Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G2461 Fragaria x ananassa HOM05D008195 ORTHO05D000743 1.0e-179 633.3 315 100.0
FAN08G2009 Fragaria x ananassa HOM05D008195 ORTHO05D000743 5.3e-160 567.8 367 81.5
FvH4_5g13941 Fragaria vesca HOM05D001093 ORTHO05D000743 3.8e-150 535.0 365 77.8
MD06G1202100 Malus domestica HOM05D001093 ORTHO05D000743 1.6e-47 194.1 381 37.5
QL10p019356 Quercus lobata HOM05D001093 ORTHO05D010605 5.1e-30 136.0 313 30.4
RcHm_v2.0_Chr7g0183011 Rosa chinensis HOM05D008195 ORTHO05D000743 4.8e-28 129.4 108 64.8
Prupe.5G204100 Prunus persica HOM05D008195 ORTHO05D000743 4.1e-27 126.3 145 46.9
Ciclev10020157m.g Citrus clementina HOM05D001093 ORTHO05D010605 2.2e-25 120.6 146 43.8
Duzib205G1796 Durio zibethinus HOM05D001093 ORTHO05D010605 1.0e-22 111.7 141 44.7
Duzib084G0387 Durio zibethinus HOM05D001093 ORTHO05D000743 2.2e-20 104.0 140 42.1
TAR629G0348 Trochodendron aralioides HOM05D001391 ORTHO05D000743 2.6e-18 97.1 142 38.0
TAR629G2812 Trochodendron aralioides HOM05D001093 ORTHO05D000743 6.5e-17 92.4 142 37.3
Sabra14G0029200 Salix brachista HOM05D007909 ORTHO05D000743 2.5e-16 90.5 146 37.0
Nn3g17441 Nelumbo nucifera HOM05D001093 ORTHO05D000743 7.2e-16 89.0 155 34.2
Potri.014G040100 Populus trichocarpa HOM05D007909 ORTHO05D000743 7.2e-16 89.0 146 35.6
Actinidia16122 Actinidia chinensis HOM05D001093 ORTHO05D000743 6.1e-15 85.9 154 34.4
TAR264G0006 Trochodendron aralioides HOM05D001093 ORTHO05D000743 8.0e-15 85.5 143 35.7
Cfa019304 Carpinus fangiana HOM05D001093 ORTHO05D000743 2.3e-14 84.0 140 35.7
Haze_07714 Corylus avellana HOM05D007909 ORTHO05D000743 6.7e-14 82.4 142 33.8
Prupe.5G204000 Prunus persica HOM05D001093 ORTHO05D010605 2.6e-13 80.5 126 46.0
Dinv17406 Davidia involucrata HOM05D001093 ORTHO05D000743 4.4e-13 79.7 286 25.9
PSO541G3559 Papaver somniferum HOM05D001093 ORTHO05D000743 5.7e-13 79.3 140 36.4
Aqoxy3G03627 Aquilegia oxysepala HOM05D001093 ORTHO05D000743 9.7e-13 78.6 142 35.2
Dinv22785 Davidia involucrata HOM05D001093 ORTHO05D000743 9.7e-13 78.6 163 31.3
PSO675G5193 Papaver somniferum HOM05D001093 ORTHO05D000743 9.7e-13 78.6 140 35.7
CiPaw.12G008400 Carya illinoinensis HOM05D007909 ORTHO05D000743 1.7e-12 77.8 162 29.0
ATR0064G095 Amborella trichopoda HOM05D001093 ORTHO05D000743 2.8e-12 77.0 147 31.3
Haze_07687 Corylus avellana HOM05D007909 ORTHO05D000743 2.8e-12 77.0 126 35.7
Aqoxy3G00533 Aquilegia oxysepala HOM05D001093 ORTHO05D000743 3.7e-12 76.6 159 31.4
Atru.chr9.429 Acer truncatum HOM05D007909 ORTHO05D000743 4.8e-12 76.3 146 31.5
