Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G2541 Fragaria x ananassa HOM05D003199 ORTHO05D003528 1.7e-76 289.7 188 100.0
FAN04G2235 Fragaria x ananassa HOM05D003199 ORTHO05D003528 5.2e-54 214.9 162 82.1
FAN08G2398 Fragaria x ananassa HOM05D003199 ORTHO05D003528 5.4e-51 204.9 192 68.8
FvH4_5g07520 Fragaria vesca HOM05D003199 ORTHO05D003528 2.0e-50 203.0 160 84.4
RcHm_v2.0_Chr7g0191151 Rosa chinensis HOM05D003199 ORTHO05D003528 4.9e-20 102.1 76 71.1
MSTRG.4586 Avicennia marina HOM05D003199 ORTHO05D003528 1.5e-13 80.5 138 41.3
THA.LOC104823979 Tarenaya hassleriana HOM05D003199 ORTHO05D003528 4.9e-12 75.5 64 64.1
Eucgr.I01653 Eucalyptus grandis HOM05D003199 ORTHO05D003528 1.4e-11 73.9 151 37.7
BcaC03g17429 Brassica carinata HOM05D003199 ORTHO05D003528 2.4e-11 73.2 73 57.5
BolC2t11446H Brassica oleracea HOM05D003199 ORTHO05D003528 2.4e-11 73.2 73 57.5
Aa31LG2G5470 Aethionema arabicum HOM05D003199 ORTHO05D003528 3.2e-11 72.8 138 41.3
BcaB04g19427 Brassica carinata HOM05D003199 ORTHO05D003528 4.2e-11 72.4 61 62.3
BcaB07g30185 Brassica carinata HOM05D003199 ORTHO05D003528 4.2e-11 72.4 73 57.5
A02p35140 Brassica napus HOM05D003199 ORTHO05D003528 5.4e-11 72.0 73 56.2
C02p53770 Brassica napus HOM05D003199 ORTHO05D003528 5.4e-11 72.0 73 57.5
BraA02t08519Z Brassica rapa HOM05D003199 ORTHO05D003528 5.4e-11 72.0 78 53.8
AUR62003498 Chenopodium quinoa HOM05D003199 ORTHO05D003528 5.4e-11 72.0 137 39.4
BcaC04g23918 Brassica carinata HOM05D003199 ORTHO05D003528 7.1e-11 71.6 72 55.6
C09p03490 Brassica napus HOM05D003199 ORTHO05D003528 7.1e-11 71.6 72 55.6
BolC9t53270H Brassica oleracea HOM05D003199 ORTHO05D003528 7.1e-11 71.6 72 55.6
arahy.Tifrunner.gnm1.ann1.S1U1UA Arachis hypogaea HOM05D003199 ORTHO05D003528 1.2e-10 70.9 64 60.9
MELO3C014875.2 Cucumis melo HOM05D003199 ORTHO05D003528 1.2e-10 70.9 140 40.7
A09p03290 Brassica napus HOM05D003199 ORTHO05D003528 1.6e-10 70.5 71 54.9
BraA09t35967Z Brassica rapa HOM05D003199 ORTHO05D003528 2.1e-10 70.1 71 54.9
ClCG05G013420 Citrullus lanatus HOM05D003199 ORTHO05D003528 2.1e-10 70.1 140 40.7
Glyma.19G090000 Glycine max HOM05D003199 ORTHO05D003528 2.1e-10 70.1 139 48.2
VMungo1383G1719 Vigna mungo HOM05D003199 ORTHO05D003528 2.1e-10 70.1 140 50.0
Prupe.5G156900 Prunus persica HOM05D003199 ORTHO05D003528 2.7e-10 69.7 163 37.4
Prupe.3G305100 Prunus persica HOM05D003199 ORTHO05D003528 3.5e-10 69.3 150 36.7
Sed0014935 Sechium edule HOM05D003199 ORTHO05D003528 4.6e-10 68.9 139 38.1
Aa31LG1G18700 Aethionema arabicum HOM05D003199 ORTHO05D003528 6.0e-10 68.6 63 54.0
Sabra16G0212600 Salix brachista HOM05D003199 ORTHO05D003528 6.0e-10 68.6 64 60.9
Oeu011754.1 Olea europaea HOM05D003199 ORTHO05D003528 7.9e-10 68.2 134 38.1
