Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G2638 Fragaria x ananassa HOM05D002419 ORTHO05D005441 4.9e-102 374.4 181 100.0
FvH4_5g29720 Fragaria vesca HOM05D002419 ORTHO05D005441 3.9e-99 364.8 176 100.0
FAN13G2429 Fragaria x ananassa HOM05D002419 ORTHO05D005441 2.6e-95 352.1 172 98.3
FAN04G1346 Fragaria x ananassa HOM05D002419 ORTHO05D005441 1.7e-94 349.4 172 97.7
RcHm_v2.0_Chr7g0223211 Rosa chinensis HOM05D002419 ORTHO05D005441 6.0e-92 340.9 172 94.2
FAN08G2817 Fragaria x ananassa HOM05D002419 ORTHO05D005441 9.7e-90 333.6 164 98.2
MD10G1078500 Malus domestica HOM05D002419 ORTHO05D005441 1.7e-86 322.8 172 87.8
Prupe.1G205700 Prunus persica HOM05D002419 ORTHO05D005441 2.9e-86 322.0 172 86.0
Prupe.8G100300 Prunus persica HOM05D002419 ORTHO05D005441 6.5e-86 320.9 172 86.6
QL01p037218 Quercus lobata HOM05D002419 ORTHO05D005441 8.2e-81 303.9 170 83.5
Atru.chr3.3690 Acer truncatum HOM05D002419 ORTHO05D005441 1.4e-80 303.1 171 80.7
Ciclev10029381m.g Citrus clementina HOM05D002419 ORTHO05D005441 1.4e-80 303.1 168 82.1
Gohir.D08G057700 Gossypium hirsutum HOM05D002419 ORTHO05D005441 1.4e-80 303.1 170 81.2
Gorai.004G058900 Gossypium raimondii HOM05D002419 ORTHO05D005441 1.4e-80 303.1 170 81.2
Gohir.A08G047300 Gossypium hirsutum HOM05D002419 ORTHO05D005441 3.1e-80 302.0 170 80.6
arahy.Tifrunner.gnm1.ann1.LS5S44 Arachis hypogaea HOM05D002419 ORTHO05D005441 9.1e-80 300.4 170 80.0
LjContig00564g0008442 Lotus japonicus HOM05D002419 ORTHO05D005441 1.5e-79 299.7 172 80.8
GSVIVG01025135001 Vitis vinifera HOM05D002419 ORTHO05D005441 1.5e-79 299.7 169 79.9
arahy.Tifrunner.gnm1.ann1.0PI3PU Arachis hypogaea HOM05D002419 ORTHO05D005441 3.4e-79 298.5 170 79.4
CiPaw.13G107100 Carya illinoinensis HOM05D002419 ORTHO05D005441 3.4e-79 298.5 171 79.5
TAR623G1637 Trochodendron aralioides HOM05D002419 ORTHO05D005441 3.4e-79 298.5 171 77.8
Aqoxy5G03165 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 4.5e-79 298.1 171 78.9
Eucgr.J00952 Eucalyptus grandis HOM05D002419 ORTHO05D005441 4.5e-79 298.1 170 78.2
Nitab4.5_0002129g0060 Nicotiana tabacum HOM05D002419 ORTHO05D005441 5.9e-79 297.7 168 81.0
Thecc.01G220900 Theobroma cacao HOM05D002419 ORTHO05D005441 5.9e-79 297.7 170 78.8
Duzib138G1011 Durio zibethinus HOM05D002419 ORTHO05D005441 7.7e-79 297.4 166 82.5
Manes.04G024900 Manihot esculenta HOM05D002419 ORTHO05D005441 7.7e-79 297.4 170 80.0
COL.COLO4_15624 Corchorus olitorius HOM05D002419 ORTHO05D005441 1.0e-78 297.0 166 81.3
PGR119G1746 Punica granatum HOM05D002419 ORTHO05D005441 1.3e-78 296.6 170 77.6
Cfa010014 Carpinus fangiana HOM05D002419 ORTHO05D005441 1.7e-78 296.2 170 80.0
Lalb_Chr10g0105941 Lupinus albus HOM05D002419 ORTHO05D005441 2.2e-78 295.8 168 79.8
Phvul.004G086200 Phaseolus vulgaris HOM05D002419 ORTHO05D005441 2.9e-78 295.4 166 82.5
