Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G2677 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.1e-109 399.8 189 100.0
FAN08G3218 Fragaria x ananassa HOM05D004561 ORTHO05D005315 9.7e-93 343.6 187 89.8
FAN18G3337 Fragaria x ananassa HOM05D004561 ORTHO05D005315 8.2e-92 340.5 187 89.3
FAN13G2292 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.1e-91 340.1 186 89.2
FvH4_7g18930 Fragaria vesca HOM05D004561 ORTHO05D005315 2.4e-91 339.0 187 88.8
FAN06G3856 Fragaria x ananassa HOM05D004561 ORTHO05D005315 2.4e-91 339.0 187 88.8
FvH4_5g18940 Fragaria vesca HOM05D004561 ORTHO05D005315 1.3e-89 333.2 187 86.6
FAN06G2746 Fragaria x ananassa HOM05D004561 ORTHO05D005315 3.6e-87 325.1 179 88.3
FAN04G2378 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.2e-85 320.1 175 89.1
RcHm_v2.0_Chr7g0203331 Rosa chinensis HOM05D004561 ORTHO05D005315 2.7e-82 308.9 187 79.7
Prupe.5G069900 Prunus persica HOM05D004561 ORTHO05D005315 7.0e-75 284.3 187 73.3
MD16G1270300 Malus domestica HOM05D004561 ORTHO05D005315 6.1e-71 271.2 185 70.3
CiPaw.15G149700 Carya illinoinensis HOM05D004561 ORTHO05D005315 5.8e-69 264.6 186 68.8
QL09p040874 Quercus lobata HOM05D004561 ORTHO05D005315 2.0e-66 256.1 186 66.7
Eucgr.B03172 Eucalyptus grandis HOM05D004561 ORTHO05D005315 7.8e-66 254.2 185 62.2
Potri.012G041700 Populus trichocarpa HOM05D004561 ORTHO05D005315 7.8e-66 254.2 183 65.6
Dinv14864 Davidia involucrata HOM05D004561 ORTHO05D005315 2.3e-65 252.7 183 66.7
Hma1.2p1_0018F.1_g012650 Hydrangea macrophylla HOM05D004561 ORTHO05D005315 3.9e-65 251.9 185 62.7
CSS0045511 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 3.3e-64 248.8 184 64.1
Sabra12G0028700 Salix brachista HOM05D004561 ORTHO05D005315 5.6e-64 248.1 183 64.5
Thecc.01G124300 Theobroma cacao HOM05D004561 ORTHO05D005315 5.6e-64 248.1 187 64.7
GSVIVG01028605001 Vitis vinifera HOM05D004561 ORTHO05D005315 2.8e-63 245.7 184 65.8
COL.COLO4_13996 Corchorus olitorius HOM05D004561 ORTHO05D005315 8.0e-63 244.2 187 64.7
Lj1A1185G61 Lonicera japonica HOM05D004561 ORTHO05D005315 4.0e-62 241.9 182 62.6
Lalb_Chr12g0208781 Lupinus albus HOM05D004561 ORTHO05D005315 1.5e-61 240.0 187 61.5
TPR.G30372 Trifolium pratense HOM05D004561 ORTHO05D005315 1.5e-61 240.0 184 62.5
Psat1g047920 Pisum sativum HOM05D004561 ORTHO05D005315 4.4e-61 238.4 184 63.6
TWI15G0666 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 7.5e-61 237.7 185 60.0
Phvul.002G198500 Phaseolus vulgaris HOM05D004561 ORTHO05D005315 2.2e-60 236.1 185 62.7
Lj4g0004659 Lotus japonicus HOM05D004561 ORTHO05D005315 2.9e-60 235.7 187 60.4
Medtr4g094538 Medicago truncatula HOM05D004561 ORTHO05D005315 4.9e-60 235.0 184 60.9
TAR628G1415 Trochodendron aralioides HOM05D004561 ORTHO05D005315 6.4e-60 234.6 184 62.0
Atru.chr13.142 Acer truncatum HOM05D004561 ORTHO05D005315 8.3e-60 234.2 182 62.1
Glyma.08G081300 Glycine max HOM05D004561 ORTHO05D005315 8.3e-60 234.2 187 62.0
TWI81G0190 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 1.1e-59 233.8 185 59.5
Gorai.012G033300 Gossypium raimondii HOM05D004561 ORTHO05D005315 1.4e-59 233.4 187 61.0
HanXRQChr15g0480201 Helianthus annuus HOM05D004561 ORTHO05D005315 1.4e-59 233.4 182 59.9
Gohir.A05G386400 Gossypium hirsutum HOM05D004561 ORTHO05D005315 1.9e-59 233.0 187 61.0