CsaV3_3G027140 Cucumis sativus L. HOM05D003199 ORTHO05D003528 1.0e-09 67.8 139 40.3
Glyma.17G181000 Glycine max HOM05D003199 ORTHO05D003528 1.3e-09 67.4 139 42.4
Lalb_Chr02g0157721 Lupinus albus HOM05D003199 ORTHO05D003528 1.3e-09 67.4 138 39.1
Phvul.001G094500 Phaseolus vulgaris HOM05D003199 ORTHO05D003528 1.3e-09 67.4 141 47.5
Thhalv10004988m.g Eutrema salsugineum HOM05D003199 ORTHO05D003528 3.0e-09 66.2 60 63.3
Nitab4.5_0000040g0380 Nicotiana tabacum HOM05D003199 ORTHO05D003528 3.0e-09 66.2 139 35.3
Eucgr.J02332 Eucalyptus grandis HOM05D003199 ORTHO05D003528 5.1e-09 65.5 83 53.0
AL5G16270 Arabidopsis lyrata HOM05D003199 ORTHO05D003528 6.7e-09 65.1 60 61.7
AT3G27160 Arabidopsis thaliana HOM05D003199 ORTHO05D003528 6.7e-09 65.1 60 61.7
Carub.0005s0539 Capsella rubella HOM05D003199 ORTHO05D003528 6.7e-09 65.1 60 61.7
CAN.G473.92 Capsicum annuum HOM05D003199 ORTHO05D003528 6.7e-09 65.1 75 53.3
CARHR148360 Cardamine hirsuta HOM05D003199 ORTHO05D003528 6.7e-09 65.1 60 61.7
Lj2g0014633 Lotus japonicus HOM05D003199 ORTHO05D003528 6.7e-09 65.1 156 39.1
MD17G1012600 Malus domestica HOM05D003199 ORTHO05D003528 6.7e-09 65.1 138 35.5
Nitab4.5_0002911g0010 Nicotiana tabacum HOM05D003199 ORTHO05D003528 6.7e-09 65.1 150 34.7
THA.LOC104825617 Tarenaya hassleriana HOM05D003199 ORTHO05D003528 6.7e-09 65.1 139 48.9
CiPaw.12G035800 Carya illinoinensis HOM05D003199 ORTHO05D003528 1.1e-08 64.3 135 40.7
Duzib147G1480 Durio zibethinus HOM05D003199 ORTHO05D003528 1.1e-08 64.3 64 54.7
PGR142G2189 Punica granatum HOM05D003199 ORTHO05D003528 1.1e-08 64.3 139 36.7
Aqoxy5G03579 Aquilegia oxysepala HOM05D003199 ORTHO05D003528 1.5e-08 63.9 139 36.0
DCAR_026209 Daucus carota HOM05D003199 ORTHO05D003528 1.5e-08 63.9 63 57.1
Gohir.A09G035300 Gossypium hirsutum HOM05D003199 ORTHO05D003528 1.5e-08 63.9 61 60.7
Gohir.D09G036100 Gossypium hirsutum HOM05D003199 ORTHO05D003528 1.5e-08 63.9 61 60.7
Gorai.006G041200 Gossypium raimondii HOM05D003199 ORTHO05D003528 1.5e-08 63.9 61 60.7
Potri.001G331600 Populus trichocarpa HOM05D003199 ORTHO05D003528 1.9e-08 63.5 139 43.9
Lj4g0002784 Lotus japonicus HOM05D003199 ORTHO05D003528 2.5e-08 63.2 142 35.2
Sp2g16270 Schrenkiella parvula HOM05D003199 ORTHO05D003528 2.5e-08 63.2 60 60.0
CsaV3_1G009300 Cucumis sativus L. HOM05D003199 ORTHO05D003528 3.3e-08 62.8 140 34.3
COL.COLO4_17189 Corchorus olitorius HOM05D003199 ORTHO05D003528 7.4e-08 61.6 61 59.0
AUR62001279 Chenopodium quinoa HOM05D003199 ORTHO05D003528 9.6e-08 61.2 157 34.4
Migut.F00072 Erythranthe guttata HOM05D003199 ORTHO05D003528 9.6e-08 61.2 96 42.7
Sed0000109 Sechium edule HOM05D003199 ORTHO05D003528 9.6e-08 61.2 155 32.3
AUR62025727 Chenopodium quinoa HOM05D003199 ORTHO05D003528 1.6e-07 60.5 131 36.6
Ca_14371_v3 Cicer arietinum L. HOM05D003199 ORTHO05D003528 1.6e-07 60.5 163 35.0
