Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G2708 Fragaria x ananassa HOM05D004949 ORTHO05D006006 3.0e-293 1011.1 517 100.0
FAN18G3647 Fragaria x ananassa HOM05D004949 ORTHO05D006006 3.6e-254 881.3 565 84.8
FAN04G2495 Fragaria x ananassa HOM05D004949 ORTHO05D006006 7.9e-246 853.6 564 81.9
FvH4_5g22370 Fragaria vesca HOM05D004949 ORTHO05D006006 1.5e-244 849.4 469 95.5
FAN13G2248 Fragaria x ananassa HOM05D004949 ORTHO05D006006 9.4e-239 830.1 467 93.1
RcHm_v2.0_Chr7g0210111 Rosa chinensis HOM05D004949 ORTHO05D006006 9.5e-207 723.8 469 79.5
Prupe.5G033200 Prunus persica HOM05D004949 ORTHO05D006006 5.2e-173 611.7 467 68.5
Cfa012457 Carpinus fangiana HOM05D004949 ORTHO05D006006 2.5e-151 539.7 472 60.6
CANSAT21G1226 Cannabis sativa HOM05D004949 ORTHO05D006006 2.1e-150 536.6 471 61.1
TAR375G0033 Trochodendron aralioides HOM05D004949 ORTHO05D006006 2.1e-150 536.6 478 59.8
Phvul.003G284400 Phaseolus vulgaris HOM05D004949 ORTHO05D006006 7.6e-148 528.1 475 57.7
Actinidia25973 Actinidia chinensis HOM05D004949 ORTHO05D006006 9.3e-146 521.2 468 59.6
CSS0006782 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 9.3e-146 521.2 465 59.6
Eucgr.E00272 Eucalyptus grandis HOM05D004949 ORTHO05D006006 1.0e-144 517.7 473 56.7
Lj4g0000928 Lotus japonicus HOM05D004949 ORTHO05D006006 1.0e-144 517.7 478 55.6
Rhsim11G0048300 Rhododendron simsii HOM05D004949 ORTHO05D006006 2.3e-144 516.5 473 57.1
Duzib068G0117 Durio zibethinus HOM05D004949 ORTHO05D006006 7.4e-143 511.5 467 57.6
Potri.003G093300 Populus trichocarpa HOM05D004949 ORTHO05D006006 2.8e-142 509.6 471 57.3
Nn1g00131 Nelumbo nucifera HOM05D004949 ORTHO05D006006 4.8e-142 508.8 477 56.0
GSVIVG01013143001 Vitis vinifera HOM05D004949 ORTHO05D006006 1.8e-141 506.9 485 56.3
CsaV3_3G001560 Cucumis sativus L. HOM05D004949 ORTHO05D006006 5.3e-141 505.4 475 58.1
TWI15G0747 Tripterygium wilfordii HOM05D004949 ORTHO05D006006 6.9e-141 505.0 471 56.1
COL.COLO4_17003 Corchorus olitorius HOM05D004949 ORTHO05D006006 2.0e-140 503.4 478 55.4
Manes.17G017708 Manihot esculenta HOM05D004949 ORTHO05D006006 1.7e-139 500.4 465 55.5
arahy.Tifrunner.gnm1.ann1.78T75P Arachis hypogaea HOM05D004949 ORTHO05D006006 6.5e-139 498.4 462 57.1
Lalb_Chr05g0228811 Lupinus albus HOM05D004949 ORTHO05D006006 1.9e-138 496.9 463 56.2
Sed0027872 Sechium edule HOM05D004949 ORTHO05D006006 4.6e-137 492.3 474 56.5
VMungo1309G0709 Vigna mungo HOM05D004949 ORTHO05D006006 4.6e-137 492.3 473 54.5
PSO782G4101 Papaver somniferum HOM05D004949 ORTHO05D006006 7.9e-137 491.5 476 54.2
Sc01g0007370 Simmondsia chinensis HOM05D004949 ORTHO05D006006 3.0e-136 489.6 466 54.1
Medtr8g066760 Medicago truncatula HOM05D004949 ORTHO05D006006 3.9e-136 489.2 478 55.4
PSO063G1669 Papaver somniferum HOM05D004949 ORTHO05D006006 5.1e-136 488.8 476 53.8
CSS0020726 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 6.7e-136 488.4 447 59.5
VMungo0251G0718 Vigna mungo HOM05D004949 ORTHO05D006006 2.5e-135 486.5 437 57.9
Ciclev10031452m.g Citrus clementina HOM05D004949 ORTHO05D006006 3.3e-135 486.1 472 53.4
PGR042G3443 Punica granatum HOM05D004949 ORTHO05D006006 5.7e-135 485.3 473 53.3
