Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g12540 Fragaria vesca HOM05D003846 ORTHO05D004726 3.0e-87 325.1 159 100.0
FAN04G0089 Fragaria x ananassa HOM05D003846 ORTHO05D004726 3.0e-87 325.1 159 100.0
FAN18G2095 Fragaria x ananassa HOM05D003846 ORTHO05D004726 3.0e-87 325.1 159 100.0
FAN18G2723 Fragaria x ananassa HOM05D003846 ORTHO05D004726 3.0e-87 325.1 159 100.0
FAN08G1200 Fragaria x ananassa HOM05D003846 ORTHO05D004726 3.9e-87 324.7 159 99.4
FAN13G1296 Fragaria x ananassa HOM05D003846 ORTHO05D004726 1.1e-86 323.2 159 99.4
RcHm_v2.0_Chr7g0184811 Rosa chinensis HOM05D003846 ORTHO05D004726 1.5e-83 312.8 159 97.5
Prupe.5G218600 Prunus persica HOM05D003846 ORTHO05D004726 1.0e-74 283.5 159 88.1
MD14G1223300 Malus domestica HOM05D003846 ORTHO05D004726 3.8e-74 281.6 159 86.8
MELO3C002078.2 Cucumis melo HOM05D003846 ORTHO05D004726 8.3e-69 263.8 158 80.4
CsaV3_1G006510 Cucumis sativus L. HOM05D003846 ORTHO05D004726 3.1e-68 261.9 158 79.7
ClCG04G011240 Citrullus lanatus HOM05D003846 ORTHO05D004726 2.7e-67 258.8 158 77.8
CiPaw.15G127700 Carya illinoinensis HOM05D003846 ORTHO05D004726 2.9e-66 255.4 156 78.8
CiPaw.16G084800 Carya illinoinensis HOM05D003846 ORTHO05D004726 2.9e-66 255.4 156 78.2
Haze_18631 Corylus avellana HOM05D003846 ORTHO05D004726 7.2e-65 250.8 156 77.6
Cfa019801 Carpinus fangiana HOM05D003846 ORTHO05D004726 2.7e-64 248.8 156 76.9
PGR044G0282 Punica granatum HOM05D003846 ORTHO05D004726 3.6e-64 248.4 157 74.5
CSS0029565 Camellia sinensis var. sinensis HOM05D003846 ORTHO05D004726 1.0e-63 246.9 157 75.8
DCAR_023191 Daucus carota HOM05D003846 ORTHO05D004726 4.0e-63 245.0 157 75.8
Dinv07363 Davidia involucrata HOM05D003846 ORTHO05D004726 4.0e-63 245.0 157 75.2
Eucgr.K02665 Eucalyptus grandis HOM05D003846 ORTHO05D004726 2.0e-62 242.7 157 75.8
CSS0009272 Camellia sinensis var. sinensis HOM05D003846 ORTHO05D004726 1.7e-61 239.6 157 75.8
Sp5g23760 Schrenkiella parvula HOM05D003846 ORTHO05D004726 2.2e-61 239.2 157 75.8
Solyc03g119700.3 Solanum lycopersicum HOM05D003846 ORTHO05D004726 2.2e-61 239.2 157 75.8
Sopen03g038530 Solanum pennellii HOM05D003846 ORTHO05D004726 2.2e-61 239.2 157 75.8
PGSC0003DMG400005627 Solanum tuberosum HOM05D003846 ORTHO05D004726 2.8e-61 238.8 157 75.8
ATR0665G367 Amborella trichopoda HOM05D003846 ORTHO05D004726 3.7e-61 238.4 157 73.2
Nitab4.5_0010565g0020 Nicotiana tabacum HOM05D003846 ORTHO05D004726 3.7e-61 238.4 157 76.4
QL10p023733 Quercus lobata HOM05D003846 ORTHO05D004726 4.9e-61 238.0 178 68.5
Nitab4.5_0001599g0080 Nicotiana tabacum HOM05D003846 ORTHO05D004726 8.3e-61 237.3 157 75.8
TAR622G0464 Trochodendron aralioides HOM05D003846 ORTHO05D004726 8.3e-61 237.3 157 73.9
Dinv40424 Davidia involucrata HOM05D003846 ORTHO05D004726 1.1e-60 236.9 156 74.4
Glyma.07G089500 Glycine max HOM05D003846 ORTHO05D004726 1.4e-60 236.5 160 76.9
Glyma.09G187300 Glycine max HOM05D003846 ORTHO05D004726 1.4e-60 236.5 160 76.9
Sed0022338 Sechium edule HOM05D003846 ORTHO05D004726 1.8e-60 236.1 158 73.4
Thhalv10019264m.g Eutrema salsugineum HOM05D003846 ORTHO05D004726 2.4e-60 235.7 157 74.5