arahy.Tifrunner.gnm1.ann1.P2RDRN Arachis hypogaea HOM05D002419 ORTHO05D005441 3.8e-78 295.0 166 80.7
PSO339G1519 Papaver somniferum HOM05D002419 ORTHO05D005441 3.8e-78 295.0 171 77.2
CSS0025233 Camellia sinensis var. sinensis HOM05D002419 ORTHO05D005441 5.0e-78 294.7 168 78.6
Cpa.g.sc8.318 Carica papaya HOM05D002419 ORTHO05D005441 5.0e-78 294.7 169 79.9
Solyc11g072410.2 Solanum lycopersicum HOM05D002419 ORTHO05D005441 5.0e-78 294.7 169 79.3
Hma1.2p1_0958F.1_g241480 Hydrangea macrophylla HOM05D002419 ORTHO05D005441 6.5e-78 294.3 169 78.1
PSO541G3116 Papaver somniferum HOM05D002419 ORTHO05D005441 6.5e-78 294.3 172 76.7
PSO675G4527 Papaver somniferum HOM05D002419 ORTHO05D005441 6.5e-78 294.3 172 76.7
Aqoxy5G00056 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 8.5e-78 293.9 171 78.4
Dinv32788 Davidia involucrata HOM05D002419 ORTHO05D005441 1.4e-77 293.1 170 77.1
Glyma.02G076000 Glycine max HOM05D002419 ORTHO05D005441 1.4e-77 293.1 172 77.9
Sopen11g030060 Solanum pennellii HOM05D002419 ORTHO05D005441 1.4e-77 293.1 169 78.7
TWI31G0524 Tripterygium wilfordii HOM05D002419 ORTHO05D005441 1.4e-77 293.1 168 80.4
Duzib211G0640 Durio zibethinus HOM05D002419 ORTHO05D005441 1.9e-77 292.7 170 77.6
Peaxi162Scf00389g00950 Petunia axillaris HOM05D002419 ORTHO05D005441 1.9e-77 292.7 171 77.2
SalBow3G4510 Salvia bowleyana HOM05D002419 ORTHO05D005441 1.9e-77 292.7 166 80.1
PGSC0003DMG400027404 Solanum tuberosum HOM05D002419 ORTHO05D005441 1.9e-77 292.7 169 78.1
TPR.G1260 Trifolium pratense HOM05D002419 ORTHO05D005441 1.9e-77 292.7 166 81.9
Rhsim08G0250900 Rhododendron simsii HOM05D002419 ORTHO05D005441 4.2e-77 291.6 171 75.4
DCAR_006045 Daucus carota HOM05D002419 ORTHO05D005441 7.2e-77 290.8 169 75.7
Medtr5g087910 Medicago truncatula HOM05D002419 ORTHO05D005441 7.2e-77 290.8 166 80.7
VMungo0245G0001 Vigna mungo HOM05D002419 ORTHO05D005441 7.2e-77 290.8 172 77.9
CANSAT54G0974 Cannabis sativa HOM05D002419 ORTHO05D005441 9.4e-77 290.4 166 79.5
Duzib211G0283 Durio zibethinus HOM05D002419 ORTHO05D005441 9.4e-77 290.4 170 77.6
Glyma.16G158000 Glycine max HOM05D002419 ORTHO05D005441 2.7e-76 288.9 172 76.2
Hund28200 Selenicereus undatus HOM05D002419 ORTHO05D005441 3.6e-76 288.5 178 75.8
Hund28212 Selenicereus undatus HOM05D002419 ORTHO05D005441 3.6e-76 288.5 178 75.8
AUR62019559 Chenopodium quinoa HOM05D002419 ORTHO05D005441 4.7e-76 288.1 168 76.8
Migut.D02183 Erythranthe guttata HOM05D002419 ORTHO05D005441 4.7e-76 288.1 166 78.3
Potri.006G228500 Populus trichocarpa HOM05D002419 ORTHO05D005441 7.9e-76 287.3 167 77.8
Potri.012G109400 Populus trichocarpa HOM05D002419 ORTHO05D005441 7.9e-76 287.3 167 77.8
Ca_01433_v3 Cicer arietinum L. HOM05D002419 ORTHO05D005441 1.0e-75 287.0 172 77.3
Lj1g0007529 Lotus japonicus HOM05D002419 ORTHO05D005441 1.0e-75 287.0 166 79.5
ClCG02G020950 Citrullus lanatus HOM05D002419 ORTHO05D005441 1.4e-75 286.6 168 76.2
