Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G2695 Fragaria x ananassa HOM05D003086 ORTHO05D003347 3.3e-40 167.9 84 100.0
FAN13G3255 Fragaria x ananassa HOM05D003086 ORTHO05D003347 5.2e-38 160.6 84 98.8
FvH4_5g11470 Fragaria vesca HOM05D003086 ORTHO05D003347 1.7e-36 155.6 84 94.0
FAN08G3604 Fragaria x ananassa HOM05D003086 ORTHO05D003347 3.0e-33 144.8 84 90.5
FAN04G2505 Fragaria x ananassa HOM05D003086 ORTHO05D003347 1.1e-32 142.9 84 90.5
RcHm_v2.0_Chr7g0186341 Rosa chinensis HOM05D003086 ORTHO05D003347 1.7e-28 129.0 88 79.5
Prupe.5G126200 Prunus persica HOM05D003086 ORTHO05D003347 1.0e-17 93.2 81 64.2
MD06G1113400 Malus domestica HOM05D003086 ORTHO05D003347 2.5e-16 88.6 87 60.9
Potri.001G087200 Populus trichocarpa HOM05D003086 ORTHO05D003347 8.1e-15 83.6 94 59.6
CiPaw.12G080100 Carya illinoinensis HOM05D003086 ORTHO05D003347 1.4e-14 82.8 80 63.8
Haze_09122 Corylus avellana HOM05D003086 ORTHO05D003347 1.4e-14 82.8 81 60.5
Manes.02G005600 Manihot esculenta HOM05D003086 ORTHO05D003347 1.8e-14 82.4 90 56.7
QL02p028382 Quercus lobata HOM05D003086 ORTHO05D003347 1.8e-14 82.4 83 57.8
TWI60G1451 Tripterygium wilfordii HOM05D003086 ORTHO05D003347 6.8e-14 80.5 81 58.0
Sabra01G0063400 Salix brachista HOM05D003086 ORTHO05D003347 4.4e-13 77.8 93 57.0
Cpa.g.sc1802.1 Carica papaya HOM05D003086 ORTHO05D003347 7.6e-13 77.0 74 59.5
Manes.01G053400 Manihot esculenta HOM05D003086 ORTHO05D003347 6.4e-12 73.9 89 50.6
Sed0015662 Sechium edule HOM05D003086 ORTHO05D003347 6.4e-12 73.9 83 51.8
Thecc.03G304600 Theobroma cacao HOM05D003086 ORTHO05D003347 1.1e-11 73.2 72 54.2
Gorai.004G131100 Gossypium raimondii HOM05D003086 ORTHO05D003347 1.4e-11 72.8 64 60.9
ClCG01G001890 Citrullus lanatus HOM05D003086 ORTHO05D003347 1.9e-11 72.4 64 60.9
Psat7g022720 Pisum sativum HOM05D003086 ORTHO05D003347 2.4e-11 72.0 82 52.4
Thecc.03G304300 Theobroma cacao HOM05D003086 ORTHO05D003347 4.1e-11 71.2 72 54.2
AL6G44860 Arabidopsis lyrata HOM05D003086 ORTHO05D003347 7.1e-11 70.5 64 57.8
CARHR255790 Cardamine hirsuta HOM05D003086 ORTHO05D003347 7.1e-11 70.5 67 55.2
Gohir.A08G111400 Gossypium hirsutum HOM05D003086 ORTHO05D003347 7.1e-11 70.5 64 59.4
Gohir.D08G124400 Gossypium hirsutum HOM05D003086 ORTHO05D003347 7.1e-11 70.5 64 59.4
MELO3C005750.2 Cucumis melo HOM05D003086 ORTHO05D003347 9.2e-11 70.1 46 76.1
Thhalv10026968m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 1.2e-10 69.7 65 58.5
MD14G1134500 Malus domestica HOM05D003086 ORTHO05D003347 1.2e-10 69.7 78 52.6
Lalb_Chr05g0223911 Lupinus albus HOM05D003086 ORTHO05D003347 1.6e-10 69.3 90 50.0
AT4G10810 Arabidopsis thaliana HOM05D003086 ORTHO05D003347 2.7e-10 68.6 64 56.2
