Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G2118 Fragaria x ananassa HOM05D001551 ORTHO05D005859 2.4e-156 555.4 280 100.0
FvH4_5g09710 Fragaria vesca HOM05D001551 ORTHO05D005859 7.0e-156 553.9 280 99.6
FAN04G0171 Fragaria x ananassa HOM05D001551 ORTHO05D005859 1.2e-155 553.1 280 99.3
FAN13G0525 Fragaria x ananassa HOM05D001551 ORTHO05D005859 1.1e-151 540.0 280 96.8
FAN08G3006 Fragaria x ananassa HOM05D001551 ORTHO05D005859 4.9e-149 531.2 282 95.4
RcHm_v2.0_Chr7g0188531 Rosa chinensis HOM05D001551 ORTHO05D005859 1.4e-148 529.6 280 93.2
MD14G1145900 Malus domestica HOM05D001551 ORTHO05D005859 3.5e-139 498.4 280 86.4
Prupe.5G140300 Prunus persica HOM05D001551 ORTHO05D005859 2.3e-138 495.7 280 85.7
MD06G1129000 Malus domestica HOM05D001551 ORTHO05D005859 3.9e-138 495.0 280 86.1
Thecc.03G141800 Theobroma cacao HOM05D001551 ORTHO05D005859 8.7e-130 467.2 280 81.1
QL10p000300 Quercus lobata HOM05D001551 ORTHO05D005859 7.3e-129 464.2 253 85.0
Cpa.g.sc2215.3 Carica papaya HOM05D001551 ORTHO05D005859 1.6e-128 463.0 252 85.7
Potri.012G109800 Populus trichocarpa HOM05D001551 ORTHO05D005859 1.1e-127 460.3 271 80.8
TWI23G1313 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 1.2e-126 456.8 281 79.0
Sabra12G0080000 Salix brachista HOM05D001551 ORTHO05D005859 1.5e-126 456.4 279 78.5
COL.COLO4_37269 Corchorus olitorius HOM05D001551 ORTHO05D005859 2.2e-125 452.6 278 77.3
TAR629G2635 Trochodendron aralioides HOM05D001551 ORTHO05D005859 2.9e-125 452.2 271 77.9
Phvul.009G160500 Phaseolus vulgaris HOM05D001551 ORTHO05D005859 6.4e-125 451.1 271 78.6
Cfa018920 Carpinus fangiana HOM05D001551 ORTHO05D005859 8.4e-125 450.7 254 81.9
Duzib205G1491 Durio zibethinus HOM05D001551 ORTHO05D005859 8.4e-125 450.7 280 78.6
Gohir.A11G038800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 1.9e-124 449.5 256 82.8
arahy.Tifrunner.gnm1.ann1.D8JD58 Arachis hypogaea HOM05D001551 ORTHO05D005859 4.2e-124 448.4 252 81.3
arahy.Tifrunner.gnm1.ann1.Q2CTBB Arachis hypogaea HOM05D001551 ORTHO05D005859 4.2e-124 448.4 252 81.3
Manes.14G043800 Manihot esculenta HOM05D001551 ORTHO05D005859 7.1e-124 447.6 280 76.8
Glyma.04G202400 Glycine max HOM05D001551 ORTHO05D005859 1.2e-123 446.8 252 82.1
Gohir.A03G055800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 1.6e-123 446.4 256 81.6
Gohir.D11G042000 Gossypium hirsutum HOM05D001551 ORTHO05D005859 1.6e-123 446.4 256 82.0
Hma1.2p1_0577F.1_g182180 Hydrangea macrophylla HOM05D001551 ORTHO05D005859 1.6e-123 446.4 256 82.0
Atru.chr6.1937 Acer truncatum HOM05D001551 ORTHO05D005859 2.1e-123 446.0 252 82.5
Lj1g0018460 Lotus japonicus HOM05D001551 ORTHO05D005859 2.7e-123 445.7 252 80.6
CiPaw.12G000400 Carya illinoinensis HOM05D001551 ORTHO05D005859 3.5e-123 445.3 252 81.3
Cc04_g05770 Coffea canephora HOM05D001551 ORTHO05D005859 6.0e-123 444.5 252 82.1
PGR044G0460 Punica granatum HOM05D001551 ORTHO05D005859 6.0e-123 444.5 257 81.3
GSVIVG01008663001 Vitis vinifera HOM05D001551 ORTHO05D005859 6.0e-123 444.5 281 76.5
Cfa018698 Carpinus fangiana HOM05D001551 ORTHO05D005859 2.3e-122 442.6 254 81.1
Glyma.06G163100 Glycine max HOM05D001551 ORTHO05D005859 8.7e-122 440.7 251 80.1
Gorai.003G117100 Gossypium raimondii HOM05D001551 ORTHO05D005859 1.5e-121 439.9 280 76.4
Lj9C488G12 Lonicera japonica HOM05D001551 ORTHO05D005859 1.5e-121 439.9 258 80.6
