Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G2579 Fragaria x ananassa HOM05D005777 ORTHO05D006854 1.0e-168 596.7 302 100.0
FvH4_5g11630 Fragaria vesca HOM05D005777 ORTHO05D006854 9.6e-135 483.8 296 86.1
FAN18G2480 Fragaria x ananassa HOM05D005777 ORTHO05D006854 2.8e-134 482.3 296 85.8
FAN08G0729 Fragaria x ananassa HOM05D005777 ORTHO05D006854 6.1e-129 464.5 297 82.8
FAN13G2465 Fragaria x ananassa HOM05D005777 ORTHO05D006854 1.7e-118 429.9 223 96.9
FAN04G0792 Fragaria x ananassa HOM05D005777 ORTHO05D006854 1.2e-113 413.7 226 93.4
RcHm_v2.0_Chr7g0186161 Rosa chinensis HOM05D005777 ORTHO05D006854 1.4e-112 410.2 296 72.6
Prupe.5G124500 Prunus persica HOM05D005777 ORTHO05D006854 2.2e-86 323.2 294 59.5
QL02p029612 Quercus lobata HOM05D005777 ORTHO05D006854 1.9e-66 256.9 326 46.6
Cfa011969 Carpinus fangiana HOM05D005777 ORTHO05D006854 5.4e-61 238.8 301 47.5
Haze_09107 Corylus avellana HOM05D005777 ORTHO05D006854 5.1e-59 232.3 323 44.0
TAR629G1222 Trochodendron aralioides HOM05D005777 ORTHO05D006854 1.1e-53 214.5 342 40.1
Lj8C204T6 Lonicera japonica HOM05D005777 ORTHO05D006854 2.5e-50 203.4 321 39.9
CSS0003604 Camellia sinensis var. sinensis HOM05D005777 ORTHO05D006854 6.8e-48 195.3 367 36.5
Nitab4.5_0002367g0090 Nicotiana tabacum HOM05D005777 ORTHO05D006854 4.4e-47 192.6 302 39.7
Nitab4.5_0002793g0030 Nicotiana tabacum HOM05D005777 ORTHO05D006854 4.4e-47 192.6 321 39.3
Sabra07G0049700 Salix brachista HOM05D005777 ORTHO05D006854 5.8e-47 192.2 349 37.5
vmacro13879 Vaccinium macrocarpon HOM05D005777 ORTHO05D006854 3.2e-45 186.4 373 35.7
Aqoxy5G04312 Aquilegia oxysepala HOM05D005777 ORTHO05D006854 4.2e-45 186.0 331 37.5
MD06G1111700 Malus domestica HOM05D005777 ORTHO05D006854 7.1e-45 185.3 180 52.2
Atru.chr9.1942 Acer truncatum HOM05D005777 ORTHO05D006854 2.3e-43 180.3 370 31.4
Nn1g00296 Nelumbo nucifera HOM05D005777 ORTHO05D006854 3.0e-43 179.9 338 36.4
DCAR_006511 Daucus carota HOM05D005777 ORTHO05D006854 3.9e-43 179.5 298 38.6
Rhsim07G0080700 Rhododendron simsii HOM05D005777 ORTHO05D006854 5.1e-43 179.1 341 36.4
MELO3C033830.2 Cucumis melo HOM05D005777 ORTHO05D006854 6.6e-43 178.7 338 35.2
Lsat_1_v5_gn_6_83361 Lactuca sativa HOM05D005777 ORTHO05D006854 8.7e-43 178.3 339 35.1
Potri.007G058050 Populus trichocarpa HOM05D005777 ORTHO05D006854 8.7e-43 178.3 350 35.1
TWI60G0567 Tripterygium wilfordii HOM05D005777 ORTHO05D006854 4.3e-42 176.0 306 37.6
CsaV3_5G001940 Cucumis sativus L. HOM05D005777 ORTHO05D006854 7.3e-42 175.3 338 34.6
Phvul.002G300700 Phaseolus vulgaris HOM05D005777 ORTHO05D006854 7.3e-42 175.3 279 37.3
Actinidia22740 Actinidia chinensis HOM05D005777 ORTHO05D006854 1.1e-40 171.4 316 36.1
Sed0007946 Sechium edule HOM05D005777 ORTHO05D006854 2.4e-40 170.2 275 40.4
Glyma.08G025000 Glycine max HOM05D005777 ORTHO05D006854 9.0e-40 168.3 280 38.2
PGR042G2859 Punica granatum HOM05D005777 ORTHO05D006854 9.0e-40 168.3 249 41.0
MBI07_g24771_MAGBIO Magnolia biondii HOM05D005777 ORTHO05D006854 1.5e-39 167.5 370 33.0
Peaxi162Scf00074g00526 Petunia axillaris HOM05D005777 ORTHO05D006854 2.0e-39 167.2 340 33.5
Glyma.05G218900 Glycine max HOM05D005777 ORTHO05D006854 2.6e-39 166.8 277 37.2
HanXRQChr03g0083721 Helianthus annuus HOM05D005777 ORTHO05D006854 2.6e-39 166.8 332 32.8