Sed0002828 Sechium edule HOM05D005177 ORTHO05D005441 1.4e-75 286.6 170 76.5
Zm00001eb305840 Zea mays HOM05D002419 ORTHO05D005441 1.8e-75 286.2 169 76.3
Ca_11594_v3 Cicer arietinum L. HOM05D002419 ORTHO05D005441 2.3e-75 285.8 172 76.7
SGA_v2.0_scaffold61G21167 Striga asiatica HOM05D002419 ORTHO05D005441 2.3e-75 285.8 166 76.5
Sc06g0010580 Simmondsia chinensis HOM05D002419 ORTHO05D005441 3.0e-75 285.4 168 76.8
Ah.13g070120 Amaranthus hybridus HOM05D002419 ORTHO05D005441 3.9e-75 285.0 180 72.8
CsaV3_6G021640 Cucumis sativus L. HOM05D002419 ORTHO05D005441 3.9e-75 285.0 168 75.6
MSTRG.21143 Avicennia marina HOM05D002419 ORTHO05D005441 5.1e-75 284.6 166 74.7
MELO3C025747.2 Cucumis melo HOM05D002419 ORTHO05D005441 6.7e-75 284.3 168 75.0
Os07g0412400 Oryza sativa ssp. japonica HOM05D002419 ORTHO05D005441 6.7e-75 284.3 169 74.0
Actinidia03746 Actinidia chinensis HOM05D005177 ORTHO05D006175 1.1e-74 283.5 162 77.8
Cc04_g16270 Coffea canephora HOM05D002419 ORTHO05D005441 1.5e-74 283.1 169 74.6
TPR.G11323 Trifolium pratense HOM05D002419 ORTHO05D005441 1.5e-74 283.1 166 78.3
VMungo1080G0265 Vigna mungo HOM05D002419 ORTHO05D005441 2.6e-74 282.3 166 77.7
EL10Ac5g12738 Beta vulgaris HOM05D002419 ORTHO05D005441 3.3e-74 282.0 182 72.5
CDE02G0876 Ceratophyllum demersum HOM05D002419 ORTHO05D005441 3.3e-74 282.0 166 74.1
THA.LOC104814839 Tarenaya hassleriana HOM05D002419 ORTHO05D005441 5.7e-74 281.2 169 76.3
Haze_23372 Corylus avellana HOM05D002419 ORTHO05D005441 1.7e-73 279.6 181 73.5
Lsat_1_v5_gn_6_26220 Lactuca sativa HOM05D002419 ORTHO05D005441 1.7e-73 279.6 166 73.5
Psat2g022600 Pisum sativum HOM05D002419 ORTHO05D005441 2.8e-73 278.9 166 78.9
Sp6g21950 Schrenkiella parvula HOM05D002419 ORTHO05D005441 2.8e-73 278.9 168 73.8
MBI18_g31602_MAGBIO Magnolia biondii HOM05D002419 ORTHO05D005441 3.7e-73 278.5 168 73.2
HanXRQChr13g0401511 Helianthus annuus HOM05D002419 ORTHO05D005441 1.1e-72 276.9 170 72.9
THA.LOC104799485 Tarenaya hassleriana HOM05D002419 ORTHO05D005441 4.1e-72 275.0 167 76.6
BcaC02g12517 Brassica carinata HOM05D002419 ORTHO05D005441 5.3e-72 274.6 168 72.0
BcaB08g36334 Brassica carinata HOM05D002419 ORTHO05D005441 9.1e-72 273.9 168 73.8
Rhsim01G0220200 Rhododendron simsii HOM05D002419 ORTHO05D005441 9.1e-72 273.9 204 63.2
ATR0564G250 Amborella trichopoda HOM05D002419 ORTHO05D005441 1.2e-71 273.5 172 69.2
CDE06G2731 Ceratophyllum demersum HOM05D002419 ORTHO05D005441 1.5e-71 273.1 166 71.1
Carub.0003s2777 Capsella rubella HOM05D002419 ORTHO05D005441 2.0e-71 272.7 168 72.0
C03p12900 Brassica napus HOM05D002419 ORTHO05D005441 7.7e-71 270.8 168 72.0
BolC4t26562H Brassica oleracea HOM05D002419 ORTHO05D005441 1.0e-70 270.4 168 71.4
A03p11170 Brassica napus HOM05D002419 ORTHO05D005441 1.3e-70 270.0 168 70.8
