Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G2675 Fragaria x ananassa HOM05D010636 ORTHO05D011274 1.3e-73 279.6 140 100.0
FvH4_2g13111 Fragaria vesca HOM05D000003 ORTHO05D011274 6.0e-31 137.9 110 56.4
FAN24G1917 Fragaria x ananassa HOM05D000011 ORTHO05D000157 6.0e-31 137.9 110 56.4
FvH4_6g22781 Fragaria vesca HOM05D000003 ORTHO05D000006 1.9e-21 106.3 110 49.1
FvH4_5g31851 Fragaria vesca HOM05D010636 ORTHO05D011274 4.3e-21 105.1 112 47.3
RcHm_v2.0_Chr5g0078071 Rosa chinensis HOM05D010636 ORTHO05D011274 2.4e-19 99.4 95 51.6
FvH4_7g03001 Fragaria vesca HOM05D010636 ORTHO05D011274 3.1e-19 99.0 106 45.3
FAN07G2710 Fragaria x ananassa HOM05D010636 ORTHO05D011274 4.0e-19 98.6 93 54.8
FAN14G4503 Fragaria x ananassa HOM05D010636 ORTHO05D011274 1.0e-17 94.0 111 48.6
RcHm_v2.0_Chr6g0289791 Rosa chinensis HOM05D000003 ORTHO05D011454 2.9e-17 92.4 105 43.8
FvH4_5g37180 Fragaria vesca HOM05D000003 ORTHO05D011454 9.3e-16 87.4 138 34.8
FvH4_5g38981 Fragaria vesca HOM05D000003 ORTHO05D011454 6.0e-15 84.7 138 34.1
FAN12G3088 Fragaria x ananassa HOM05D000003 ORTHO05D011454 7.9e-15 84.3 131 36.6
FAN18G3558 Fragaria x ananassa HOM05D000003 ORTHO05D011454 7.9e-15 84.3 138 34.8
RcHm_v2.0_Chr2g0118041 Rosa chinensis HOM05D010636 ORTHO05D011274 1.3e-14 83.6 83 51.8
Dinv21289 Davidia involucrata HOM05D000079 ORTHO05D000211 2.3e-14 82.8 107 40.2
RcHm_v2.0_Chr5g0066251 Rosa chinensis HOM05D000003 ORTHO05D011454 3.9e-14 82.0 95 44.2
FvH4_4g15790 Fragaria vesca HOM05D010636 ORTHO05D011274 5.7e-13 78.2 88 46.6
FAN18G0492 Fragaria x ananassa HOM05D010636 ORTHO05D011274 5.7e-13 78.2 93 41.9
FvH4_4g26583 Fragaria vesca HOM05D010636 ORTHO05D011274 1.4e-11 73.6 84 47.6
Dinv08495 Davidia involucrata HOM05D000003 ORTHO05D000167 1.8e-11 73.2 105 38.1
Duzib150G1547 Durio zibethinus HOM05D000003 ORTHO05D000167 1.8e-11 73.2 108 38.0
RcHm_v2.0_Chr4g0402201 Rosa chinensis HOM05D000003 ORTHO05D000004 1.8e-11 73.2 105 38.1
FvH4_5g25921 Fragaria vesca HOM05D000003 ORTHO05D000004 2.4e-11 72.8 76 48.7
FAN13G1405 Fragaria x ananassa HOM05D010636 ORTHO05D011274 2.4e-11 72.8 74 48.6
Duzib132G0669 Durio zibethinus HOM05D000003 ORTHO05D000167 5.3e-11 71.6 114 35.1
TAR331G0002 Trochodendron aralioides HOM05D000003 ORTHO05D000167 2.6e-10 69.3 121 28.1
FAN05G5590 Fragaria x ananassa HOM05D025546 ORTHO05D011274 4.5e-10 68.6 116 38.8
TAR256G0002 Trochodendron aralioides HOM05D000003 ORTHO05D000167 7.6e-10 67.8 123 28.5
CANSAT78G2307 Cannabis sativa HOM05D000003 ORTHO05D000167 1.0e-09 67.4 83 38.6