Carub.0007s2343 Capsella rubella HOM05D004949 ORTHO05D006006 2.8e-134 483.0 476 54.0
Atru.chr6.1656 Acer truncatum HOM05D004949 ORTHO05D006006 8.2e-134 481.5 465 54.6
Cc08_g02960 Coffea canephora HOM05D004949 ORTHO05D006006 1.8e-133 480.3 473 54.1
Aa31LG6G660 Aethionema arabicum HOM05D004949 ORTHO05D006006 5.3e-133 478.8 473 52.9
CARHR224640 Cardamine hirsuta HOM05D004949 ORTHO05D006006 1.2e-132 477.6 472 52.5
BcaC01g05139 Brassica carinata HOM05D004949 ORTHO05D006006 4.5e-132 475.7 474 53.2
BolC3t15350H Brassica oleracea HOM05D004949 ORTHO05D006006 4.5e-132 475.7 474 53.2
Haze_08210 Corylus avellana HOM05D004949 ORTHO05D006006 5.9e-132 475.3 467 55.7
Hma1.2p1_0120F.1_g057130 Hydrangea macrophylla HOM05D004949 ORTHO05D006006 7.7e-132 474.9 473 53.7
BcaB01g03270 Brassica carinata HOM05D004949 ORTHO05D006006 1.0e-131 474.6 474 52.5
AL7G36600 Arabidopsis lyrata HOM05D004949 ORTHO05D006006 1.7e-131 473.8 476 52.5
BraA03t11719Z Brassica rapa HOM05D004949 ORTHO05D006006 1.7e-131 473.8 475 52.8
Aqoxy3G00659 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 8.5e-131 471.5 495 52.7
A03p25190 Brassica napus HOM05D004949 ORTHO05D006006 8.5e-131 471.5 474 52.5
C03p30030 Brassica napus HOM05D004949 ORTHO05D006006 8.5e-131 471.5 474 52.5
Aqoxy3G01363 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 1.4e-130 470.7 495 52.7
Thhalv10001430m.g Eutrema salsugineum HOM05D004949 ORTHO05D006006 3.2e-130 469.5 473 51.6
Gohir.A03G000052 Gossypium hirsutum HOM05D004949 ORTHO05D006006 2.3e-128 463.4 473 51.2
Gorai.003G183400 Gossypium raimondii HOM05D004949 ORTHO05D006006 3.0e-128 463.0 471 51.4
Sabra03G0062700 Salix brachista HOM05D004949 ORTHO05D006006 8.8e-128 461.5 431 55.9
ECA233G0790 Erigeron canadensis HOM05D004949 ORTHO05D006006 2.0e-127 460.3 472 51.3
Psat4g121520 Pisum sativum HOM05D004949 ORTHO05D006006 2.8e-126 456.4 389 60.2
HanXRQChr02g0049971 Helianthus annuus HOM05D004949 ORTHO05D006006 8.2e-126 454.9 472 50.4
QL12p004876 Quercus lobata HOM05D004949 ORTHO05D006006 1.1e-125 454.5 693 40.4
CAN.G298.24 Capsicum annuum HOM05D004949 ORTHO05D006006 5.3e-125 452.2 474 52.5
Solyc08g076810.4 Solanum lycopersicum HOM05D004949 ORTHO05D006006 5.9e-124 448.7 471 53.1
CiPaw.12G064900 Carya illinoinensis HOM05D004949 ORTHO05D006006 2.2e-123 446.8 473 52.4
Sopen08g025330 Solanum pennellii HOM05D004949 ORTHO05D006006 2.9e-123 446.4 471 53.1
AT4G17910 Arabidopsis thaliana HOM05D004949 ORTHO05D006006 5.5e-122 442.2 450 52.9
arahy.Tifrunner.gnm1.ann1.M3M86A Arachis hypogaea HOM05D004949 ORTHO05D006006 3.9e-120 436.0 462 51.7
THA.LOC104812834 Tarenaya hassleriana HOM05D004949 ORTHO05D006006 8.8e-120 434.9 410 54.1
Glyma.08G270900 Glycine max HOM05D004949 ORTHO05D006006 4.4e-119 432.6 404 57.2
Dinv28969 Davidia involucrata HOM05D004949 ORTHO05D006006 8.2e-118 428.3 393 57.8
SalBow6G3319 Salvia bowleyana HOM05D004949 ORTHO05D006006 8.2e-118 428.3 506 48.2
Lsat_1_v5_gn_6_4100 Lactuca sativa HOM05D004949 ORTHO05D006006 3.1e-117 426.4 471 49.3
Nitab4.5_0002773g0060 Nicotiana tabacum HOM05D004949 ORTHO05D006006 5.3e-117 425.6 431 53.4
