Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G2679 Fragaria x ananassa HOM05D003990 ORTHO05D004925 3.0e-75 285.0 137 100.0
FAN13G1570 Fragaria x ananassa HOM05D003990 ORTHO05D004925 5.8e-71 270.8 137 94.9
RcHm_v2.0_Chr7g0186781 Rosa chinensis HOM05D003990 ORTHO05D004925 8.1e-65 250.4 137 90.5
FvH4_5g11021 Fragaria vesca HOM05D003990 ORTHO05D004925 2.6e-63 245.4 135 89.6
Prupe.5G128500 Prunus persica HOM05D003990 ORTHO05D004925 5.6e-58 227.6 137 78.1
Manes.11G125600 Manihot esculenta HOM05D003990 ORTHO05D004925 8.2e-57 223.8 138 76.1
MD06G1117400 Malus domestica HOM05D003990 ORTHO05D004925 1.1e-56 223.4 137 75.9
Cpa.g.sc175.15 Carica papaya HOM05D003990 ORTHO05D004925 1.4e-56 223.0 138 77.5
Cfa011935 Carpinus fangiana HOM05D003990 ORTHO05D004925 2.6e-55 218.8 137 75.2
Sabra03G0105900 Salix brachista HOM05D003990 ORTHO05D004925 6.5e-54 214.2 137 75.9
CiPaw.12G078400 Carya illinoinensis HOM05D003990 ORTHO05D004925 1.4e-53 213.0 144 70.8
Sp6g06750 Schrenkiella parvula HOM05D003990 ORTHO05D004925 5.5e-53 211.1 140 73.6
AT4G10750 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 7.1e-53 210.7 140 73.6
Dinv38683 Davidia involucrata HOM05D003990 ORTHO05D001284 7.1e-53 210.7 137 73.0
Lj8A201T86 Lonicera japonica HOM05D003990 ORTHO05D004925 7.1e-53 210.7 141 72.3
Carub.0006s2953 Capsella rubella HOM05D003990 ORTHO05D004925 9.3e-53 210.3 140 72.1
Thhalv10029450m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 1.2e-52 209.9 140 72.9
Potri.003G145700 Populus trichocarpa HOM05D003990 ORTHO05D004925 1.2e-52 209.9 137 74.5
THA.LOC104813054 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 1.2e-52 209.9 140 72.9
AL6G44800 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 1.6e-52 209.5 140 72.9
BraA09t38413Z Brassica rapa HOM05D003990 ORTHO05D004925 2.7e-52 208.8 140 72.9
CANSAT21G0847 Cannabis sativa HOM05D003990 ORTHO05D004925 2.7e-52 208.8 145 69.0
BcaB01g01511 Brassica carinata HOM05D003990 ORTHO05D004925 3.5e-52 208.4 140 72.1
QL02p029212 Quercus lobata HOM05D003990 ORTHO05D004925 6.0e-52 207.6 137 73.0
TWI60G1311 Tripterygium wilfordii HOM05D003990 ORTHO05D004925 6.0e-52 207.6 139 75.5
BcaC04g21069 Brassica carinata HOM05D003990 ORTHO05D004925 7.9e-52 207.2 140 72.1
C09p36050 Brassica napus HOM05D003990 ORTHO05D004925 7.9e-52 207.2 140 72.1
BolC9t56444H Brassica oleracea HOM05D003990 ORTHO05D004925 7.9e-52 207.2 140 72.1
Oeu022039.1 Olea europaea HOM05D003990 ORTHO05D004925 1.0e-51 206.8 138 70.3
TAR629G1984 Trochodendron aralioides HOM05D003990 ORTHO05D004925 1.0e-51 206.8 138 73.9
CARHR255860 Cardamine hirsuta HOM05D003990 ORTHO05D004925 1.3e-51 206.5 140 72.1
A09p28480 Brassica napus HOM05D003990 ORTHO05D004925 3.0e-51 205.3 140 70.7