Ca_10874_v3 Cicer arietinum L. HOM05D001551 ORTHO05D005859 1.9e-121 439.5 252 80.6
Ciclev10032408m.g Citrus clementina HOM05D001551 ORTHO05D005859 2.5e-121 439.1 270 76.7
Gorai.007G045200 Gossypium raimondii HOM05D001551 ORTHO05D005859 2.5e-121 439.1 257 81.3
BraA01t01589Z Brassica rapa HOM05D001551 ORTHO05D005859 5.6e-121 438.0 275 76.7
Lalb_Chr08g0237601 Lupinus albus HOM05D001551 ORTHO05D005859 9.6e-121 437.2 280 73.6
HanXRQChr05g0155371 Helianthus annuus HOM05D001551 ORTHO05D005859 1.3e-120 436.8 262 79.0
A01p16340 Brassica napus HOM05D001551 ORTHO05D005859 1.6e-120 436.4 275 76.4
MSTRG.22814 Avicennia marina HOM05D001551 ORTHO05D005859 2.1e-120 436.0 280 76.1
C01p20490 Brassica napus HOM05D001551 ORTHO05D005859 2.8e-120 435.6 275 76.4
MELO3C002387.2 Cucumis melo HOM05D001551 ORTHO05D005859 3.6e-120 435.3 251 80.9
BcaC09g50811 Brassica carinata HOM05D001551 ORTHO05D005859 4.8e-120 434.9 274 75.9
BcaNung03998 Brassica carinata HOM05D001551 ORTHO05D005859 6.2e-120 434.5 275 76.0
Eucgr.K02189 Eucalyptus grandis HOM05D001551 ORTHO05D005859 6.2e-120 434.5 256 78.1
Aa31LG3G7480 Aethionema arabicum HOM05D001551 ORTHO05D005859 8.1e-120 434.1 274 76.3
Haze_07303 Corylus avellana HOM05D006543 ORTHO05D008308 1.1e-119 433.7 247 81.8
CsaV3_1G009930 Cucumis sativus L. HOM05D001551 ORTHO05D005859 1.4e-119 433.3 251 80.5
Medtr3g098510 Medicago truncatula HOM05D001551 ORTHO05D005859 1.8e-119 433.0 252 78.2
Solyc06g068760.3 Solanum lycopersicum HOM05D001551 ORTHO05D005859 1.8e-119 433.0 280 75.4
TAR371G0091 Trochodendron aralioides HOM05D001551 ORTHO05D005859 2.4e-119 432.6 271 76.8
Rhsim12G0181300 Rhododendron simsii HOM05D001551 ORTHO05D005859 3.1e-119 432.2 257 79.8
Aqoxy5G03068 Aquilegia oxysepala HOM05D001551 ORTHO05D005859 5.3e-119 431.4 252 77.4
Sed0027340 Sechium edule HOM05D001551 ORTHO05D005859 5.3e-119 431.4 250 78.8
Manes.06G127400 Manihot esculenta HOM05D001551 ORTHO05D005859 6.9e-119 431.0 256 81.2
PSO017G1738 Papaver somniferum HOM05D001551 ORTHO05D005859 6.9e-119 431.0 271 76.4
CSS0002484 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 1.2e-118 430.3 278 75.2
SalBow7G1162 Salvia bowleyana HOM05D001551 ORTHO05D005859 1.2e-118 430.3 277 75.8
BolC1t01980H Brassica oleracea HOM05D001551 ORTHO05D005859 2.0e-118 429.5 275 75.3
CSS0038575 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 2.0e-118 429.5 280 75.0
CARHR257170 Cardamine hirsuta HOM05D001551 ORTHO05D005859 2.6e-118 429.1 278 74.8
Lsat_1_v5_gn_5_9381 Lactuca sativa HOM05D001551 ORTHO05D005859 2.6e-118 429.1 264 77.7
PSO478G5149 Papaver somniferum HOM05D001551 ORTHO05D005859 3.4e-118 428.7 271 76.0
Sopen06g026040 Solanum pennellii HOM05D001551 ORTHO05D005859 4.5e-118 428.3 281 75.1
PGSC0003DMG400025575 Solanum tuberosum HOM05D001551 ORTHO05D005859 4.5e-118 428.3 281 75.1
AT5G51020 Arabidopsis thaliana HOM05D001551 ORTHO05D005859 7.6e-118 427.6 278 74.5
Sp6g13170 Schrenkiella parvula HOM05D001551 ORTHO05D005859 1.7e-117 426.4 272 75.0
AL8G25230 Arabidopsis lyrata HOM05D001551 ORTHO05D005859 2.2e-117 426.0 278 74.1
CAN.G1089.16 Capsicum annuum HOM05D001551 ORTHO05D005859 2.2e-117 426.0 281 75.1
Migut.I00664 Erythranthe guttata HOM05D001551 ORTHO05D005859 8.4e-117 424.1 256 78.5
Nitab4.5_0007345g0100 Nicotiana tabacum HOM05D001551 ORTHO05D005859 1.4e-116 423.3 278 76.3
EL10Ac5g11272 Beta vulgaris HOM05D001551 ORTHO05D005859 4.2e-116 421.8 280 71.8