Haze_08252 Corylus avellana HOM05D009546 ORTHO05D014580 2.2e-09 66.2 101 32.7
RcHm_v2.0_Chr7g0182091 Rosa chinensis HOM05D000003 ORTHO05D000004 2.9e-09 65.9 116 35.3
Haze_27622 Corylus avellana HOM05D000003 ORTHO05D000167 5.0e-09 65.1 105 34.3
RcHm_v2.0_Chr1g0348191 Rosa chinensis HOM05D000003 ORTHO05D006737 6.5e-09 64.7 113 34.5
FvH4_3g28692 Fragaria vesca HOM05D010636 ORTHO05D011274 8.5e-09 64.3 53 58.5
FvH4_4g01552 Fragaria vesca HOM05D000003 ORTHO05D006737 8.5e-09 64.3 114 31.6
CANSAT11G1818 Cannabis sativa HOM05D000003 ORTHO05D000004 1.4e-08 63.5 106 29.2
CANSAT64G2436 Cannabis sativa HOM05D000003 ORTHO05D000167 1.9e-08 63.2 133 29.3
PSO063G0794 Papaver somniferum HOM05D000003 ORTHO05D001026 1.9e-08 63.2 90 35.6
Atru.chr8.838 Acer truncatum HOM05D000003 ORTHO05D000167 2.5e-08 62.8 103 33.0
CANSAT35G1565 Cannabis sativa HOM05D000003 ORTHO05D000167 2.5e-08 62.8 131 28.2
PSO063G1632 Papaver somniferum HOM05D000003 ORTHO05D001026 2.5e-08 62.8 101 32.7
CANSAT80G2836 Cannabis sativa HOM05D000003 ORTHO05D000167 3.2e-08 62.4 121 29.8
Duzib147G1603 Durio zibethinus HOM05D000003 ORTHO05D000167 3.2e-08 62.4 100 34.0
FvH4_1g25610 Fragaria vesca HOM05D000003 ORTHO05D000004 3.2e-08 62.4 118 36.4
FAN09G3474 Fragaria x ananassa HOM05D000003 ORTHO05D006737 3.2e-08 62.4 112 31.2
COL.COLO4_10225 Corchorus olitorius HOM05D000003 ORTHO05D000167 4.2e-08 62.0 106 34.9
Duzib147G1680 Durio zibethinus HOM05D000003 ORTHO05D000167 4.2e-08 62.0 93 33.3
FvH4_2g00211 Fragaria vesca HOM05D000003 ORTHO05D006737 4.2e-08 62.0 113 31.0
FAN21G2262 Fragaria x ananassa HOM05D034321 ORTHO05D011274 4.2e-08 62.0 110 35.5
Atru.chr12.998 Acer truncatum HOM05D000003 ORTHO05D000167 5.5e-08 61.6 105 30.5
CANSAT80G2317 Cannabis sativa HOM05D000003 ORTHO05D000167 5.5e-08 61.6 115 27.8
COL.COLO4_20671 Corchorus olitorius HOM05D000003 ORTHO05D000167 5.5e-08 61.6 98 32.7
Haze_05558 Corylus avellana HOM05D000027 ORTHO05D000066 7.2e-08 61.2 110 30.0
TAR199G0001 Trochodendron aralioides HOM05D000003 ORTHO05D000004 9.3e-08 60.8 111 36.0
CANSAT64G2879 Cannabis sativa HOM05D000003 ORTHO05D000004 1.2e-07 60.5 104 29.8
FvH4_4g07410 Fragaria vesca HOM05D005572 ORTHO05D011274 1.2e-07 60.5 51 54.9
FAN12G4097 Fragaria x ananassa HOM05D005572 ORTHO05D011274 1.2e-07 60.5 51 54.9
Sed0017730 Sechium edule HOM05D000003 ORTHO05D000004 1.2e-07 60.5 106 34.0
Atru.chr1.1664 Acer truncatum HOM05D000003 ORTHO05D000167 1.6e-07 60.1 103 31.1
