D006642 1.4e-85 320.5 338 56.8
Aqoxy2G03821 Aquilegia oxysepala HOM05D005534 ORTHO05D006642 1.8e-85 320.1 263 62.0
Glyma.12G242500 Glycine max HOM05D005534 ORTHO05D006642 4.0e-85 318.9 265 63.4
Phvul.005G001600 Phaseolus vulgaris HOM05D005534 ORTHO05D006642 4.0e-85 318.9 266 62.8
Zm00001eb411080 Zea mays HOM05D005534 ORTHO05D006642 1.2e-84 317.4 260 64.2
Oeu034751.1 Olea europaea HOM05D005534 ORTHO05D006642 4.8e-83 312.0 307 55.4
Oeu034752.2 Olea europaea HOM05D005534 ORTHO05D006642 4.8e-83 312.0 307 55.4
BolC5t30885H Brassica oleracea HOM05D005534 ORTHO05D006642 8.3e-83 311.2 330 54.5
BraA09t39683Z Brassica rapa HOM05D005534 ORTHO05D006642 1.6e-81 307.0 352 52.8
Cpa.g.sc438.5 Carica papaya HOM05D005534 ORTHO05D006642 3.5e-81 305.8 304 57.6
Aa31LG7G6790 Aethionema arabicum HOM05D005534 ORTHO05D006642 2.5e-79 299.7 379 49.6
arahy.Tifrunner.gnm1.ann1.A8RPUL Arachis hypogaea HOM05D005534 ORTHO05D006642 7.2e-79 298.1 313 54.0
Psat1g000160 Pisum sativum HOM05D005534 ORTHO05D006642 2.8e-75 286.2 232 65.5
AUR62013571 Chenopodium quinoa HOM05D005534 ORTHO05D006642 4.8e-75 285.4 262 56.5
Sabra13G0088100 Salix brachista HOM05D005534 ORTHO05D006642 4.8e-75 285.4 305 54.1
Gohir.A13G117400 Gossypium hirsutum HOM05D005534 ORTHO05D006642 1.1e-74 284.3 288 57.6
MELO3C022197.2 Cucumis melo HOM05D005534 ORTHO05D006642 1.0e-72 277.7 279 55.2
SGA_v2.0_scaffold69G23189 Striga asiatica HOM05D005534 ORTHO05D006642 2.9e-72 276.2 271 57.6
HPP92_005624 Vanilla planifolia HOM05D005534 ORTHO05D006642 1.9e-71 273.5 237 60.3
DCAR_022334 Daucus carota HOM05D005534 ORTHO05D006642 2.1e-70 270.0 283 55.5
Ca_13980_v3 Cicer arietinum L. HOM05D005534 ORTHO05D006642 3.0e-69 266.2 275 56.0
PSO170G0367 Papaver somniferum HOM05D005534 ORTHO05D006642 1.5e-68 263.8 230 60.9
Mapoly0125s0040 Marchantia polymorpha HOM05D005534 ORTHO05D006642 5.7e-68 261.9 350 46.0
Pp3c3_32560 Physcomitrium patens HOM05D005534 ORTHO05D006642 4.9e-67 258.8 268 53.0
SMO232G0033 Selaginella moellendorffii HOM05D005534 ORTHO05D006642 3.2e-66 256.1 263 51.3
SHI08987 Sapria himalayana HOM05D005534 ORTHO05D006642 1.2e-65 254.2 264 53.8
Lj1A290T42 Lonicera japonica HOM05D005534 ORTHO05D006642 2.1e-62 243.4 205 62.4
unitig_899.g15650 Utricularia gibba HOM05D005534 ORTHO05D006642 2.1e-62 243.4 200 64.0
CANSAT25G1380 Cannabis sativa HOM05D005534 ORTHO05D006642 3.4e-60 236.1 132 86.4
CBR_g29440 Chara braunii HOM05D000921 ORTHO05D004153 6.0e-57 225.3 264 46.6
Gohir.A13G117500 Gossypium hirsutum HOM05D005534 ORTHO05D006642 6.6e-56 221.9 244 56.6
C05p21900 Brassica napus HOM05D005534 ORTHO05D006642 7.3e-55 218.4 262 50.4