Atru.chr9.1910 Acer truncatum HOM05D003990 ORTHO05D004925 3.9e-51 204.9 139 72.7
Aqoxy7G00029 Aquilegia oxysepala HOM05D003990 ORTHO05D004925 8.7e-51 203.8 141 70.9
Aa31LG9G11320 Aethionema arabicum HOM05D003990 ORTHO05D004925 1.9e-50 202.6 140 70.0
CSS0021441 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 1.9e-50 202.6 145 70.3
Duzib205G1059 Durio zibethinus HOM05D003990 ORTHO05D004925 2.5e-50 202.2 137 71.5
CSS0010282 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 3.3e-50 201.8 147 69.4
Lalb_Chr17g0338551 Lupinus albus HOM05D003990 ORTHO05D004925 5.7e-50 201.1 140 72.9
Sc01g0010590 Simmondsia chinensis HOM05D003990 ORTHO05D004925 7.4e-50 200.7 140 70.0
Ciclev10020878m.g Citrus clementina HOM05D003990 ORTHO05D004925 9.7e-50 200.3 142 69.7
Rhsim02G0251300 Rhododendron simsii HOM05D003990 ORTHO05D004925 1.3e-49 199.9 144 70.1
CAN.G792.28 Capsicum annuum HOM05D003990 ORTHO05D004925 3.7e-49 198.4 137 67.9
Solyc08g008530.1 Solanum lycopersicum HOM05D003990 ORTHO05D004925 4.8e-49 198.0 137 67.2
Hma1.2p1_0212F.1_g090230 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 6.3e-49 197.6 147 67.3
Sopen08g004380 Solanum pennellii HOM05D003990 ORTHO05D004925 6.3e-49 197.6 137 67.2
Eucgr.D01688 Eucalyptus grandis HOM05D003990 ORTHO05D004925 1.1e-48 196.8 140 70.7
COL.COLO4_10785 Corchorus olitorius HOM05D003990 ORTHO05D004925 1.4e-48 196.4 137 70.8
HanXRQChr06g0166861 Helianthus annuus HOM05D003990 ORTHO05D004925 2.4e-48 195.7 142 67.6
Haze_14077 Corylus avellana HOM05D003990 ORTHO05D004925 3.1e-48 195.3 124 71.0
PGSC0003DMG400005851 Solanum tuberosum HOM05D003990 ORTHO05D004925 3.1e-48 195.3 139 66.2
Gorai.003G075400 Gossypium raimondii HOM05D003990 ORTHO05D004925 6.9e-48 194.1 137 69.3
Gohir.A02G097800 Gossypium hirsutum HOM05D003990 ORTHO05D004925 9.0e-48 193.7 137 68.6
Lsat_1_v5_gn_3_13681 Lactuca sativa HOM05D003990 ORTHO05D004925 9.0e-48 193.7 142 66.9
Gohir.D03G086700 Gossypium hirsutum HOM05D003990 ORTHO05D004925 1.2e-47 193.4 137 68.6
Peaxi162Scf00102g01878 Petunia axillaris HOM05D003990 ORTHO05D000951 1.5e-47 193.0 137 67.9
ECA246G0738 Erigeron canadensis HOM05D003273 ORTHO05D004023 2.0e-47 192.6 141 65.2
AUR62007043 Chenopodium quinoa HOM05D003990 ORTHO05D004925 1.7e-46 189.5 146 65.1
DCAR_009092 Daucus carota HOM05D003990 ORTHO05D004925 2.2e-46 189.1 138 65.9
Thecc.03G222400 Theobroma cacao HOM05D003990 ORTHO05D004925 2.2e-46 189.1 137 66.4
Cc08_g16660 Coffea canephora HOM05D003990 ORTHO05D004925 2.9e-46 188.7 142 66.2
TPR.G36963 Trifolium pratense HOM05D003990 ORTHO05D004925 2.9e-46 188.7 139 69.1
Medtr1g031790 Medicago truncatula HOM05D003990 ORTHO05D004925 5.0e-46 188.0 139 71.2