CSS0005519 Camellia sinensis var. sinensis HOM05D001093 ORTHO05D000743 6.3e-12 75.9 152 30.9
Rhsim12G0151100 Rhododendron simsii HOM05D001093 ORTHO05D000743 6.3e-12 75.9 172 29.1
Rhsim08G0146400 Rhododendron simsii HOM05D001093 ORTHO05D000743 8.2e-12 75.5 157 32.5
RcHm_v2.0_Chr7g0183021 Rosa chinensis HOM05D007909 ORTHO05D000743 8.2e-12 75.5 172 29.7
Actinidia35035 Actinidia chinensis HOM05D001093 ORTHO05D000743 1.1e-11 75.1 181 30.9
TWI60G0473 Tripterygium wilfordii HOM05D007909 ORTHO05D000743 1.1e-11 75.1 147 32.0
vmacro16499 Vaccinium macrocarpon HOM05D001093 ORTHO05D000743 1.1e-11 75.1 172 29.1
Actinidia16168 Actinidia chinensis HOM05D008195 ORTHO05D000743 2.4e-11 73.9 124 34.7
Psat0s231g0040 Pisum sativum HOM05D001093 ORTHO05D000743 7.0e-11 72.4 147 36.1
Aqoxy3G03628 Aquilegia oxysepala HOM05D001093 ORTHO05D000743 2.0e-10 70.9 229 24.9
Cfa019324 Carpinus fangiana HOM05D007909 ORTHO05D000743 5.9e-10 69.3 128 32.8
Oeu047262.2 Olea europaea HOM05D001093 ORTHO05D000743 7.7e-10 68.9 140 32.1
Glyma.06G202900 Glycine max HOM05D007909 ORTHO05D000743 1.0e-09 68.6 146 32.9
QL03p074129 Quercus lobata HOM05D007909 ORTHO05D000743 1.0e-09 68.6 226 27.9
QL03p074219 Quercus lobata HOM05D007909 ORTHO05D000743 1.0e-09 68.6 150 30.0
Actinidia27478 Actinidia chinensis HOM05D001093 ORTHO05D000743 1.3e-09 68.2 140 32.1
SGA_v2.0_scaffold313G48311 Striga asiatica HOM05D001093 ORTHO05D000743 1.3e-09 68.2 160 28.1
CSS0000288 Camellia sinensis var. sinensis HOM05D001093 ORTHO05D000743 1.7e-09 67.8 146 30.8
AUR62026754 Chenopodium quinoa HOM05D001093 ORTHO05D000743 1.7e-09 67.8 140 31.4
QL10p019376 Quercus lobata HOM05D000003 ORTHO05D000004 1.7e-09 67.8 173 28.9
Cpa.g.sc49.46 Carica papaya HOM05D001093 ORTHO05D000743 2.2e-09 67.4 201 28.4
QL03p072752 Quercus lobata HOM05D001093 ORTHO05D000743 2.2e-09 67.4 128 32.8
vmacro17606 Vaccinium macrocarpon HOM05D001093 ORTHO05D000743 2.2e-09 67.4 128 32.0
Migut.I00329 Erythranthe guttata HOM05D001093 ORTHO05D000743 3.8e-09 66.6 162 27.8
Peaxi162Scf00842g00328 Petunia axillaris HOM05D001093 ORTHO05D000743 3.8e-09 66.6 158 27.2
Ah.11g047850 Amaranthus hybridus HOM05D008195 ORTHO05D000743 5.0e-09 66.2 172 30.2
Cpa.g.sc49.44 Carica papaya HOM05D001093 ORTHO05D000743 5.0e-09 66.2 139 30.2
QL03p072663 Quercus lobata HOM05D001093 ORTHO05D000743 5.0e-09 66.2 128 32.0
Sed0006161 Sechium edule HOM05D001093 ORTHO05D000743 5.0e-09 66.2 141 26.2
Sopen06g021820 Solanum pennellii HOM05D008195 ORTHO05D000743 5.0e-09 66.2 185 26.5
CANSAT80G0086 Cannabis sativa HOM05D007909 ORTHO05D000743 6.5e-09 65.9 145 29.7