vmacro22753 Vaccinium macrocarpon HOM05D005534 ORTHO05D006642 2.3e-53 213.4 234 53.4
Hma1.2p1_0708F.1_g207140 Hydrangea macrophylla HOM05D005534 ORTHO05D006642 3.7e-51 206.1 119 84.9
HPP92_005612 Vanilla planifolia HOM05D005534 ORTHO05D006642 6.4e-51 205.3 200 56.0
C07p20870 Brassica napus HOM05D005534 ORTHO05D006642 2.3e-48 196.8 127 78.0
BolC7t42620H Brassica oleracea HOM05D005534 ORTHO05D006642 2.3e-48 196.8 127 78.0
Sed0013677 Sechium edule HOM05D005534 ORTHO05D006642 2.1e-46 190.3 237 50.2
ATR0681G326 Amborella trichopoda HOM05D005534 ORTHO05D006642 4.7e-46 189.1 235 47.2
Cre13.g584750 Chlamydomonas reinhardtii HOM05D005534 ORTHO05D006642 1.8e-45 187.2 302 40.1
BcaC06g34996 Brassica carinata HOM05D005534 ORTHO05D006642 2.3e-45 186.8 123 75.6
Potri.013G101900 Populus trichocarpa HOM05D005534 ORTHO05D006642 3.7e-43 179.5 176 60.2
A07p14190 Brassica napus HOM05D005534 ORTHO05D006642 3.9e-40 169.5 153 64.7
TPR.G30718 Trifolium pratense HOM05D005534 ORTHO05D006642 8.1e-38 161.8 247 43.3
Lj1A297G57 Lonicera japonica HOM05D005534 ORTHO05D006642 2.9e-35 153.3 87 83.9
Lj1A297T60 Lonicera japonica HOM05D005534 ORTHO05D006642 4.9e-35 152.5 146 56.8
AagrBONN_evm.TU.Sc2ySwM_117.1319 Anthoceros agrestis HOM05D005534 ORTHO05D006642 3.5e-33 146.4 179 48.6
PRCOL_00005850 Prasinoderma coloniale HOM05D005534 ORTHO05D006642 6.6e-32 142.1 201 42.8
CANSAT25G1946 Cannabis sativa HOM05D005534 ORTHO05D006642 1.5e-28 131.0 157 52.9
Cfa025826 Carpinus fangiana HOM05D005534 ORTHO05D006642 3.4e-28 129.8 144 47.2
CSS0018807 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 6.4e-27 125.6 196 40.3
FAN08G1090 Fragaria x ananassa HOM05D005534 ORTHO05D006642 1.9e-26 124.0 137 55.5
CSS0033231 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 4.8e-22 109.4 149 45.0
Hma1.2p1_0708F.1_g207130 Hydrangea macrophylla HOM05D005534 ORTHO05D006642 6.4e-19 99.0 120 48.3
Zm00001eb320410 Zea mays HOM05D005534 ORTHO05D006642 1.6e-17 94.4 82 58.5
Os12g0203100 Oryza sativa ssp. japonica HOM05D005534 ORTHO05D006642 7.9e-17 92.0 73 63.0
SEGI_21404 Sequoiadendron giganteum HOM05D005534 ORTHO05D006642 3.0e-16 90.1 120 45.0
HanXRQChr11g0339001 Helianthus annuus HOM05D005534 ORTHO05D006642 2.8e-14 83.6 55 70.9
MCO12G480 Micromonas commoda HOM05D005534 ORTHO05D006642 3.7e-14 83.2 110 43.6
A07p14200 Brassica napus HOM05D002040 ORTHO05D006642 1.1e-13 81.6 82 50.0
BraA07t29177Z Brassica rapa HOM05D005534 ORTHO05D006642 8.4e-11 72.0 141 35.5
Lj1A290T43 Lonicera japonica HOM05D005534 ORTHO05D006642 2.1e-09 67.4 36 83.3


User provided reference genes

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