THA.LOC104808046 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 5.4e-116 421.4 257 77.8
Nitab4.5_0012775g0030 Nicotiana tabacum HOM05D001551 ORTHO05D005859 7.1e-116 421.0 278 75.5
BraA03t10931Z Brassica rapa HOM05D001551 ORTHO05D005859 9.3e-116 420.6 271 74.2
Carub.0008s1102 Capsella rubella HOM05D001551 ORTHO05D005859 9.3e-116 420.6 256 77.0
Actinidia36846 Actinidia chinensis HOM05D001551 ORTHO05D005859 1.6e-115 419.9 256 78.9
Rhsim08G0198700 Rhododendron simsii HOM05D001551 ORTHO05D005859 2.7e-115 419.1 250 78.8
Psat5g055440 Pisum sativum HOM05D001551 ORTHO05D005859 6.0e-115 417.9 252 75.4
Actinidia08913 Actinidia chinensis HOM05D001551 ORTHO05D005859 1.3e-114 416.8 280 73.2
Sc04g0000180 Simmondsia chinensis HOM05D001551 ORTHO05D005859 3.9e-114 415.2 269 72.1
vmacro16761 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 1.1e-113 413.7 285 73.3
AUR62043378 Chenopodium quinoa HOM05D001551 ORTHO05D005859 1.5e-113 413.3 276 71.0
AUR62032208 Chenopodium quinoa HOM05D001551 ORTHO05D005859 7.4e-113 411.0 274 71.5
THA.LOC104811554 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 2.8e-112 409.1 252 77.4
Sp7g23070 Schrenkiella parvula HOM05D001551 ORTHO05D005859 4.8e-112 408.3 275 72.4
unitig_27.g25103 Utricularia gibba HOM05D001551 ORTHO05D005859 6.2e-112 407.9 252 75.8
vmacro19115 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 8.1e-112 407.5 250 76.4
CDE02G1325 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 2.4e-111 406.0 251 73.7
A03p16410 Brassica napus HOM05D001551 ORTHO05D005859 5.3e-111 404.8 296 67.9
Gohir.D03G110700 Gossypium hirsutum HOM05D001551 ORTHO05D005859 6.9e-111 404.4 253 77.5
BcaC01g06112 Brassica carinata HOM05D001551 ORTHO05D005859 1.5e-110 403.3 274 72.3
Hund10026 Selenicereus undatus HOM05D001551 ORTHO05D005859 2.0e-110 402.9 249 74.7
Sed0019000 Sechium edule HOM05D001551 ORTHO05D005859 3.8e-109 398.7 276 70.3
TWI39G0428 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 1.1e-108 397.1 269 72.9
Peaxi162Scf00207g00254 Petunia axillaris HOM05D001551 ORTHO05D005859 4.2e-108 395.2 281 72.2
SGA_v2.0_scaffold5G02806 Striga asiatica HOM05D001551 ORTHO05D005859 1.0e-106 390.6 283 68.9
Oeu051186.2 Olea europaea HOM05D001551 ORTHO05D005859 8.7e-106 387.5 296 65.5
DCAR_025640 Daucus carota HOM05D001551 ORTHO05D005859 2.5e-105 386.0 256 73.8
Os11g0524300 Oryza sativa ssp. japonica HOM05D001551 ORTHO05D005859 7.4e-105 384.4 231 72.7
Zm00001eb170550 Zea mays HOM05D001551 ORTHO05D005859 8.2e-104 380.9 231 72.7
Actinidia18288 Actinidia chinensis HOM05D001551 ORTHO05D005859 3.4e-102 375.6 235 74.9
Thhalv10014437m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 1.0e-101 374.0 212 80.7
Dinv13710 Davidia involucrata HOM05D001551 ORTHO05D005859 1.7e-101 373.2 209 82.3
MBI07_g13940_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 2.2e-101 372.9 286 66.1
ClCG03G004050 Citrullus lanatus HOM05D001551 ORTHO05D005859 6.5e-101 371.3 230 74.3
SGA_v2.0_scaffold37G14673 Striga asiatica HOM05D001551 ORTHO05D005859 1.0e-98 364.0 230 75.7
Mapoly0002s0145 Marchantia polymorpha HOM05D001551 ORTHO05D005859 7.4e-97 357.8 234 69.2
Pp3c6_23000 Physcomitrium patens HOM05D001551 ORTHO05D005859 4.8e-96 355.1 241 69.7
AagrBONN_evm.TU.Sc2ySwM_368.1985 Anthoceros agrestis HOM05D001551 ORTHO05D005859 6.3e-96 354.8 223 68.6