COL.COLO4_10758 Corchorus olitorius HOM05D003086 ORTHO05D003347 4.6e-10 67.8 66 53.0
Glyma.05G219700 Glycine max HOM05D003086 ORTHO05D003347 4.6e-10 67.8 46 73.9
Glyma.08G026000 Glycine max HOM05D003086 ORTHO05D003347 4.6e-10 67.8 46 73.9
Carub.0006s2958 Capsella rubella HOM05D003086 ORTHO05D003347 1.0e-09 66.6 78 50.0
CsaV3_5G002030 Cucumis sativus L. HOM05D003086 ORTHO05D003347 1.0e-09 66.6 64 57.8
HanXRQChr08g0225161 Helianthus annuus HOM05D003086 ORTHO05D003347 1.0e-09 66.6 81 48.1
PGR042G2701 Punica granatum HOM05D003086 ORTHO05D003347 1.3e-09 66.2 88 51.1
CiPaw.11G115700 Carya illinoinensis HOM05D003086 ORTHO05D003347 1.7e-09 65.9 47 66.0
Lj4g0018385 Lotus japonicus HOM05D003086 ORTHO05D003347 3.0e-09 65.1 42 76.2
Lalb_Chr09g0332101 Lupinus albus HOM05D003086 ORTHO05D003347 3.9e-09 64.7 45 71.1
Nn3g18930 Nelumbo nucifera HOM05D003086 ORTHO05D003347 3.9e-09 64.7 79 49.4
THA.LOC104813050 Tarenaya hassleriana HOM05D003086 ORTHO05D003347 3.9e-09 64.7 65 53.8
Atru.chr9.1962 Acer truncatum HOM05D003086 ORTHO05D003347 5.1e-09 64.3 63 57.1
Medtr8g099965 Medicago truncatula HOM05D003086 ORTHO05D003347 5.1e-09 64.3 85 44.7
Hma1.2p1_0591F.1_g185160 Hydrangea macrophylla HOM05D003086 ORTHO05D003347 6.6e-09 63.9 79 44.3
Potri.003G143800 Populus trichocarpa HOM05D003086 ORTHO05D003347 6.6e-09 63.9 94 52.1
THA.LOC109116607 Tarenaya hassleriana HOM05D003086 ORTHO05D003347 8.7e-09 63.5 53 62.3
TPR.G20234 Trifolium pratense HOM05D003086 ORTHO05D003347 1.5e-08 62.8 60 50.0
TPR.G3409 Trifolium pratense HOM05D003086 ORTHO05D003347 1.9e-08 62.4 78 48.7
Psat4g162600 Pisum sativum HOM05D003086 ORTHO05D003347 2.5e-08 62.0 65 47.7
TAR375G0287 Trochodendron aralioides HOM05D003086 ORTHO05D003347 2.5e-08 62.0 77 46.8
BcaC09g50920 Brassica carinata HOM05D003086 ORTHO05D003347 3.3e-08 61.6 66 48.5
C01p19250 Brassica napus HOM05D003086 ORTHO05D003347 3.3e-08 61.6 66 48.5
BolC1t01850H Brassica oleracea HOM05D003086 ORTHO05D003347 3.3e-08 61.6 66 48.5
BraA01t01474Z Brassica rapa HOM05D003086 ORTHO05D003347 3.3e-08 61.6 66 48.5
BraA08t32861Z Brassica rapa HOM05D003086 ORTHO05D003347 3.3e-08 61.6 66 48.5
Actinidia20253 Actinidia chinensis HOM05D003086 ORTHO05D003347 4.3e-08 61.2 73 46.6
DCAR_008957 Daucus carota HOM05D003086 ORTHO05D003347 4.3e-08 61.2 62 51.6
ECA233G0233 Erigeron canadensis HOM05D003086 ORTHO05D003347 5.6e-08 60.8 83 44.6
CSS0006972 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 7.3e-08 60.5 68 47.1
Ciclev10023176m.g Citrus clementina HOM05D003086 ORTHO05D003347 7.3e-08 60.5 73 53.4
SHI06941 Sapria himalayana HOM05D003472 ORTHO05D004200 7.3e-08 60.5 75 48.0