Manes.14G085201 Manihot esculenta HOM05D001093 ORTHO05D000743 6.5e-09 65.9 217 32.3
Solyc06g066200.2 Solanum lycopersicum HOM05D008195 ORTHO05D000743 6.5e-09 65.9 185 25.9
PGSC0003DMG400024640 Solanum tuberosum HOM05D008195 ORTHO05D000743 6.5e-09 65.9 148 30.4
CiPaw.15G019400 Carya illinoinensis HOM05D001093 ORTHO05D000743 8.5e-09 65.5 145 31.7
Cc10_g14180 Coffea canephora HOM05D001093 ORTHO05D000743 8.5e-09 65.5 140 29.3
FvH4_4g13540 Fragaria vesca HOM05D007909 ORTHO05D000743 8.5e-09 65.5 149 29.5
Lalb_Chr23g0273991 Lupinus albus HOM05D001093 ORTHO05D000743 8.5e-09 65.5 163 28.2
TPR.G19667 Trifolium pratense HOM05D007909 ORTHO05D000743 8.5e-09 65.5 148 31.1
Atru.chr13.1216 Acer truncatum HOM05D007909 ORTHO05D000743 1.1e-08 65.1 169 29.0
arahy.Tifrunner.gnm1.ann1.7R0RVH Arachis hypogaea HOM05D001093 ORTHO05D000743 1.1e-08 65.1 148 27.0
Ca_26164_v3 Cicer arietinum L. HOM05D001093 ORTHO05D000743 1.1e-08 65.1 147 33.3
Dinv41107 Davidia involucrata HOM05D001093 ORTHO05D000743 1.1e-08 65.1 156 29.5
Duzib205G0904 Durio zibethinus HOM05D007909 ORTHO05D000743 1.1e-08 65.1 132 30.3
ECA247G2835 Erigeron canadensis HOM05D001093 ORTHO05D000743 1.5e-08 64.7 143 30.8
ClCG09G009890 Citrullus lanatus HOM05D001093 ORTHO05D000743 1.9e-08 64.3 140 25.7
FAN17G0179 Fragaria x ananassa HOM05D000009 ORTHO05D000008 1.9e-08 64.3 149 29.5
Sopen04g004530 Solanum pennellii HOM05D001093 ORTHO05D000743 1.9e-08 64.3 172 25.6
arahy.Tifrunner.gnm1.ann1.ER6SHV Arachis hypogaea HOM05D008195 ORTHO05D000743 2.5e-08 63.9 148 27.0
Glyma.06G203100 Glycine max HOM05D007909 ORTHO05D000743 2.5e-08 63.9 138 29.7
QL03p074381 Quercus lobata HOM05D007909 ORTHO05D000743 2.5e-08 63.9 204 27.5
QL12p030770 Quercus lobata HOM05D007909 ORTHO05D000743 2.5e-08 63.9 204 27.9
CSS0013878 Camellia sinensis var. sinensis HOM05D001093 ORTHO05D000743 3.2e-08 63.5 145 29.0
CANSAT80G0598 Cannabis sativa HOM05D007909 ORTHO05D000743 3.2e-08 63.5 153 30.1
CsaV3_7G024810 Cucumis sativus L. HOM05D001093 ORTHO05D000743 3.2e-08 63.5 140 25.7
Prupe.5G204200 Prunus persica HOM05D007909 ORTHO05D000743 3.2e-08 63.5 144 30.6
Sc12g0006650 Simmondsia chinensis HOM05D001093 ORTHO05D000743 3.2e-08 63.5 149 29.5
Solyc04g009400.4 Solanum lycopersicum HOM05D001093 ORTHO05D000743 3.2e-08 63.5 157 25.5
CAN.G111.39 Capsicum annuum HOM05D008195 ORTHO05D000743 4.2e-08 63.2 285 23.5
QL03p074255 Quercus lobata HOM05D007909 ORTHO05D000743 4.2e-08 63.2 204 27.9
MELO3C024101.2 Cucumis melo HOM05D001093 ORTHO05D000743 5.5e-08 62.8 140 25.7
Medtr3g025330 Medicago truncatula HOM05D001093 ORTHO05D010605 5.5e-08 62.8 146 29.5