ATR0665G211 Amborella trichopoda HOM05D004949 ORTHO05D006006 1.6e-116 424.1 478 50.4
Os03g0378200 Oryza sativa ssp. japonica HOM05D004949 ORTHO05D006006 7.7e-116 421.8 465 49.9
MD00G1071700 Malus domestica HOM05D004949 ORTHO05D006006 1.0e-115 421.4 384 59.9
EL10Ac5g12089 Beta vulgaris HOM05D004949 ORTHO05D006006 2.2e-115 420.2 465 50.1
Zm00001eb018410 Zea mays HOM05D004949 ORTHO05D006006 3.2e-114 416.4 475 47.2
Sp4g27350 Schrenkiella parvula HOM05D004949 ORTHO05D006006 5.2e-112 409.1 448 49.1
SalBow8G0555 Salvia bowleyana HOM05D004949 ORTHO05D006006 1.2e-111 407.9 470 48.9
Nitab4.5_0005651g0010 Nicotiana tabacum HOM05D004949 ORTHO05D006006 1.8e-109 400.6 431 51.3
SEGI_29978 Sequoiadendron giganteum HOM05D004949 ORTHO05D006006 1.8e-104 384.0 477 47.0
vmacro00318 Vaccinium macrocarpon HOM05D004949 ORTHO05D006006 3.0e-104 383.3 538 44.1
Oeu048371.1 Olea europaea HOM05D004949 ORTHO05D006006 6.8e-104 382.1 374 54.3
Peaxi162Scf00236g00034 Petunia axillaris HOM05D004949 ORTHO05D006006 1.5e-103 380.9 422 50.5
CDE06G2155 Ceratophyllum demersum HOM05D004949 ORTHO05D006006 1.3e-102 377.9 456 48.2
MSTRG.7638 Avicennia marina HOM05D004949 ORTHO05D006006 2.2e-102 377.1 335 58.5
Mapoly0029s0019 Marchantia polymorpha HOM05D004949 ORTHO05D006006 3.7e-102 376.3 497 44.7
Zm00001eb392220 Zea mays HOM05D004949 ORTHO05D006006 1.4e-101 374.4 408 48.8
Thecc.03G225400 Theobroma cacao HOM05D004949 ORTHO05D006006 9.1e-101 371.7 383 52.7
MD06G1036000 Malus domestica HOM05D004949 ORTHO05D006006 5.9e-100 369.0 298 65.8
TPR.G3324 Trifolium pratense HOM05D004949 ORTHO05D006006 1.0e-99 368.2 304 60.9
Ca_14051_v3 Cicer arietinum L. HOM05D004949 ORTHO05D006006 5.5e-98 362.5 369 52.8
MELO3C013842.2 Cucumis melo HOM05D004949 ORTHO05D006006 2.3e-96 357.1 500 46.2
unitig_0.g2339 Utricularia gibba HOM05D004949 ORTHO05D006006 6.8e-96 355.5 433 46.9
AUR62018700 Chenopodium quinoa HOM05D004949 ORTHO05D006006 2.0e-95 354.0 467 45.2
Pp3c15_10960 Physcomitrium patens HOM05D004949 ORTHO05D006006 5.7e-95 352.4 483 43.1
DCAR_008253 Daucus carota HOM05D004949 ORTHO05D006006 6.1e-89 332.4 435 43.7
HPP92_016910 Vanilla planifolia HOM05D004949 ORTHO05D006006 1.2e-87 328.2 368 48.9
SHI07305 Sapria himalayana HOM05D004949 ORTHO05D006006 1.7e-86 324.3 355 50.1
SMO351G0610 Selaginella moellendorffii HOM05D004949 ORTHO05D006006 1.9e-85 320.9 484 41.5
PGSC0003DMG400017541 Solanum tuberosum HOM05D004949 ORTHO05D006006 4.1e-85 319.7 304 54.9
DCAR_028920 Daucus carota HOM05D004949 ORTHO05D006006 5.4e-85 319.3 294 55.4
AagrBONN_evm.TU.Sc2ySwM_368.549 Anthoceros agrestis HOM05D004949 ORTHO05D006006 8.6e-83 312.0 468 42.3
Gohir.D03G172700 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.2e-81 308.1 298 53.0
Nitab4.5_0000711g0030 Nicotiana tabacum HOM05D004949 ORTHO05D006006 6.0e-76 289.3 277 54.2
Migut.L01003 Erythranthe guttata HOM05D004949 ORTHO05D006006 7.8e-76 288.9 267 54.7
Medtr1g100910 Medicago truncatula HOM05D004949 ORTHO05D006006 1.2e-71 275.0 241 58.1
Migut.O00927 Erythranthe guttata HOM05D004949 ORTHO05D006006 4.6e-68 263.1 309 52.1