Haze_15678 Corylus avellana HOM05D003086 ORTHO05D003347 9.6e-08 60.1 74 43.2
CSS0010966 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 1.2e-07 59.7 72 47.2
CiPaw.05G227500 Carya illinoinensis HOM05D003086 ORTHO05D003347 1.2e-07 59.7 53 54.7
Sabra02G0139700 Salix brachista HOM05D003086 ORTHO05D003347 1.2e-07 59.7 63 52.4
HPP92_025720 Vanilla planifolia HOM05D003086 ORTHO05D003347 1.2e-07 59.7 78 43.6
Phvul.002G328908 Phaseolus vulgaris HOM05D003086 ORTHO05D003347 1.6e-07 59.3 40 75.0
Sed0027058 Sechium edule HOM05D003086 ORTHO05D003347 1.6e-07 59.3 39 71.8
TAR629G1883 Trochodendron aralioides HOM05D003086 ORTHO05D003347 1.6e-07 59.3 57 52.6
CANSAT21G1677 Cannabis sativa HOM05D003086 ORTHO05D003347 2.1e-07 58.9 90 42.2
Cfa003782 Carpinus fangiana HOM05D003086 ORTHO05D003347 2.1e-07 58.9 79 41.8
Atru.chr5.701 Acer truncatum HOM05D003086 ORTHO05D003347 2.8e-07 58.5 80 43.8
Ca_23518_v3 Cicer arietinum L. HOM05D003086 ORTHO05D003347 2.8e-07 58.5 62 48.4
Thhalv10015091m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 2.8e-07 58.5 58 53.4
Rhsim07G0002900 Rhododendron simsii HOM05D003086 ORTHO05D003347 2.8e-07 58.5 83 41.0
Rhsim09G0207000 Rhododendron simsii HOM05D003086 ORTHO05D003347 2.8e-07 58.5 80 42.5
Sp6g06680 Schrenkiella parvula HOM05D003086 ORTHO05D003347 2.8e-07 58.5 56 55.4
Actinidia07974 Actinidia chinensis HOM05D003086 ORTHO05D003347 3.6e-07 58.2 73 43.8
Aqoxy5G04301 Aquilegia oxysepala HOM05D003086 ORTHO05D003347 3.6e-07 58.2 59 49.2
Aqoxy7G00049 Aquilegia oxysepala HOM05D003086 ORTHO05D003347 3.6e-07 58.2 77 41.6
Aa31LG9G11270 Aethionema arabicum HOM05D003086 ORTHO05D003347 6.2e-07 57.4 67 49.3
BcaNung01108 Brassica carinata HOM05D003086 ORTHO05D003347 6.2e-07 57.4 66 45.5
Thhalv10029101m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 6.2e-07 57.4 67 49.3
Gorai.007G110300 Gossypium raimondii HOM05D003086 ORTHO05D003347 6.2e-07 57.4 69 43.5
Medtr8g027380 Medicago truncatula HOM05D003086 ORTHO05D003347 6.2e-07 57.4 64 46.9
BcaNung05697 Brassica carinata HOM05D003086 ORTHO05D003347 8.1e-07 57.0 65 52.3
Gohir.A11G098500 Gossypium hirsutum HOM05D003086 ORTHO05D003347 8.1e-07 57.0 66 45.5
Aa31LG2G1580 Aethionema arabicum HOM05D000001 ORTHO05D000003 1.1e-06 56.6 73 47.9
BcaC05g27913 Brassica carinata HOM05D003086 ORTHO05D003347 1.1e-06 56.6 65 50.8
C05p39210 Brassica napus HOM05D003086 ORTHO05D003347 1.1e-06 56.6 65 50.8
BolC5t32654H Brassica oleracea HOM05D003086 ORTHO05D003347 1.1e-06 56.6 65 50.8
Potri.002G173700 Populus trichocarpa HOM05D003086 ORTHO05D003347 1.1e-06 56.6 63 50.8
AT1G64584 Arabidopsis thaliana HOM05D003086 ORTHO05D003347 1.4e-06 56.2 70 45.7