Lj1g0000797 Lotus japonicus HOM05D007909 ORTHO05D000743 7.2e-08 62.4 142 29.6
Nitab4.5_0000504g0100 Nicotiana tabacum HOM05D001093 ORTHO05D000743 7.2e-08 62.4 154 27.3
PGSC0003DMG400020472 Solanum tuberosum HOM05D008195 ORTHO05D000743 7.2e-08 62.4 161 27.3
VMungo1309G2619 Vigna mungo HOM05D007909 ORTHO05D000743 7.2e-08 62.4 152 27.6
Atru.chr5.93 Acer truncatum HOM05D001093 ORTHO05D000743 9.4e-08 62.0 140 30.0
AUR62021572 Chenopodium quinoa HOM05D001093 ORTHO05D000743 9.4e-08 62.0 145 28.3
Solyc03g115160.3 Solanum lycopersicum HOM05D008195 ORTHO05D000743 9.4e-08 62.0 140 29.3
Sopen03g034220 Solanum pennellii HOM05D008195 ORTHO05D000743 9.4e-08 62.0 140 29.3
Sopen06g024610 Solanum pennellii HOM05D008195 ORTHO05D000743 9.4e-08 62.0 150 28.0
Cc00_g03840 Coffea canephora HOM05D001093 ORTHO05D000743 1.2e-07 61.6 123 32.5
Lj2g0007742 Lotus japonicus HOM05D001093 ORTHO05D000743 1.2e-07 61.6 140 28.6
Lj2g0008242 Lotus japonicus HOM05D001093 ORTHO05D000743 1.2e-07 61.6 140 30.7
Nitab4.5_0004819g0010 Nicotiana tabacum HOM05D001093 ORTHO05D000743 1.2e-07 61.6 154 26.6
Solyc04g050720.4 Solanum lycopersicum HOM05D001093 ORTHO05D000743 1.2e-07 61.6 140 29.3
Sopen04g021630 Solanum pennellii HOM05D001093 ORTHO05D000743 1.2e-07 61.6 140 29.3
Ciclev10000763m.g Citrus clementina HOM05D001093 ORTHO05D000743 1.6e-07 61.2 297 23.6
Haze_17729 Corylus avellana HOM05D000026 ORTHO05D001292 1.6e-07 61.2 156 28.8
Thecc.03G101000 Theobroma cacao HOM05D007909 ORTHO05D000743 1.6e-07 61.2 146 30.1
MSTRG.22985 Avicennia marina HOM05D001093 ORTHO05D000743 2.1e-07 60.8 142 30.3
AUR62008519 Chenopodium quinoa HOM05D001093 ORTHO05D000743 2.1e-07 60.8 152 28.3
Glyma.04G214800 Glycine max HOM05D001093 ORTHO05D000743 2.1e-07 60.8 151 29.1
SalBow5G5623 Salvia bowleyana HOM05D001093 ORTHO05D000743 2.1e-07 60.8 140 30.7
CAN.G4.14 Capsicum annuum HOM05D001093 ORTHO05D000743 2.7e-07 60.5 140 29.3
Dinv11327 Davidia involucrata HOM05D001093 ORTHO05D000743 2.7e-07 60.5 153 26.8
Duzib116G0600 Durio zibethinus HOM05D001093 ORTHO05D000743 2.7e-07 60.5 149 27.5
QL02p024630 Quercus lobata HOM05D001093 ORTHO05D000743 2.7e-07 60.5 151 26.5
Sopen06g021660 Solanum pennellii HOM05D000006 ORTHO05D000001 2.7e-07 60.5 161 25.5
Thecc.08G147000 Theobroma cacao HOM05D001093 ORTHO05D000743 2.7e-07 60.5 166 25.9
PSO801G0246 Papaver somniferum HOM05D001093 ORTHO05D000743 3.6e-07 60.1 165 27.9
TWI60G1066 Tripterygium wilfordii HOM05D001093 ORTHO05D000743 3.6e-07 60.1 146 27.4
AUR62013521 Chenopodium quinoa HOM05D001093 ORTHO05D000743 4.7e-07 59.7 140 28.6