CANSAT01G1765 Cannabis sativa HOM05D000003 ORTHO05D000167 1.6e-07 60.1 123 28.5
CANSAT80G2437 Cannabis sativa HOM05D000003 ORTHO05D000167 1.6e-07 60.1 105 32.4
QL11p009033 Quercus lobata HOM05D000003 ORTHO05D000004 1.6e-07 60.1 106 32.1
Atru.chr13.1037 Acer truncatum HOM05D000003 ORTHO05D000167 2.1e-07 59.7 103 32.0
Atru.chr8.1143 Acer truncatum HOM05D000003 ORTHO05D000004 2.1e-07 59.7 104 28.8
CSS0043774 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000167 2.1e-07 59.7 106 25.5
CANSAT21G2012 Cannabis sativa HOM05D000003 ORTHO05D000004 2.1e-07 59.7 110 31.8
AUR62033722 Chenopodium quinoa HOM05D000003 ORTHO05D000167 2.1e-07 59.7 110 33.6
Haze_05932 Corylus avellana HOM05D009031 ORTHO05D000167 2.1e-07 59.7 114 31.6
QL10p056321 Quercus lobata HOM05D000003 ORTHO05D000167 2.1e-07 59.7 105 32.4
CANSAT11G0632 Cannabis sativa HOM05D000003 ORTHO05D000004 2.7e-07 59.3 105 31.4
CANSAT11G2606 Cannabis sativa HOM05D000003 ORTHO05D000167 2.7e-07 59.3 115 29.6
CANSAT21G1802 Cannabis sativa HOM05D000003 ORTHO05D000167 2.7e-07 59.3 103 31.1
CANSAT21G2622 Cannabis sativa HOM05D000003 ORTHO05D000004 2.7e-07 59.3 100 34.0
CANSAT25G1542 Cannabis sativa HOM05D000003 ORTHO05D000167 2.7e-07 59.3 105 31.4
CANSAT25G1614 Cannabis sativa HOM05D000003 ORTHO05D000167 2.7e-07 59.3 109 29.4
CANSAT80G2658 Cannabis sativa HOM05D000003 ORTHO05D000167 2.7e-07 59.3 106 32.1
QL05p012339 Quercus lobata HOM05D000003 ORTHO05D000167 2.7e-07 59.3 109 30.3
RcHm_v2.0_Chr4g0432871 Rosa chinensis HOM05D000003 ORTHO05D015270 2.7e-07 59.3 106 32.1
Atru.chr8.782 Acer truncatum HOM05D000003 ORTHO05D000004 3.6e-07 58.9 104 30.8
CANSAT21G2268 Cannabis sativa HOM05D000003 ORTHO05D000167 3.6e-07 58.9 89 33.7
RcHm_v2.0_Chr1g0328181 Rosa chinensis HOM05D000003 ORTHO05D000004 3.6e-07 58.9 111 32.4
Atru.chr1.3769 Acer truncatum HOM05D000003 ORTHO05D000167 4.6e-07 58.5 103 30.1
Atru.chr6.2805 Acer truncatum HOM05D001254 ORTHO05D000167 4.6e-07 58.5 102 31.4
Haze_09308 Corylus avellana HOM05D001621 ORTHO05D000167 4.6e-07 58.5 107 32.7
FvH4_5g06193 Fragaria vesca HOM05D000003 ORTHO05D015112 4.6e-07 58.5 113 30.1
FAN11G1981 Fragaria x ananassa HOM05D000003 ORTHO05D011274 4.6e-07 58.5 36 63.9
Sed0010093 Sechium edule HOM05D000003 ORTHO05D000004 4.6e-07 58.5 107 33.6
Atru.chr3.1768 Acer truncatum HOM05D000003 ORTHO05D000167 6.1e-07 58.2 105 30.5
CANSAT25G1030 Cannabis sativa HOM05D000003 ORTHO05D000004 6.1e-07 58.2 119 30.3
CANSAT80G2600 Cannabis sativa HOM05D000003 ORTHO05D000167 6.1e-07 58.2 115 29.6