COL.COLO4_25066 Corchorus olitorius HOM05D000316 ORTHO05D006854 2.9e-38 163.3 182 51.1
ECA240G0322 Erigeron canadensis HOM05D005777 ORTHO05D006854 2.9e-38 163.3 344 33.7
Thecc.08G166000 Theobroma cacao HOM05D005777 ORTHO05D006854 1.9e-37 160.6 162 53.1
Sopen08g030950 Solanum pennellii HOM05D005777 ORTHO05D006854 4.2e-37 159.5 342 33.9
PGSC0003DMG400012134 Solanum tuberosum HOM05D005777 ORTHO05D006854 4.2e-37 159.5 342 33.6
Psat7g024000 Pisum sativum HOM05D005777 ORTHO05D006854 5.4e-37 159.1 277 35.4
CAN.G567.32 Capsicum annuum HOM05D005777 ORTHO05D006854 9.3e-37 158.3 340 33.8
Solyc08g082720.4 Solanum lycopersicum HOM05D005777 ORTHO05D006854 9.3e-37 158.3 342 33.9
CANSAT21G0853 Cannabis sativa HOM05D005777 ORTHO05D006854 1.6e-36 157.5 277 35.0
Medtr8g099725 Medicago truncatula HOM05D005777 ORTHO05D006854 1.6e-36 157.5 274 36.1
TPR.G3378 Trifolium pratense HOM05D005777 ORTHO05D006854 1.6e-36 157.5 191 48.2
Lj4g0026879 Lotus japonicus HOM05D005777 ORTHO05D006854 3.5e-36 156.4 162 53.7
Ca_17460_v3 Cicer arietinum L. HOM05D005777 ORTHO05D006854 1.0e-35 154.8 189 46.6
Ciclev10023944m.g Citrus clementina HOM05D005777 ORTHO05D006854 6.6e-35 152.1 197 43.7
VMungo0251G0419 Vigna mungo HOM05D003100 ORTHO05D003533 1.3e-33 147.9 195 46.7
PSO170G4328 Papaver somniferum HOM05D005777 ORTHO05D006854 1.6e-33 147.5 368 30.4
Eucgr.E00747 Eucalyptus grandis HOM05D005777 ORTHO05D006854 4.8e-33 146.0 303 32.3
Manes.01G049500 Manihot esculenta HOM05D005777 ORTHO05D006854 1.4e-32 144.4 302 33.8
CiPaw.11G117200 Carya illinoinensis HOM05D005777 ORTHO05D006854 3.1e-32 143.3 230 38.7
Lalb_Chr05g0223951 Lupinus albus HOM05D005777 ORTHO05D006854 4.0e-32 142.9 299 34.1
Cc08_g16390 Coffea canephora HOM05D005777 ORTHO05D006854 1.2e-31 141.4 258 38.4
Eucgr.E00744 Eucalyptus grandis HOM05D005777 ORTHO05D006854 7.6e-31 138.7 303 31.4
Eucgr.E00956 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.3e-30 137.9 303 31.4
Duzib116G0305 Durio zibethinus HOM05D005777 ORTHO05D006854 8.4e-30 135.2 204 39.7
Sc01g0010430 Simmondsia chinensis HOM05D005777 ORTHO05D006854 8.4e-30 135.2 223 38.1
Oeu055021.1 Olea europaea HOM05D005777 ORTHO05D006854 7.1e-29 132.1 199 39.7
Cpa.g.sc79.3 Carica papaya HOM05D005777 ORTHO05D006854 1.2e-28 131.3 205 37.6
Migut.E01651 Erythranthe guttata HOM05D005777 ORTHO05D006854 1.2e-28 131.3 202 40.6
AUR62019875 Chenopodium quinoa HOM05D005777 ORTHO05D006854 4.6e-28 129.4 222 37.8
Migut.E00735 Erythranthe guttata HOM05D005777 ORTHO05D006854 6.0e-28 129.0 209 38.8
Eucgr.E00752 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.0e-27 128.3 150 43.3
EL10Ac5g12951 Beta vulgaris HOM05D005777 ORTHO05D006854 1.3e-27 127.9 236 35.6
Lsat_1_v5_gn_5_82800 Lactuca sativa HOM05D005777 ORTHO05D006854 1.3e-27 127.9 202 39.1
Ah.12g052840 Amaranthus hybridus HOM05D005777 ORTHO05D006854 8.7e-27 125.2 256 34.0
GSVIVG01019597001 Vitis vinifera HOM05D005777 ORTHO05D006854 1.9e-26 124.0 115 56.5
Hund14203 Selenicereus undatus HOM05D005777 ORTHO05D006854 3.3e-26 123.2 220 35.5
Dinv37498 Davidia involucrata HOM05D005777 ORTHO05D006854 8.1e-25 118.6 106 57.5
Eucgr.E00762 Eucalyptus grandis HOM05D005777 ORTHO05D006854 4.5e-23 112.8 242 31.4