Haze_14863 Corylus avellana HOM05D003199 ORTHO05D003528 1.6e-07 60.5 79 49.4
Migut.D01231 Erythranthe guttata HOM05D003199 ORTHO05D003528 1.6e-07 60.5 142 34.5
Oeu011964.1 Olea europaea HOM05D003199 ORTHO05D003528 1.6e-07 60.5 70 54.3
Atru.chr6.2549 Acer truncatum HOM05D003199 ORTHO05D003528 2.1e-07 60.1 60 56.7
Atru.chr6.2557 Acer truncatum HOM05D003199 ORTHO05D003528 2.1e-07 60.1 60 56.7
Ah.02g120420 Amaranthus hybridus HOM05D003199 ORTHO05D003528 2.1e-07 60.1 56 62.5
PGR083G2021 Punica granatum HOM05D003199 ORTHO05D003528 3.7e-07 59.3 166 45.8
Ca_05564_v3 Cicer arietinum L. HOM05D003199 ORTHO05D003528 4.8e-07 58.9 142 33.8
Cc07_g00740 Coffea canephora HOM05D003199 ORTHO05D003528 4.8e-07 58.9 138 46.4
Ah.03g147440 Amaranthus hybridus HOM05D003199 ORTHO05D003528 6.2e-07 58.5 54 64.8
Nitab4.5_0005418g0050 Nicotiana tabacum HOM05D003199 ORTHO05D003528 6.2e-07 58.5 60 60.0
RcHm_v2.0_Chr2g0175441 Rosa chinensis HOM05D003199 ORTHO05D003528 1.1e-06 57.8 157 43.9
TAR622G0507 Trochodendron aralioides HOM05D003199 ORTHO05D003528 1.1e-06 57.8 57 59.6
EL10Ac6g15370 Beta vulgaris HOM05D003199 ORTHO05D003528 1.8e-06 57.0 56 62.5
DCAR_002949 Daucus carota HOM05D003199 ORTHO05D003528 1.8e-06 57.0 81 46.9
Potri.012G092700 Populus trichocarpa HOM05D003199 ORTHO05D003528 1.8e-06 57.0 59 50.8
RcHm_v2.0_Chr2g0089001 Rosa chinensis HOM05D003199 ORTHO05D003528 1.8e-06 57.0 82 46.3
CAN.G1491.4 Capsicum annuum HOM05D003199 ORTHO05D003528 2.4e-06 56.6 150 34.7
FAN05G2482 Fragaria x ananassa HOM05D003199 ORTHO05D003528 2.4e-06 56.6 157 44.6
RcHm_v2.0_Chr2g0088911 Rosa chinensis HOM05D003199 ORTHO05D003528 2.4e-06 56.6 82 46.3
RcHm_v2.0_Chr2g0088961 Rosa chinensis HOM05D003199 ORTHO05D003528 2.4e-06 56.6 82 46.3
PGSC0003DMG400015257 Solanum tuberosum HOM05D003199 ORTHO05D003528 2.4e-06 56.6 58 58.6
MELO3C002333.2 Cucumis melo HOM05D003199 ORTHO05D003528 3.1e-06 56.2 120 34.2
unitig_52.g17653 Utricularia gibba HOM05D003199 ORTHO05D003528 3.1e-06 56.2 81 45.7
Ciclev10016867m.g Citrus clementina HOM05D003199 ORTHO05D003528 5.3e-06 55.5 139 35.3
QL02p071628 Quercus lobata HOM05D003199 ORTHO05D003528 5.3e-06 55.5 56 58.9
C02p62560 Brassica napus HOM05D003199 ORTHO05D003528 6.9e-06 55.1 141 41.8
Gohir.A07G053400 Gossypium hirsutum HOM05D003199 ORTHO05D003528 6.9e-06 55.1 59 49.2
HanXRQChr07g0198271 Helianthus annuus HOM05D003199 ORTHO05D003528 6.9e-06 55.1 56 55.4
QL10p005054 Quercus lobata HOM05D003199 ORTHO05D003528 6.9e-06 55.1 139 35.3
Sc07g0004150 Simmondsia chinensis HOM05D003199 ORTHO05D003528 6.9e-06 55.1 55 52.7
arahy.Tifrunner.gnm1.ann1.VRH5T3 Arachis hypogaea HOM05D003199 ORTHO05D003528 9.0e-06 54.7 55 56.4


User provided reference genes

Program Settings