C09p35950 Brassica napus HOM05D003086 ORTHO05D003347 1.4e-06 56.2 76 47.4
BolC9t56428H Brassica oleracea HOM05D003086 ORTHO05D003347 1.4e-06 56.2 76 47.4
Duzib084G0307 Durio zibethinus HOM05D003086 ORTHO05D003347 1.4e-06 56.2 59 49.2
Migut.B01892 Erythranthe guttata HOM05D003086 ORTHO05D003347 1.4e-06 56.2 79 43.0
BcaNung06471 Brassica carinata HOM05D003086 ORTHO05D003347 1.8e-06 55.8 62 51.6
C07p53320 Brassica napus HOM05D003086 ORTHO05D003347 1.8e-06 55.8 62 51.6
BolC7t45826H Brassica oleracea HOM05D003086 ORTHO05D003347 1.8e-06 55.8 62 51.6
Cpa.g.sc96.51 Carica papaya HOM05D003086 ORTHO05D003347 1.8e-06 55.8 63 47.6
Lsat_1_v5_gn_4_30961 Lactuca sativa HOM05D003086 ORTHO05D003347 1.8e-06 55.8 74 44.6
TAR636G1396 Trochodendron aralioides HOM05D003086 ORTHO05D003347 1.8e-06 55.8 77 44.2
BcaB05g23876 Brassica carinata HOM05D003086 ORTHO05D003347 2.4e-06 55.5 64 48.4
Ciclev10033638m.g Citrus clementina HOM05D003086 ORTHO05D003347 2.4e-06 55.5 63 54.0
Gohir.D11G103100 Gossypium hirsutum HOM05D003086 ORTHO05D003347 2.4e-06 55.5 68 42.6
Thecc.01G339800 Theobroma cacao HOM05D003086 ORTHO05D003347 2.4e-06 55.5 69 43.5
Phvul.010G115200 Phaseolus vulgaris HOM05D003086 ORTHO05D003347 3.1e-06 55.1 67 43.3
Sc23g0002030 Simmondsia chinensis HOM05D003086 ORTHO05D003347 3.1e-06 55.1 46 56.5
Glyma.07G054300 Glycine max HOM05D003086 ORTHO05D003347 4.0e-06 54.7 61 45.9
Gohir.A08G124800 Gossypium hirsutum HOM05D003086 ORTHO05D003347 4.0e-06 54.7 68 44.1
PGR142G1468 Punica granatum HOM05D003086 ORTHO05D003347 4.0e-06 54.7 83 42.2
QL09p037005 Quercus lobata HOM05D003086 ORTHO05D003347 4.0e-06 54.7 70 44.3
HPP92_013003 Vanilla planifolia HOM05D003086 ORTHO05D003347 4.0e-06 54.7 77 40.3
AT4G24026 Arabidopsis thaliana HOM05D003086 ORTHO05D003347 5.2e-06 54.3 67 46.3
Gorai.004G151100 Gossypium raimondii HOM05D003086 ORTHO05D003347 5.2e-06 54.3 74 40.5
Lsat_1_v5_gn_7_740 Lactuca sativa HOM05D003086 ORTHO05D003347 5.2e-06 54.3 79 41.8
Lalb_Chr04g0254361 Lupinus albus HOM05D003086 ORTHO05D003347 5.2e-06 54.3 50 50.0
Prupe.2G314400 Prunus persica HOM05D003086 ORTHO05D003347 5.2e-06 54.3 95 38.9
AL7G29250 Arabidopsis lyrata HOM05D003086 ORTHO05D003347 6.9e-06 53.9 68 45.6
CsaV3_5G000270 Cucumis sativus L. HOM05D003086 ORTHO05D003347 6.9e-06 53.9 85 40.0
Migut.F00191 Erythranthe guttata HOM05D003086 ORTHO05D003347 6.9e-06 53.9 62 51.6
QL08p045815 Quercus lobata HOM05D003086 ORTHO05D003347 6.9e-06 53.9 61 45.9
Carub.0007s1706 Capsella rubella HOM05D003086 ORTHO05D003347 9.0e-06 53.5 64 48.4
Thecc.03G202500 Theobroma cacao HOM05D003086 ORTHO05D003347 9.0e-06 53.5 74 43.2


User provided reference genes

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