VMungo0251G0557 Vigna mungo HOM05D004561 ORTHO05D005315 2.4e-59 232.6 186 60.8
Migut.I00621 Erythranthe guttata HOM05D004561 ORTHO05D005315 3.2e-59 232.3 184 58.7
Gohir.D04G023500 Gossypium hirsutum HOM05D004561 ORTHO05D005315 7.0e-59 231.1 187 60.4
Manes.08G062966 Manihot esculenta HOM05D004561 ORTHO05D005315 9.2e-59 230.7 185 60.5
Sed0015683 Sechium edule HOM05D004561 ORTHO05D005315 9.2e-59 230.7 182 60.4
Glyma.05G126500 Glycine max HOM05D004561 ORTHO05D005315 1.2e-58 230.3 185 61.1
Sc18g0002470 Simmondsia chinensis HOM05D004561 ORTHO05D005315 6.0e-58 228.0 182 57.7
CsaV3_1G002780 Cucumis sativus L. HOM05D004561 ORTHO05D005315 1.0e-57 227.3 184 58.7
Ciclev10002226m.g Citrus clementina HOM05D004561 ORTHO05D005315 1.3e-57 226.9 182 58.8
Hund26218 Selenicereus undatus HOM05D004561 ORTHO05D005315 3.0e-57 225.7 185 58.4
Solyc08g074360.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 3.9e-57 225.3 184 57.1
PGSC0003DMG400009224 Solanum tuberosum HOM05D004561 ORTHO05D005315 6.6e-57 224.6 184 57.1
Sopen08g023020 Solanum pennellii HOM05D004561 ORTHO05D005315 1.9e-56 223.0 185 56.8
CAN.G370.25 Capsicum annuum HOM05D004561 ORTHO05D005315 2.5e-56 222.6 182 57.1
Sopen11g009350 Solanum pennellii HOM05D004561 ORTHO05D005315 3.3e-56 222.2 184 56.5
BraA07t30043Z Brassica rapa HOM05D004561 ORTHO05D005315 5.6e-56 221.5 182 57.7
MSTRG.22847 Avicennia marina HOM05D004561 ORTHO05D005315 7.3e-56 221.1 184 56.5
MELO3C017214.2 Cucumis melo HOM05D004561 ORTHO05D005315 7.3e-56 221.1 184 57.6
ECA233G0879 Erigeron canadensis HOM05D004561 ORTHO05D005315 7.3e-56 221.1 182 57.1
Oeu031248.3 Olea europaea HOM05D004561 ORTHO05D005315 7.3e-56 221.1 187 56.7
MSTRG.11225 Avicennia marina HOM05D004561 ORTHO05D005315 9.5e-56 220.7 183 56.3
Nn5g27375 Nelumbo nucifera HOM05D004561 ORTHO05D005315 9.5e-56 220.7 190 55.8
AL5G39820 Arabidopsis lyrata HOM05D004561 ORTHO05D005315 2.1e-55 219.5 182 57.7
C06p25150 Brassica napus HOM05D004561 ORTHO05D005315 2.8e-55 219.2 183 57.9
Lsat_1_v5_gn_7_30581 Lactuca sativa HOM05D004561 ORTHO05D005315 2.8e-55 219.2 182 57.7
A07p23920 Brassica napus HOM05D004561 ORTHO05D005315 3.6e-55 218.8 182 57.7
Solyc11g017400.2 Solanum lycopersicum HOM05D004561 ORTHO05D005315 3.6e-55 218.8 184 56.5
BcaB02g07548 Brassica carinata HOM05D004561 ORTHO05D005315 4.7e-55 218.4 182 57.7
Sp5g04590 Schrenkiella parvula HOM05D004561 ORTHO05D005315 6.2e-55 218.0 185 57.8
BcaC08g44900 Brassica carinata HOM05D004561 ORTHO05D005315 8.1e-55 217.6 182 57.7
BolC6t37673H Brassica oleracea HOM05D004561 ORTHO05D005315 1.1e-54 217.2 182 57.7
SalBow3G1851 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.1e-54 217.2 182 56.0
Peaxi162Scf00152g00158 Petunia axillaris HOM05D004561 ORTHO05D005315 2.3e-54 216.1 187 55.6
Cc03_g07430 Coffea canephora HOM05D004561 ORTHO05D005315 3.1e-54 215.7 185 58.4
Aqoxy6G01699 Aquilegia oxysepala HOM05D004561 ORTHO05D005315 5.2e-54 214.9 185 56.2
CARHR168490 Cardamine hirsuta HOM05D004561 ORTHO05D005315 8.9e-54 214.2 185 55.7
Rhsim06G0237000 Rhododendron simsii HOM05D004561 ORTHO05D005315 8.9e-54 214.2 146 64.4
SalBow1G5912 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.2e-53 213.8 182 57.7
AT3G58130 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 1.5e-53 213.4 185 56.2