Ca_12579_v3 Cicer arietinum L. HOM05D003990 ORTHO05D004925 1.4e-45 186.4 139 66.9
AUR62019907 Chenopodium quinoa HOM05D003990 ORTHO05D004925 3.2e-45 185.3 145 64.8
PSO384G4439 Papaver somniferum HOM05D003990 ORTHO05D004925 4.2e-45 184.9 146 64.4
Lj2g0026928 Lotus japonicus HOM05D003990 ORTHO05D004925 9.4e-45 183.7 150 64.0
Nitab4.5_0000673g0130 Nicotiana tabacum HOM05D003990 ORTHO05D004925 9.4e-45 183.7 134 61.9
MELO3C013779.2 Cucumis melo HOM05D003990 ORTHO05D004925 4.6e-44 181.4 143 60.1
Nitab4.5_0001962g0040 Nicotiana tabacum HOM05D003990 ORTHO05D004925 6.1e-44 181.0 115 71.3
VMungo1215G2928 Vigna mungo HOM05D003990 ORTHO05D004925 6.1e-44 181.0 139 66.2
CsaV3_3G000920 Cucumis sativus L. HOM05D003990 ORTHO05D004925 1.0e-43 180.3 143 60.1
PSO135G0880 Papaver somniferum HOM05D003990 ORTHO05D004925 1.4e-43 179.9 146 61.6
MSTRG.13719 Avicennia marina HOM05D003990 ORTHO05D004925 3.9e-43 178.3 137 62.8
MBI12_g30966_MAGBIO Magnolia biondii HOM05D003990 ORTHO05D004925 5.1e-43 177.9 137 63.5
Phvul.003G021600 Phaseolus vulgaris HOM05D003990 ORTHO05D004925 5.1e-43 177.9 136 66.2
EL10Ac5g12450 Beta vulgaris HOM05D003990 ORTHO05D004925 1.5e-42 176.4 149 59.7
Psat6g044760 Pisum sativum HOM05D003990 ORTHO05D004925 3.3e-42 175.3 140 62.1
CDE04G2232 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 7.4e-42 174.1 134 63.4
Sed0016376 Sechium edule HOM05D003990 ORTHO05D004925 3.7e-41 171.8 141 59.6
unitig_52.g17196 Utricularia gibba HOM05D003990 ORTHO05D004925 8.2e-41 170.6 137 63.5
Nn1g00366 Nelumbo nucifera HOM05D003990 ORTHO05D004925 1.8e-40 169.5 139 61.9
Ah.12g053140 Amaranthus hybridus HOM05D003990 ORTHO05D004925 4.1e-40 168.3 141 60.3
ATR0620G013 Amborella trichopoda HOM05D003990 ORTHO05D004925 5.5e-37 157.9 138 60.9
CAN.G479.14 Capsicum annuum HOM05D003990 ORTHO05D004925 7.2e-37 157.5 126 58.7
CiPaw.11G113600 Carya illinoinensis HOM05D003990 ORTHO05D004925 9.4e-37 157.1 118 64.4
HPP92_008886 Vanilla planifolia HOM05D003990 ORTHO05D004925 1.2e-36 156.8 151 55.6
Cfa011937 Carpinus fangiana HOM05D003990 ORTHO05D004925 1.4e-35 153.3 122 65.6
Duzib084G0313 Durio zibethinus HOM05D003990 ORTHO05D004925 2.3e-35 152.5 112 65.2
Oeu022040.1 Olea europaea HOM05D003990 ORTHO05D004925 8.8e-35 150.6 119 58.8
Haze_09152 Corylus avellana HOM05D003990 ORTHO05D004925 1.5e-34 149.8 118 63.6
Os09g0529900 Oryza sativa ssp. japonica HOM05D003990 ORTHO05D004925 3.3e-34 148.7 147 53.7
CDE07G1159 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 4.4e-34 148.3 135 59.3
Thhalv10026820m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 1.7e-33 146.4 112 60.7
Potri.001G084900 Populus trichocarpa HOM05D003990 ORTHO05D004925 3.7e-33 145.2 102 68.6