CBR_g46224 Chara braunii HOM05D004949 ORTHO05D006006 1.3e-67 261.5 461 36.0
SGA_v2.0_scaffold38G15014 Striga asiatica HOM05D004949 ORTHO05D006006 2.5e-66 257.3 387 41.3
Lj8A304G48 Lonicera japonica HOM05D004949 ORTHO05D006006 6.8e-64 249.2 255 52.2
Aa31LG2G21460 Aethionema arabicum HOM05D004949 ORTHO05D006006 6.4e-62 242.7 167 67.1
Ah.12g055170 Amaranthus hybridus HOM05D004949 ORTHO05D006006 7.1e-61 239.2 517 34.2
Hund11225 Selenicereus undatus HOM05D004949 ORTHO05D006006 5.6e-58 229.6 309 42.4
Gohir.A09G031300 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.6e-57 228.0 294 43.5
MD06G1036200 Malus domestica HOM05D004949 ORTHO05D006006 7.8e-52 209.1 164 65.9
Rhsim11G0016800 Rhododendron simsii HOM05D004949 ORTHO05D006006 1.5e-42 178.3 453 32.0
MBI04_g33883_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 6.9e-40 169.5 200 50.5
Cfa022893 Carpinus fangiana HOM05D004949 ORTHO05D006006 7.6e-39 166.0 569 29.7
Cre13.g587200 Chlamydomonas reinhardtii HOM05D004949 ORTHO05D006006 2.5e-37 161.0 549 28.6
MBI04_g33882_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 4.3e-34 150.2 107 66.4
Nitab4.5_0000711g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 2.1e-33 147.9 141 55.3
PGSC0003DMG400017507 Solanum tuberosum HOM05D004949 ORTHO05D006006 2.8e-33 147.5 172 46.5
PRCOL_00001577 Prasinoderma coloniale HOM05D004949 ORTHO05D006006 4.5e-31 140.2 365 30.7
Gohir.A06G130506 Gossypium hirsutum HOM05D004949 ORTHO05D006006 8.4e-30 136.0 167 47.9
Psat7g200760 Pisum sativum HOM05D004949 ORTHO05D006006 1.9e-29 134.8 157 49.7
TPR.G3338 Trifolium pratense HOM05D004949 ORTHO05D006006 3.8e-22 110.5 145 45.5
Nitab4.5_0003568g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 7.2e-21 106.3 141 44.7
Migut.L01002 Erythranthe guttata HOM05D004949 ORTHO05D006006 1.4e-19 102.1 64 79.7
TPR.G40857 Trifolium pratense HOM05D004949 ORTHO05D006006 1.3e-17 95.5 83 59.0
Cpa.g.sc34.32 Carica papaya HOM05D004949 ORTHO05D006006 2.2e-17 94.7 83 55.4
Gohir.A01G164900 Gossypium hirsutum HOM05D004949 ORTHO05D006006 3.1e-16 90.9 75 57.3
Gohir.A04G065628 Gossypium hirsutum HOM05D004949 ORTHO05D006006 3.1e-16 90.9 75 57.3
Gohir.A05G283800 Gossypium hirsutum HOM05D004949 ORTHO05D006006 6.9e-16 89.7 75 56.0
Glyma.01G095566 Glycine max HOM05D004949 ORTHO05D006006 3.4e-15 87.4 117 39.3
Gohir.A03G116100 Gossypium hirsutum HOM05D004949 ORTHO05D006006 5.9e-15 86.7 75 56.0
ClCG10G001480 Citrullus lanatus HOM05D004949 ORTHO05D006006 5.0e-14 83.6 116 45.7
MSTRG.865 Avicennia marina HOM05D004949 ORTHO05D006006 4.2e-13 80.5 121 37.2
AUR62007303 Chenopodium quinoa HOM05D004949 ORTHO05D006006 1.2e-12 79.0 105 45.7
Lj8A304G49 Lonicera japonica HOM05D004949 ORTHO05D006006 1.1e-10 72.4 89 43.8
PSO541G1551 Papaver somniferum HOM05D004949 ORTHO05D009901 4.8e-09 67.0 44 68.2
Gohir.A12G128750 Gossypium hirsutum HOM05D004949 ORTHO05D006006 2.0e-07 61.6 52 53.8
TPR.G39375 Trifolium pratense HOM05D004949 ORTHO05D006006 6.5e-06 56.6 46 58.7
Psat0ss26165g0120 Pisum sativum HOM05D004949 ORTHO05D006006 8.5e-06 56.2 66 53.0


User provided reference genes

Program Settings