PSO210G6857 Papaver somniferum HOM05D004561 ORTHO05D005315 1.5e-53 213.4 182 56.0
SGA_v2.0_scaffold37G14646 Striga asiatica HOM05D004561 ORTHO05D005315 3.4e-53 212.2 161 60.2
AT2G27340 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 9.9e-53 210.7 182 56.6
Carub.0005s2498 Capsella rubella HOM05D004561 ORTHO05D005315 1.7e-52 209.9 185 54.1
THA.LOC104822320 Tarenaya hassleriana HOM05D004561 ORTHO05D005315 4.9e-52 208.4 184 56.5
PGSC0003DMG403029595 Solanum tuberosum HOM05D004561 ORTHO05D005315 6.4e-52 208.0 146 63.0
ClCG06G015750 Citrullus lanatus HOM05D000113 ORTHO05D002571 8.3e-52 207.6 144 65.3
Thhalv10002077m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 4.1e-51 205.3 189 55.6
Lj6g0005186 Lotus japonicus HOM05D004561 ORTHO05D005315 4.1e-51 205.3 142 63.4
Nitab4.5_0000422g0080 Nicotiana tabacum HOM05D004561 ORTHO05D005315 4.1e-51 205.3 146 63.7
Peaxi162Scf00310g00711 Petunia axillaris HOM05D004561 ORTHO05D005315 7.1e-51 204.5 146 62.3
vmacro18667 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 7.1e-51 204.5 208 51.9
Zm00001eb433850 Zea mays HOM05D004561 ORTHO05D005315 2.7e-50 202.6 182 51.6
CDE04G2633 Ceratophyllum demersum HOM05D004561 ORTHO05D005315 7.8e-50 201.1 182 50.5
RcHm_v2.0_Chr7g0203411 Rosa chinensis HOM05D004561 ORTHO05D005315 1.0e-49 200.7 184 57.6
C08p33660 Brassica napus HOM05D004561 ORTHO05D005315 1.7e-49 199.9 171 55.0
EL10Ac8g18446 Beta vulgaris HOM05D004561 ORTHO05D005315 2.3e-49 199.5 148 61.5
DCAR_002722 Daucus carota HOM05D004561 ORTHO05D005315 2.3e-49 199.5 145 62.8
Thhalv10002036m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 2.5e-48 196.1 180 55.0
AUR62010959 Chenopodium quinoa HOM05D004561 ORTHO05D005315 4.3e-48 195.3 148 59.5
AUR62007426 Chenopodium quinoa HOM05D004561 ORTHO05D005315 5.6e-48 194.9 148 58.8
AUR62021469 Chenopodium quinoa HOM05D004561 ORTHO05D005315 9.5e-48 194.1 160 57.5
unitig_744.g24647 Utricularia gibba HOM05D004561 ORTHO05D005315 8.1e-47 191.0 190 50.5
BcaC07g40276 Brassica carinata HOM05D004561 ORTHO05D005315 8.9e-46 187.6 160 55.0
ATR0661G441 Amborella trichopoda HOM05D004561 ORTHO05D005315 2.0e-45 186.4 183 51.4
Os04g0678800 Oryza sativa ssp. japonica HOM05D004561 ORTHO05D005315 2.0e-45 186.4 185 51.4
Cpa.g.sc437.1 Carica papaya HOM05D004561 ORTHO05D005315 1.6e-42 176.8 110 70.9
ECA236G3170 Erigeron canadensis HOM05D004561 ORTHO05D005315 8.7e-41 171.0 146 54.1
SHI05351 Sapria himalayana HOM05D004561 ORTHO05D005315 8.7e-41 171.0 188 46.8
Aa31LG10G12840 Aethionema arabicum HOM05D004561 ORTHO05D005315 1.2e-39 167.2 145 54.5
AUR62002652 Chenopodium quinoa HOM05D004561 ORTHO05D005315 1.6e-39 166.8 157 51.0
Carub.0339s0001 Capsella rubella HOM05D004561 ORTHO05D005315 3.6e-39 165.6 146 54.8
Pp3c13_19470 Physcomitrium patens HOM05D004561 ORTHO05D005315 3.1e-38 162.5 192 42.2
MD06G1059000 Malus domestica HOM05D004561 ORTHO05D005315 5.3e-38 161.8 120 65.0
BolC8t50963H Brassica oleracea HOM05D004561 ORTHO05D005315 1.2e-37 160.6 118 59.3
arahy.Tifrunner.gnm1.ann1.3X42ZC Arachis hypogaea HOM05D004561 ORTHO05D005315 9.3e-35 151.0 92 70.7
CAN.G1530.1 Capsicum annuum HOM05D004561 ORTHO05D005315 1.2e-34 150.6 105 61.0
A09p50910 Brassica napus HOM05D004561 ORTHO05D005315 2.7e-34 149.4 160 48.8
HPP92_027560 Vanilla planifolia HOM05D004561 ORTHO05D005315 1.3e-33 147.1 108 59.3