HPP92_024143 Vanilla planifolia HOM05D005777 ORTHO05D006854 1.1e-21 108.2 189 36.0
Eucgr.E00894 Eucalyptus grandis HOM05D005777 ORTHO05D006854 2.1e-20 104.0 79 62.0
Lsat_1_v5_gn_9_112141 Lactuca sativa HOM05D005777 ORTHO05D006854 3.5e-20 103.2 77 62.3
Eucgr.E00895 Eucalyptus grandis HOM05D005777 ORTHO05D006854 5.7e-18 95.9 125 43.2
Gorai.005G117300 Gossypium raimondii HOM05D005777 ORTHO05D006854 1.3e-17 94.7 177 33.9
Eucgr.E00686 Eucalyptus grandis HOM05D005777 ORTHO05D006854 2.1e-17 94.0 85 54.1
Gohir.A02G088000 Gossypium hirsutum HOM05D005777 ORTHO05D006854 4.8e-17 92.8 181 35.4
ATR0602G092 Amborella trichopoda HOM05D005777 ORTHO05D006854 6.3e-17 92.4 211 31.3
SGA_v2.0_scaffold74G24601 Striga asiatica HOM05D005777 ORTHO05D006854 6.3e-17 92.4 268 29.5
SHI06955 Sapria himalayana HOM05D005777 ORTHO05D006854 9.0e-16 88.6 86 54.7
Eucgr.E00939 Eucalyptus grandis HOM05D005777 ORTHO05D006854 5.9e-15 85.9 166 34.3
Os09g0363400 Oryza sativa ssp. japonica HOM05D005777 ORTHO05D006854 1.3e-14 84.7 208 27.9
CDE03G0022 Ceratophyllum demersum HOM05D002476 ORTHO05D002652 3.2e-13 80.1 153 35.3
QL08p034398 Quercus lobata HOM05D000176 ORTHO05D000106 3.2e-13 80.1 76 55.3
QL06p042986 Quercus lobata HOM05D000529 ORTHO05D000472 4.2e-13 79.7 76 55.3
THA.LOC104813047 Tarenaya hassleriana HOM05D005777 ORTHO05D006854 4.2e-13 79.7 93 46.2
CARHR255730 Cardamine hirsuta HOM05D005777 ORTHO05D006854 9.3e-13 78.6 90 46.7
AUR62007011 Chenopodium quinoa HOM05D005777 ORTHO05D006854 1.6e-12 77.8 241 30.7
Gohir.D02G103200 Gossypium hirsutum HOM05D005777 ORTHO05D006854 3.5e-12 76.6 83 48.2
Eucgr.E00726 Eucalyptus grandis HOM05D005777 ORTHO05D006854 6.1e-12 75.9 100 40.0
Eucgr.E00912 Eucalyptus grandis HOM05D005777 ORTHO05D006854 6.1e-12 75.9 100 40.0
Thhalv10028849m.g Eutrema salsugineum HOM05D005777 ORTHO05D006854 7.9e-12 75.5 114 39.5
Carub.0006s2962 Capsella rubella HOM05D005777 ORTHO05D006854 1.8e-11 74.3 90 42.2
Eucgr.E00900 Eucalyptus grandis HOM05D005777 ORTHO05D006854 3.0e-11 73.6 109 39.4
AL6G44960 Arabidopsis lyrata HOM05D005777 ORTHO05D006854 8.7e-11 72.0 90 42.2
BraA09t38398Z Brassica rapa HOM05D005777 ORTHO05D006854 2.5e-10 70.5 74 45.9
Sp6g06640 Schrenkiella parvula HOM05D005777 ORTHO05D006854 3.3e-10 70.1 98 41.8
FAN04G0565 Fragaria x ananassa HOM05D005777 ORTHO05D006854 4.3e-10 69.7 75 48.0
BcaB01g01556 Brassica carinata HOM05D005777 ORTHO05D006854 9.7e-10 68.6 75 45.3
Actinidia27306 Actinidia chinensis HOM05D005777 ORTHO05D006854 2.2e-09 67.4 71 46.5
Lsat_1_v5_gn_3_40061 Lactuca sativa HOM05D005777 ORTHO05D006854 2.8e-09 67.0 85 47.1
AagrBONN_evm.TU.Sc2ySwM_368.2767 Anthoceros agrestis HOM05D005777 ORTHO05D006854 3.7e-09 66.6 134 32.8
BcaC04g21086 Brassica carinata HOM05D005777 ORTHO05D006854 4.8e-09 66.2 74 44.6
C09p35860 Brassica napus HOM05D005777 ORTHO05D006854 4.8e-09 66.2 74 44.6
BolC9t56419H Brassica oleracea HOM05D005777 ORTHO05D006854 5.3e-08 62.8 74 43.2
A09p28290 Brassica napus HOM05D005777 ORTHO05D006854 6.9e-08 62.4 70 45.7
PSO063G6181 Papaver somniferum HOM05D005777 ORTHO05D006854 2.9e-06 57.0 47 48.9
Hma1.2p1_0338F.1_g129700 Hydrangea macrophylla HOM05D005777 ORTHO05D006854 8.5e-06 55.5 63 44.4


User provided reference genes

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