QL02p029171 Quercus lobata HOM05D003990 ORTHO05D004925 4.8e-33 144.8 114 59.6
Zm00001eb103220 Zea mays HOM05D003990 ORTHO05D004925 4.8e-33 144.8 150 50.0
BcaNung01112 Brassica carinata HOM05D003990 ORTHO05D004925 6.3e-33 144.4 109 63.3
BcaC09g50915 Brassica carinata HOM05D003990 ORTHO05D004925 8.2e-33 144.1 113 58.4
THA.LOC104815209 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 1.4e-32 143.3 114 57.9
A01p15340 Brassica napus HOM05D003990 ORTHO05D004925 3.1e-32 142.1 112 58.0
BolC1t01855H Brassica oleracea HOM05D003990 ORTHO05D004925 3.1e-32 142.1 112 58.0
BraA01t01478Z Brassica rapa HOM05D003990 ORTHO05D004925 3.1e-32 142.1 112 58.0
BraA01t01479Z Brassica rapa HOM05D003990 ORTHO05D004925 5.3e-32 141.4 116 56.9
CARHR006280 Cardamine hirsuta HOM05D003990 ORTHO05D004925 5.3e-32 141.4 112 58.9
Aa31LG6G7280 Aethionema arabicum HOM05D003990 ORTHO05D004925 1.2e-31 140.2 112 57.1
SEGI_30656 Sequoiadendron giganteum HOM05D003990 ORTHO05D004925 1.2e-31 140.2 112 60.7
C01p19290 Brassica napus HOM05D003990 ORTHO05D004925 1.5e-31 139.8 112 57.1
BolC1t01856H Brassica oleracea HOM05D003990 ORTHO05D004925 1.5e-31 139.8 117 56.4
A01p15350 Brassica napus HOM05D003990 ORTHO05D004925 5.9e-31 137.9 116 56.0
BcaC09g50914 Brassica carinata HOM05D003990 ORTHO05D004925 1.0e-30 137.1 117 55.6
Carub.0007s1702 Capsella rubella HOM05D003990 ORTHO05D004925 1.3e-30 136.7 115 56.5
QL02p029158 Quercus lobata HOM05D003990 ORTHO05D004925 1.3e-30 136.7 115 59.1
Sc01g0010580 Simmondsia chinensis HOM05D003990 ORTHO05D004925 1.3e-30 136.7 113 57.5
COL.COLO4_10784 Corchorus olitorius HOM05D003990 ORTHO05D004925 1.7e-30 136.3 112 58.0
AL7G29210 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 2.2e-30 136.0 112 56.2
C01p19300 Brassica napus HOM05D003990 ORTHO05D004925 2.9e-30 135.6 117 55.6
AT4G24080 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 6.5e-30 134.4 112 55.4
CARHR231480 Cardamine hirsuta HOM05D003990 ORTHO05D004925 1.1e-29 133.7 112 55.4
AUR62019906 Chenopodium quinoa HOM05D003990 ORTHO05D004925 3.2e-29 132.1 116 52.6
AUR62007042 Chenopodium quinoa HOM05D003990 ORTHO05D004925 9.4e-29 130.6 116 52.6
Ah.12g053130 Amaranthus hybridus HOM05D003990 ORTHO05D004925 2.7e-28 129.0 116 50.0
EL10Ac5g12452 Beta vulgaris HOM05D003990 ORTHO05D004925 1.0e-27 127.1 116 51.7
QL02p029191 Quercus lobata HOM05D003990 ORTHO05D004925 1.4e-27 126.7 109 57.8
arahy.Tifrunner.gnm1.ann1.LQZ0GD Arachis hypogaea HOM05D003990 ORTHO05D004925 3.9e-27 125.2 121 51.2
arahy.Tifrunner.gnm1.ann1.ZCAA4H Arachis hypogaea HOM05D003990 ORTHO05D004925 3.9e-27 125.2 121 51.2
vmacro11510 Vaccinium macrocarpon HOM05D003990 ORTHO05D004925 1.5e-26 123.2 105 64.8