BraA03t10433Z Brassica rapa HOM05D002419 ORTHO05D005441 1.3e-70 270.0 168 70.8
Oeu037230.1 Olea europaea HOM05D002419 ORTHO05D005441 1.3e-70 270.0 162 75.3
BolC3t13754H Brassica oleracea HOM05D002419 ORTHO05D005441 2.2e-70 269.2 166 72.9
Thhalv10014819m.g Eutrema salsugineum HOM05D002419 ORTHO05D005441 2.2e-70 269.2 168 72.0
BcaB01g04654 Brassica carinata HOM05D002419 ORTHO05D005441 3.8e-70 268.5 168 71.4
AUR62037871 Chenopodium quinoa HOM05D002419 ORTHO05D005441 5.0e-70 268.1 154 79.2
ECA233G1138 Erigeron canadensis HOM05D002419 ORTHO05D005441 5.0e-70 268.1 170 69.4
BcaC04g19694 Brassica carinata HOM05D002419 ORTHO05D005441 3.2e-69 265.4 166 72.3
AL8G36960 Arabidopsis lyrata HOM05D002419 ORTHO05D005441 4.2e-69 265.0 168 69.6
CAN.G1839.8 Capsicum annuum HOM05D002419 ORTHO05D005441 5.5e-69 264.6 168 69.6
CARHR274010 Cardamine hirsuta HOM05D002419 ORTHO05D005441 1.6e-68 263.1 168 71.4
SEGI_39229 Sequoiadendron giganteum HOM05D002419 ORTHO05D005441 1.6e-68 263.1 173 67.6
Oeu005909.2 Olea europaea HOM05D002419 ORTHO05D005441 8.0e-68 260.8 156 76.3
vmacro14463 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 1.4e-67 260.0 232 55.6
HPP92_005091 Vanilla planifolia HOM05D002419 ORTHO05D005441 1.8e-67 259.6 168 67.9
BcaC08g46529 Brassica carinata HOM05D002419 ORTHO05D005441 2.3e-67 259.2 168 69.6
Pp3c13_9300 Physcomitrium patens HOM05D002419 ORTHO05D005441 8.8e-67 257.3 168 67.9
Nitab4.5_0000106g0060 Nicotiana tabacum HOM05D002419 ORTHO05D005441 1.1e-66 256.9 168 68.5
A10p17550 Brassica napus HOM05D002419 ORTHO05D005441 3.3e-66 255.4 158 74.1
Peaxi162Scf00101g01011 Petunia axillaris HOM05D002419 ORTHO05D005441 3.3e-66 255.4 169 67.5
AT5G60340 Arabidopsis thaliana HOM05D002419 ORTHO05D005441 5.7e-66 254.6 168 67.9
C09p52960 Brassica napus HOM05D002419 ORTHO05D005441 5.7e-66 254.6 158 74.1
BolC9t58170H Brassica oleracea HOM05D002419 ORTHO05D005441 5.7e-66 254.6 158 74.1
BraA10t43836Z Brassica rapa HOM05D002419 ORTHO05D005441 5.7e-66 254.6 158 74.1
AagrBONN_evm.TU.Sc2ySwM_344.3388 Anthoceros agrestis HOM05D002419 ORTHO05D005441 1.7e-65 253.1 164 67.7
Aa31LG1G12400 Aethionema arabicum HOM05D002419 ORTHO05D005441 9.1e-64 247.3 150 75.3
TAR369G1020 Trochodendron aralioides HOM05D002419 ORTHO05D005441 1.3e-62 243.4 176 65.9
Mapoly0012s0053 Marchantia polymorpha HOM05D002419 ORTHO05D005441 9.4e-61 237.3 166 66.3
PGSC0003DMG400007496 Solanum tuberosum HOM05D002419 ORTHO05D005441 2.7e-60 235.7 174 62.6
SMO367G1131 Selaginella moellendorffii HOM05D002419 ORTHO05D005441 6.1e-60 234.6 168 62.5
Sopen06g031710 Solanum pennellii HOM05D002419 ORTHO05D005441 5.2e-59 231.5 169 60.9
CBR_g24285 Chara braunii HOM05D002419 ORTHO05D005441 1.5e-58 229.9 160 64.4
Haze_23913 Corylus avellana HOM05D002419 ORTHO05D005441 2.0e-58 229.6 168 66.1
Cre02.g081550 Chlamydomonas reinhardtii HOM05D002419 ORTHO05D005441 3.7e-57 225.3 164 59.1