Phvul.009G191600 Phaseolus vulgaris HOM05D007909 ORTHO05D000743 4.7e-07 59.7 146 30.8
Lj5A103G64 Lonicera japonica HOM05D001093 ORTHO05D000743 6.1e-07 59.3 140 27.1
Phvul.009G191900 Phaseolus vulgaris HOM05D007909 ORTHO05D000743 6.1e-07 59.3 146 29.5
PGSC0003DMG400026134 Solanum tuberosum HOM05D008195 ORTHO05D000743 6.1e-07 59.3 150 27.3
Migut.C01022 Erythranthe guttata HOM05D001093 ORTHO05D000743 8.0e-07 58.9 158 25.9
Manes.06G085200 Manihot esculenta HOM05D007909 ORTHO05D010605 8.0e-07 58.9 126 31.7
Peaxi162Scf00071g00201 Petunia axillaris HOM05D001093 ORTHO05D000743 8.0e-07 58.9 156 25.6
Sed0028074 Sechium edule HOM05D007909 ORTHO05D000743 8.0e-07 58.9 175 25.7
MD14G1211300 Malus domestica HOM05D007909 ORTHO05D000743 1.0e-06 58.5 130 28.5
Hund02591 Selenicereus undatus HOM05D001093 ORTHO05D000743 1.0e-06 58.5 140 27.1
Solyc06g066360.3 Solanum lycopersicum HOM05D008195 ORTHO05D000743 1.0e-06 58.5 162 23.5
CSS0005802 Camellia sinensis var. sinensis HOM05D001093 ORTHO05D000743 1.4e-06 58.2 157 26.8
CSS0044048 Camellia sinensis var. sinensis HOM05D001093 ORTHO05D000743 1.4e-06 58.2 157 26.8
Actinidia01147 Actinidia chinensis HOM05D001093 ORTHO05D000743 1.8e-06 57.8 142 29.6
Dinv25836 Davidia involucrata HOM05D001093 ORTHO05D000743 1.8e-06 57.8 149 27.5
Lsat_1_v5_gn_8_117260 Lactuca sativa HOM05D001093 ORTHO05D000743 1.8e-06 57.8 164 26.2
PGR083G1305 Punica granatum HOM05D007909 ORTHO05D000022 1.8e-06 57.8 143 27.3
Glyma.04G163100 Glycine max HOM05D007909 ORTHO05D000743 2.3e-06 57.4 141 28.4
Os03g0421000 Oryza sativa ssp. japonica HOM05D001093 ORTHO05D000743 2.3e-06 57.4 204 25.5
CsaV3_1G005950 Cucumis sativus L. HOM05D007909 ORTHO05D000743 3.0e-06 57.0 125 27.2
Dinv05707 Davidia involucrata HOM05D001093 ORTHO05D000743 3.0e-06 57.0 194 23.2
Peaxi162Scf00201g00235 Petunia axillaris HOM05D008195 ORTHO05D000743 3.0e-06 57.0 140 28.6
EL10Ac5g11120 Beta vulgaris HOM05D015602 ORTHO05D006373 4.0e-06 56.6 155 27.7
MELO3C002025.2 Cucumis melo HOM05D007909 ORTHO05D000743 5.2e-06 56.2 125 27.2
MBI19_g05297_MAGBIO Magnolia biondii HOM05D001093 ORTHO05D000743 5.2e-06 56.2 140 27.1
PSO339G4557 Papaver somniferum HOM05D001093 ORTHO05D000743 5.2e-06 56.2 165 27.3
Phvul.007G078100 Phaseolus vulgaris HOM05D001093 ORTHO05D000743 5.2e-06 56.2 140 27.1
HPP92_004390 Vanilla planifolia HOM05D001093 ORTHO05D000743 5.2e-06 56.2 147 27.2
HPP92_027188 Vanilla planifolia HOM05D001093 ORTHO05D000743 5.2e-06 56.2 147 27.2


User provided reference genes

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