Thhalv10027122m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 1.7e-25 119.8 113 50.4
CARHR006270 Cardamine hirsuta HOM05D003990 ORTHO05D004925 3.7e-25 118.6 111 51.4
Thhalv10027505m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 1.1e-24 117.1 110 50.0
Duzib068G0872 Durio zibethinus HOM05D003990 ORTHO05D004925 4.1e-24 115.2 87 62.1
AagrBONN_evm.TU.Sc2ySwM_117.985 Anthoceros agrestis HOM05D003990 ORTHO05D004925 2.2e-22 109.4 110 50.9
arahy.Tifrunner.gnm1.ann1.3SR05H Arachis hypogaea HOM05D003990 ORTHO05D004925 2.9e-22 109.0 121 45.5
arahy.Tifrunner.gnm1.ann1.UPJ447 Arachis hypogaea HOM05D003990 ORTHO05D004925 2.9e-22 109.0 121 45.5
arahy.Tifrunner.gnm1.ann1.IT3SMZ Arachis hypogaea HOM05D003990 ORTHO05D004925 2.5e-21 105.9 121 43.0
Mapoly0141s0022 Marchantia polymorpha HOM05D003990 ORTHO05D004925 2.5e-21 105.9 110 51.8
arahy.Tifrunner.gnm1.ann1.Y0R09G Arachis hypogaea HOM05D003990 ORTHO05D004925 3.2e-21 105.5 122 42.6
Pp3c17_4700 Physcomitrium patens HOM05D003990 ORTHO05D004925 3.2e-21 105.5 110 48.2
COL.COLO4_10783 Corchorus olitorius HOM05D003990 ORTHO05D004925 2.7e-20 102.4 87 58.6
Migut.E00635 Erythranthe guttata HOM05D003990 ORTHO05D004925 3.6e-20 102.1 90 60.0
arahy.Tifrunner.gnm1.ann1.VJUY72 Arachis hypogaea HOM05D003990 ORTHO05D004925 4.0e-19 98.6 113 46.9
arahy.Tifrunner.gnm1.ann1.E0UK9T Arachis hypogaea HOM05D003990 ORTHO05D004925 5.2e-19 98.2 113 46.9
Sc16g0011220 Simmondsia chinensis HOM05D003990 ORTHO05D004925 8.3e-17 90.9 93 48.4
EL10Ac6g14266 Beta vulgaris HOM05D003990 ORTHO05D004925 2.0e-15 86.3 69 55.1
Hma1.2p1_0212F.1_g090250 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 5.9e-15 84.7 60 66.7
Hma1.2p1_0440F.1_g153760 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 1.5e-13 80.1 145 36.6
Zm00001eb207470 Zea mays HOM05D003990 ORTHO05D004925 1.9e-13 79.7 83 51.8
AT4G24070 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 3.6e-12 75.5 63 54.0
Zm00001eb366680 Zea mays HOM05D003990 ORTHO05D004925 1.0e-11 73.9 80 51.2
PRCOL_00003301 Prasinoderma coloniale HOM05D003990 ORTHO05D004925 2.3e-11 72.8 103 40.8
VMungo0647G2082 Vigna mungo HOM05D003990 ORTHO05D004925 3.0e-11 72.4 82 50.0
Zm00001eb314200 Zea mays HOM05D003990 ORTHO05D004925 6.8e-11 71.2 74 44.6
arahy.Tifrunner.gnm1.ann1.QV8INP Arachis hypogaea HOM05D003990 ORTHO05D004925 1.5e-10 70.1 117 38.5
arahy.Tifrunner.gnm1.ann1.UE00R2 Arachis hypogaea HOM05D003990 ORTHO05D004925 3.4e-10 68.9 117 38.5
QL02p029160 Quercus lobata HOM05D003990 ORTHO05D004925 3.4e-10 68.9 64 53.1
Migut.O00797 Erythranthe guttata HOM05D003990 ORTHO05D004925 9.1e-08 60.8 36 75.0


User provided reference genes

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