Duzib168G1464 Durio zibethinus HOM05D009774 ORTHO05D000167 6.1e-07 58.2 109 34.9
FvH4_4g13062 Fragaria vesca HOM05D000003 ORTHO05D011454 6.1e-07 58.2 95 35.8
FAN28G2422 Fragaria x ananassa HOM05D000003 ORTHO05D011454 6.1e-07 58.2 95 35.8
PSO675G7073 Papaver somniferum HOM05D000003 ORTHO05D001026 6.1e-07 58.2 79 35.4
RcHm_v2.0_Chr1g0314431 Rosa chinensis HOM05D000003 ORTHO05D006737 6.1e-07 58.2 106 34.0
EL10As6g23653 Beta vulgaris HOM05D000003 ORTHO05D000167 7.9e-07 57.8 101 31.7
CANSAT25G3451 Cannabis sativa HOM05D000003 ORTHO05D000004 7.9e-07 57.8 100 33.0
CANSAT35G0331 Cannabis sativa HOM05D000003 ORTHO05D000004 7.9e-07 57.8 105 27.6
COL.COLO4_09952 Corchorus olitorius HOM05D009774 ORTHO05D000167 7.9e-07 57.8 108 27.8
Atru.chr10.1148 Acer truncatum HOM05D000003 ORTHO05D000167 1.0e-06 57.4 103 29.1
Atru.chr8.1648 Acer truncatum HOM05D000003 ORTHO05D000167 1.0e-06 57.4 106 31.1
CANSAT01G1968 Cannabis sativa HOM05D000003 ORTHO05D000004 1.0e-06 57.4 110 30.0
CANSAT56G0969 Cannabis sativa HOM05D000003 ORTHO05D000167 1.0e-06 57.4 131 28.2
CANSAT78G0463 Cannabis sativa HOM05D000003 ORTHO05D000167 1.0e-06 57.4 109 27.5
Dinv32432 Davidia involucrata HOM05D000003 ORTHO05D011454 1.0e-06 57.4 81 35.8
Duzib187G0809 Durio zibethinus HOM05D000003 ORTHO05D000167 1.0e-06 57.4 109 33.0
FAN14G2513 Fragaria x ananassa HOM05D002502 ORTHO05D003592 1.0e-06 57.4 52 51.9
FAN19G2165 Fragaria x ananassa HOM05D007821 ORTHO05D009897 1.0e-06 57.4 108 30.6
Medtr3g116210 Medicago truncatula HOM05D000147 ORTHO05D004093 1.0e-06 57.4 108 29.6
SEGI_32247 Sequoiadendron giganteum HOM05D000898 ORTHO05D000762 1.0e-06 57.4 102 33.3
Atru.chr1.1940 Acer truncatum HOM05D000003 ORTHO05D000004 1.3e-06 57.0 107 32.7
Atru.chr2.2051 Acer truncatum HOM05D000003 ORTHO05D000167 1.3e-06 57.0 103 31.1
CANSAT64G1939 Cannabis sativa HOM05D000003 ORTHO05D000004 1.3e-06 57.0 105 26.7
CANSAT80G2262 Cannabis sativa HOM05D000003 ORTHO05D000167 1.3e-06 57.0 83 36.1
AUR62041573 Chenopodium quinoa HOM05D000003 ORTHO05D000004 1.3e-06 57.0 98 37.8
FAN11G0642 Fragaria x ananassa HOM05D000355 ORTHO05D000227 1.3e-06 57.0 117 27.4
Sed0027500 Sechium edule HOM05D000003 ORTHO05D000006 1.3e-06 57.0 136 27.2
Atru.chr1.3957 Acer truncatum HOM05D000003 ORTHO05D000167 1.8e-06 56.6 104 30.8
Atru.chr13.2074 Acer truncatum HOM05D000003 ORTHO05D000167 1.8e-06 56.6 109 28.4
CANSAT13G0006 Cannabis sativa HOM05D000003 ORTHO05D000167 1.8e-06 56.6 113 29.2