arahy.Tifrunner.gnm1.ann1.AX2CN5 Arachis hypogaea HOM05D004561 ORTHO05D005315 1.7e-33 146.7 191 44.0
Zm00001eb066050 Zea mays HOM05D004561 ORTHO05D005315 1.1e-32 144.1 103 62.1
CSS0036958 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 1.5e-32 143.7 86 73.3
CSS0005948 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 9.6e-32 141.0 86 72.1
CSS0005045 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 1.3e-31 140.6 86 72.1
AagrBONN_evm.TU.Sc2ySwM_368.3407 Anthoceros agrestis HOM05D004561 ORTHO05D005315 2.8e-31 139.4 193 40.4
CSS0006634 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 3.6e-31 139.0 86 69.8
vmacro21453 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 5.3e-30 135.2 87 66.7
PSO761G0502 Papaver somniferum HOM05D004561 ORTHO05D005315 1.4e-27 127.1 96 58.3
BcaC07g40185 Brassica carinata HOM05D004561 ORTHO05D005315 5.4e-27 125.2 185 39.5
Mapoly0029s0047 Marchantia polymorpha HOM05D004561 ORTHO05D005315 1.3e-25 120.6 150 41.3
Hund02231 Selenicereus undatus HOM05D004561 ORTHO05D005315 8.7e-25 117.9 135 43.0
SalBow1G5331 Salvia bowleyana HOM05D004561 ORTHO05D005315 6.9e-22 108.2 67 65.7
SalBow1G4039 Salvia bowleyana HOM05D004561 ORTHO05D005315 9.0e-22 107.8 67 61.2
SalBow1G2796 Salvia bowleyana HOM05D004561 ORTHO05D005315 2.0e-21 106.7 67 64.2
SalBow1G4548 Salvia bowleyana HOM05D004561 ORTHO05D005315 2.6e-21 106.3 93 52.7
CiPaw.16G098200 Carya illinoinensis HOM05D004561 ORTHO05D005315 4.5e-21 105.5 68 67.6
Cpa.g.c32558.1 Carica papaya HOM05D004561 ORTHO05D005315 1.3e-20 104.0 65 70.8
Nitab4.5_0000560g0110 Nicotiana tabacum HOM05D004561 ORTHO05D005315 4.2e-19 99.0 71 62.0
Haze_18936 Corylus avellana HOM05D004561 ORTHO05D005315 1.2e-18 97.4 89 56.2
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 2.7e-18 96.3 269 29.0
Sopen05g006540 Solanum pennellii HOM05D004561 ORTHO05D005315 3.5e-18 95.9 155 37.4
arahy.Tifrunner.gnm1.ann1.Y05SLV Arachis hypogaea HOM05D004561 ORTHO05D005315 2.8e-15 86.3 102 47.1
Hund26251 Selenicereus undatus HOM05D004561 ORTHO05D005315 3.1e-14 82.8 77 50.6
FvH4_5g18980 Fragaria vesca HOM05D004561 ORTHO05D005315 2.0e-13 80.1 37 100.0
SalBow1G0427 Salvia bowleyana HOM05D006885 ORTHO05D008606 2.0e-13 80.1 59 57.6
MCO09G807 Micromonas commoda HOM05D004561 ORTHO05D005315 3.4e-13 79.3 187 31.6
Sopen08g022960 Solanum pennellii HOM05D004561 ORTHO05D005315 4.5e-13 79.0 50 68.0
Nitab4.5_0013603g0010 Nicotiana tabacum HOM05D004561 ORTHO05D005315 1.7e-12 77.0 60 58.3
PRCOL_00001899 Prasinoderma coloniale HOM05D004561 ORTHO05D005315 8.4e-12 74.7 127 33.9
SEGI_12631 Sequoiadendron giganteum HOM05D004561 ORTHO05D005315 1.4e-11 73.9 95 41.1
Carub.0008s0419 Capsella rubella HOM05D004561 ORTHO05D005315 2.5e-11 73.2 48 62.5
Cre06.g300100 Chlamydomonas reinhardtii HOM05D004561 ORTHO05D005315 9.3e-11 71.2 132 33.3
MBI08_g32523_MAGBIO Magnolia biondii HOM05D004561 ORTHO05D005315 2.7e-10 69.7 80 43.8
Ca_17309_v3 Cicer arietinum L. HOM05D002967 ORTHO05D003281 2.3e-09 66.6 60 48.3
Solyc05g010730.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 6.7e-09 65.1 74 45.9
Cc05_g02560 Coffea canephora HOM05D004561 ORTHO05D005315 1.3e-07 60.8 77 42.9


User provided reference genes

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