SHI24546 Sapria himalayana HOM05D002419 ORTHO05D005441 4.8e-57 224.9 166 62.7
PRCOL_00000283 Prasinoderma coloniale HOM05D002419 ORTHO05D005441 1.8e-51 206.5 167 55.1
Nn1g08940 Nelumbo nucifera HOM05D002419 ORTHO05D005441 1.1e-48 197.2 108 80.6
Glyma.10G187200 Glycine max HOM05D002419 ORTHO05D005441 2.7e-47 192.6 129 72.1
Nitab4.5_0001802g0070 Nicotiana tabacum HOM05D006502 ORTHO05D007704 2.9e-46 189.1 157 59.2
MCO01G137 Micromonas commoda HOM05D002419 ORTHO05D005441 2.5e-45 186.0 173 50.9
Aqoxy6G01924 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 7.2e-45 184.5 110 76.4
unitig_736.g22419 Utricularia gibba HOM05D002419 ORTHO05D005441 3.4e-42 175.6 166 54.2
Nn5g28456 Nelumbo nucifera HOM05D002419 ORTHO05D005441 1.3e-41 173.7 110 70.0
CAN.G553.11 Capsicum annuum HOM05D002419 ORTHO05D005441 2.2e-41 172.9 101 76.2
CAN.G6400.1 Capsicum annuum HOM05D002419 ORTHO05D005441 1.6e-39 166.8 101 75.2
Dinv24670 Davidia involucrata HOM05D002419 ORTHO05D005441 2.7e-39 166.0 103 70.9
QL08p054546 Quercus lobata HOM05D002419 ORTHO05D005441 1.3e-38 163.7 170 54.1
Solyc06g075310.4 Solanum lycopersicum HOM05D002419 ORTHO05D005441 1.3e-38 163.7 108 67.6
AagrBONN_evm.TU.Sc2ySwM_228.4581 Anthoceros agrestis HOM05D002419 ORTHO05D005441 8.6e-38 161.0 104 69.2
CAN.G1001.14 Capsicum annuum HOM05D002419 ORTHO05D005441 4.3e-37 158.7 108 65.7
CAN.G1001.18 Capsicum annuum HOM05D002419 ORTHO05D005441 4.3e-37 158.7 108 65.7
Aa31LG4G12680 Aethionema arabicum HOM05D002419 ORTHO05D005441 2.6e-34 149.4 85 78.8
CAN.G352.38 Capsicum annuum HOM05D002419 ORTHO05D005441 6.4e-33 144.8 176 47.7
Haze_26704 Corylus avellana HOM05D002419 ORTHO05D164840 4.3e-29 132.1 165 38.8
arahy.Tifrunner.gnm1.ann1.VN8392 Arachis hypogaea HOM05D002419 ORTHO05D005441 4.0e-27 125.6 72 75.0
arahy.Tifrunner.gnm1.ann1.9EY0GB Arachis hypogaea HOM05D002419 ORTHO05D005441 7.5e-26 121.3 137 51.1
Peaxi162Scf00101g00114 Petunia axillaris HOM05D002419 ORTHO05D005441 3.5e-23 112.5 121 50.4
Cfa024491 Carpinus fangiana HOM05D002419 ORTHO05D126234 1.1e-19 100.9 188 30.3
vmacro14073 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 8.9e-19 97.8 63 65.1
HPP92_005089 Vanilla planifolia HOM05D002419 ORTHO05D005441 7.5e-18 94.7 61 70.5
SHI24547 Sapria himalayana HOM05D002419 ORTHO05D005441 2.7e-15 86.3 79 53.2
PGSC0003DMG400008253 Solanum tuberosum HOM05D002419 ORTHO05D030681 5.1e-14 82.0 60 58.3
PGSC0003DMG400035128 Solanum tuberosum HOM05D002419 ORTHO05D030681 2.1e-12 76.6 60 56.7
PGSC0003DMG400039134 Solanum tuberosum HOM05D002419 ORTHO05D030681 3.6e-12 75.9 61 59.0
Actinidia21172 Actinidia chinensis HOM05D002419 ORTHO05D055483 1.4e-11 73.9 35 88.6
vmacro14074 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 6.0e-07 58.5 48 58.3


User provided reference genes

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