Duzib116G0857 Durio zibethinus HOM05D009774 ORTHO05D000167 1.8e-06 56.6 98 32.7
FAN11G2658 Fragaria x ananassa HOM05D034321 ORTHO05D011274 1.8e-06 56.6 106 34.0
QL02p082090 Quercus lobata HOM05D000003 ORTHO05D000167 1.8e-06 56.6 105 30.5
QL93p0138_0008 Quercus lobata HOM05D000003 ORTHO05D000167 1.8e-06 56.6 103 32.0
Atru.chr13.1676 Acer truncatum HOM05D000003 ORTHO05D000006 2.3e-06 56.2 103 31.1
Atru.chr8.695 Acer truncatum HOM05D000003 ORTHO05D000167 2.3e-06 56.2 103 30.1
CANSAT01G2496 Cannabis sativa HOM05D000003 ORTHO05D000167 2.3e-06 56.2 87 34.5
CANSAT21G2477 Cannabis sativa HOM05D000003 ORTHO05D000004 2.3e-06 56.2 100 33.0
CANSAT35G0664 Cannabis sativa HOM05D000003 ORTHO05D000167 2.3e-06 56.2 117 30.8
Cc11_g00430 Coffea canephora HOM05D000003 ORTHO05D000167 2.3e-06 56.2 104 29.8
FAN09G1021 Fragaria x ananassa HOM05D010636 ORTHO05D011274 2.3e-06 56.2 79 39.2
Atru.chr12.2225 Acer truncatum HOM05D000003 ORTHO05D000004 3.0e-06 55.8 86 34.9
CANSAT25G2443 Cannabis sativa HOM05D000003 ORTHO05D000004 3.0e-06 55.8 103 34.0
FvH4_5g04911 Fragaria vesca HOM05D000003 ORTHO05D006737 3.0e-06 55.8 120 30.8
FAN01G2727 Fragaria x ananassa HOM05D000003 ORTHO05D011454 3.0e-06 55.8 83 41.0
Prupe.3G063400 Prunus persica HOM05D000003 ORTHO05D000167 3.0e-06 55.8 108 31.5
QL02p081060 Quercus lobata HOM05D000003 ORTHO05D000167 3.0e-06 55.8 101 28.7
RcHm_v2.0_Chr2g0125461 Rosa chinensis HOM05D000003 ORTHO05D000022 3.0e-06 55.8 82 42.7
Atru.chr13.2366 Acer truncatum HOM05D004571 ORTHO05D005334 3.9e-06 55.5 103 30.1
Atru.chr8.816 Acer truncatum HOM05D000003 ORTHO05D000004 3.9e-06 55.5 83 36.1
Atru.chr9.679 Acer truncatum HOM05D000003 ORTHO05D000167 3.9e-06 55.5 104 29.8
CANSAT56G0621 Cannabis sativa HOM05D000003 ORTHO05D000167 3.9e-06 55.5 106 31.1
FAN27G2480 Fragaria x ananassa HOM05D000003 ORTHO05D011454 3.9e-06 55.5 68 38.2
RcHm_v2.0_Chr1g0345991 Rosa chinensis HOM05D000003 ORTHO05D011454 3.9e-06 55.5 80 36.2
RcHm_v2.0_Chr3g0486981 Rosa chinensis HOM05D000003 ORTHO05D006737 3.9e-06 55.5 120 29.2
RcHm_v2.0_Chr4g0389021 Rosa chinensis HOM05D000003 ORTHO05D000167 3.9e-06 55.5 106 30.2
Atru.chr1.2640 Acer truncatum HOM05D000003 ORTHO05D000126 5.1e-06 55.1 103 32.0
Atru.chr4.2041 Acer truncatum HOM05D000003 ORTHO05D000167 5.1e-06 55.1 113 31.0
Atru.chr5.2963 Acer truncatum HOM05D000003 ORTHO05D000006 5.1e-06 55.1 105 28.6
CANSAT01G3218 Cannabis sativa HOM05D000003 ORTHO05D000004 5.1e-06 55.1 105 26.7
Haze_16013 Corylus avellana HOM05D000003 ORTHO05D000167 5.1e-06 55.1 106 31.1