Pp3c5_10130 Physcomitrium patens HOM05D001551 ORTHO05D005859 2.4e-95 352.8 225 68.9
TPR.G16934 Trifolium pratense HOM05D001551 ORTHO05D005859 5.0e-93 345.1 191 80.6
AUR62011939 Chenopodium quinoa HOM05D001551 ORTHO05D005859 1.9e-92 343.2 277 62.1
SMO118G0459 Selaginella moellendorffii HOM05D001551 ORTHO05D005859 2.5e-92 342.8 222 68.0
Actinidia25511 Actinidia chinensis HOM05D001551 ORTHO05D005859 1.0e-90 337.4 221 71.9
Haze_07088 Corylus avellana HOM05D001551 ORTHO05D005859 5.1e-90 335.1 231 69.3
Nn4g22121 Nelumbo nucifera HOM05D001551 ORTHO05D005859 6.3e-88 328.2 256 62.9
AUR62043863 Chenopodium quinoa HOM05D001551 ORTHO05D005859 1.8e-87 326.6 323 54.5
Nn3g16260 Nelumbo nucifera HOM05D001551 ORTHO05D005859 9.4e-84 314.3 164 83.5
Hund02515 Selenicereus undatus HOM05D001551 ORTHO05D005859 2.3e-82 309.7 283 58.3
CBR_g30803 Chara braunii HOM05D001551 ORTHO05D005859 6.3e-80 301.6 215 60.0
SEGI_34423 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 1.3e-77 293.9 198 65.7
Duzib084G0881 Durio zibethinus HOM05D001551 ORTHO05D005859 5.5e-76 288.5 162 81.5
Dinv23235 Davidia involucrata HOM05D001551 ORTHO05D005859 1.6e-75 287.0 167 80.2
Thhalv10025970m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 8.8e-66 254.6 160 79.4
MBI07_g35983_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 3.4e-65 252.7 163 75.5
MBI07_g48061_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 2.0e-62 243.4 138 79.7
HPP92_009738 Vanilla planifolia HOM05D001551 ORTHO05D005859 1.7e-61 240.4 241 53.9
CDE06G0746 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 9.1e-55 218.0 205 56.1
Sc04g0000140 Simmondsia chinensis HOM05D001551 ORTHO05D005859 4.0e-50 202.6 121 74.4
Sc04g0000130 Simmondsia chinensis HOM05D001551 ORTHO05D005859 1.4e-47 194.1 113 78.8
CSS0038626 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 7.1e-31 138.7 105 65.7
FvH4_6g04500 Fragaria vesca HOM05D001551 ORTHO05D005859 1.9e-28 130.6 72 86.1
CSS0016811 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 9.5e-28 128.3 81 77.8
Psat3g122800 Pisum sativum HOM05D001551 ORTHO05D005859 2.6e-25 120.2 81 71.6
SEGI_13041 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 4.9e-24 115.9 66 71.2
Pp3c16_270 Physcomitrium patens HOM05D001551 ORTHO05D005859 1.0e-21 108.2 65 70.8
ECA246G1749 Erigeron canadensis HOM05D001551 ORTHO05D005859 5.6e-20 102.4 62 75.8
HanXRQChr05g0130591 Helianthus annuus HOM05D001551 ORTHO05D005859 1.2e-17 94.7 52 78.8
Psat7g261640 Pisum sativum HOM05D001551 ORTHO05D005859 2.9e-16 90.1 82 57.3
Cfa013473 Carpinus fangiana HOM05D001551 ORTHO05D005859 3.2e-15 86.7 63 69.8
Sabra15G0128500 Salix brachista HOM05D001551 ORTHO05D003058 4.6e-14 82.8 68 58.8
BcaC01g06064 Brassica carinata HOM05D001551 ORTHO05D005859 1.0e-13 81.6 91 51.6
C03p19300 Brassica napus HOM05D001551 ORTHO05D042173 5.6e-12 75.9 73 49.3
Psat5g306440 Pisum sativum HOM05D001551 ORTHO05D006558 3.6e-11 73.2 70 57.1
Duzib084G0670 Durio zibethinus HOM05D001551 ORTHO05D005859 2.4e-10 70.5 47 78.7
Ah.11g046990 Amaranthus hybridus HOM05D001551 ORTHO05D005859 7.6e-09 65.5 50 62.0
Ah.02g114530 Amaranthus hybridus HOM05D001551 ORTHO05D005859 8.4e-08 62.0 47 61.7
SEGI_34327 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 1.4e-07 61.2 88 53.4


User provided reference genes

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