FAN16G3120 Fragaria x ananassa HOM05D010636 ORTHO05D011274 5.1e-06 55.1 113 32.7
Psat6g221120 Pisum sativum HOM05D000147 ORTHO05D004093 5.1e-06 55.1 107 29.0
RcHm_v2.0_Chr4g0417671 Rosa chinensis HOM05D000003 ORTHO05D000004 5.1e-06 55.1 90 38.9
arahy.Tifrunner.gnm1.ann1.3ZGA1D Arachis hypogaea HOM05D000155 ORTHO05D000022 6.7e-06 54.7 103 31.1
CANSAT35G2037 Cannabis sativa HOM05D000003 ORTHO05D000167 6.7e-06 54.7 86 36.0
CANSAT54G2861 Cannabis sativa HOM05D000003 ORTHO05D000004 6.7e-06 54.7 119 27.7
Prupe.7G038400 Prunus persica HOM05D000003 ORTHO05D010102 6.7e-06 54.7 101 30.7
Prupe.7G076800 Prunus persica HOM05D000003 ORTHO05D000167 6.7e-06 54.7 105 31.4
QL02p023292 Quercus lobata HOM05D000003 ORTHO05D000167 6.7e-06 54.7 108 29.6
RcHm_v2.0_Chr4g0400431 Rosa chinensis HOM05D000003 ORTHO05D011274 6.7e-06 54.7 65 44.6
RcHm_v2.0_Chr6g0260491 Rosa chinensis HOM05D000003 ORTHO05D006737 6.7e-06 54.7 114 32.5
Sed0025910 Sechium edule HOM05D000003 ORTHO05D000167 6.7e-06 54.7 115 29.6
TWI73G0607 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 6.7e-06 54.7 91 27.5
CANSAT01G0458 Cannabis sativa HOM05D000003 ORTHO05D000167 8.7e-06 54.3 92 30.4
CANSAT01G0780 Cannabis sativa HOM05D000003 ORTHO05D000004 8.7e-06 54.3 85 28.2
CANSAT01G1760 Cannabis sativa HOM05D000003 ORTHO05D000167 8.7e-06 54.3 108 25.9
CANSAT11G0809 Cannabis sativa HOM05D000003 ORTHO05D000167 8.7e-06 54.3 90 31.1
CANSAT21G0999 Cannabis sativa HOM05D000003 ORTHO05D000004 8.7e-06 54.3 102 33.3
CANSAT25G2167 Cannabis sativa HOM05D000003 ORTHO05D000167 8.7e-06 54.3 103 29.1
CANSAT37G0018 Cannabis sativa HOM05D000003 ORTHO05D000167 8.7e-06 54.3 97 33.0
CANSAT54G0125 Cannabis sativa HOM05D000003 ORTHO05D000167 8.7e-06 54.3 103 30.1
CANSAT56G2069 Cannabis sativa HOM05D000003 ORTHO05D000167 8.7e-06 54.3 107 30.8
CANSAT78G1753 Cannabis sativa HOM05D000003 ORTHO05D000167 8.7e-06 54.3 108 25.9
COL.COLO4_02217 Corchorus olitorius HOM05D036061 ORTHO05D000167 8.7e-06 54.3 98 33.7
Duzib264G0259 Durio zibethinus HOM05D000003 ORTHO05D000167 8.7e-06 54.3 110 25.5
FvH4_3g14231 Fragaria vesca HOM05D000003 ORTHO05D011454 8.7e-06 54.3 91 35.2
RcHm_v2.0_Chr2g0147661 Rosa chinensis HOM05D000003 ORTHO05D010713 8.7e-06 54.3 131 32.8
RcHm_v2.0_Chr5g0016681 Rosa chinensis HOM05D000003 ORTHO05D000004 8.7e-06 54.3 104 34.6
Sed0001376 Sechium edule HOM05D000003 ORTHO05D000167 8.7e-06 54.3 124 25.8


User provided reference genes

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