Phvul.004G160300 Phaseolus vulgaris HOM05D003846 ORTHO05D004726 4.1e-60 235.0 160 75.0
THA.LOC104821956 Tarenaya hassleriana HOM05D003846 ORTHO05D004726 5.4e-60 234.6 159 72.3
GSVIVG01008253001 Vitis vinifera HOM05D003846 ORTHO05D004726 5.4e-60 234.6 157 73.2
AT1G68660 Arabidopsis thaliana HOM05D003846 ORTHO05D004726 7.0e-60 234.2 158 75.3
CARHR061470 Cardamine hirsuta HOM05D003846 ORTHO05D004726 7.0e-60 234.2 159 74.2
VMungo0464G1055 Vigna mungo HOM05D003846 ORTHO05D004726 7.0e-60 234.2 160 74.4
AL2G27580 Arabidopsis lyrata HOM05D003846 ORTHO05D004726 9.1e-60 233.8 158 75.3
CAN.G438.125 Capsicum annuum HOM05D003846 ORTHO05D004726 9.1e-60 233.8 157 73.2
TAR374G1390 Trochodendron aralioides HOM05D003846 ORTHO05D004726 9.1e-60 233.8 157 72.0
Lj2g0006290 Lotus japonicus HOM05D003846 ORTHO05D004726 1.2e-59 233.4 158 74.1
Actinidia35079 Actinidia chinensis HOM05D003846 ORTHO05D004726 2.0e-59 232.6 157 72.0
Aqoxy3G00349 Aquilegia oxysepala HOM05D003846 ORTHO05D004726 2.7e-59 232.3 157 72.0
MSTRG.9269 Avicennia marina HOM05D003846 ORTHO05D004726 3.5e-59 231.9 153 73.9
MD13G1045100 Malus domestica HOM05D003846 ORTHO05D004726 3.5e-59 231.9 157 72.0
Peaxi162Scf00015g00824 Petunia axillaris HOM05D003846 ORTHO05D004726 3.5e-59 231.9 157 74.5
Actinidia31024 Actinidia chinensis HOM05D003846 ORTHO05D004726 4.5e-59 231.5 156 73.7
BcaB03g15438 Brassica carinata HOM05D003846 ORTHO05D004726 5.9e-59 231.1 159 74.2
BraA07t30817Z Brassica rapa HOM05D003846 ORTHO05D004726 5.9e-59 231.1 159 73.6
MD16G1046400 Malus domestica HOM05D003846 ORTHO05D004726 5.9e-59 231.1 157 72.0
Carub.0002s1520 Capsella rubella HOM05D003846 ORTHO05D004726 1.0e-58 230.3 157 73.9
Nn3g17770 Nelumbo nucifera HOM05D003846 ORTHO05D004726 1.0e-58 230.3 157 70.1
PSO063G1115 Papaver somniferum HOM05D003846 ORTHO05D004726 1.0e-58 230.3 156 73.1
MBI19_g21095_MAGBIO Magnolia biondii HOM05D003846 ORTHO05D004726 1.7e-58 229.6 155 70.3
Lalb_Chr14g0371301 Lupinus albus HOM05D003846 ORTHO05D004726 2.9e-58 228.8 157 73.2
Medtr6g085050 Medicago truncatula HOM05D003846 ORTHO05D004726 3.8e-58 228.4 151 79.5
C06p37450 Brassica napus HOM05D003846 ORTHO05D004726 5.0e-58 228.0 160 74.4
BolC6t38848H Brassica oleracea HOM05D003846 ORTHO05D004726 5.0e-58 228.0 160 74.4
TWI79G0122 Tripterygium wilfordii HOM05D003846 ORTHO05D004726 6.6e-58 227.6 157 68.8
Potri.010G128500 Populus trichocarpa HOM05D003846 ORTHO05D004726 8.6e-58 227.3 159 69.8
Atru.chr11.1333 Acer truncatum HOM05D003846 ORTHO05D004726 1.1e-57 226.9 157 72.0
A07p31880 Brassica napus HOM05D003846 ORTHO05D004726 1.1e-57 226.9 159 73.6
Gohir.A13G053526 Gossypium hirsutum HOM05D003846 ORTHO05D004726 1.1e-57 226.9 157 70.7
PSO782G3649 Papaver somniferum HOM05D003846 ORTHO05D004726 1.1e-57 226.9 156 72.4
Prupe.1G306800 Prunus persica HOM05D003846 ORTHO05D004726 1.1e-57 226.9 158 69.6
Lj2g0005403 Lotus japonicus HOM05D003846 ORTHO05D004726 1.5e-57 226.5 159 72.3
EL10Ac6g14463 Beta vulgaris HOM05D003846 ORTHO05D004726 1.9e-57 226.1 157 69.4
BolC2t08590H Brassica oleracea HOM05D003846 ORTHO05D004726 2.5e-57 225.7 160 74.4
Dinv21120 Davidia involucrata HOM05D003846 ORTHO05D004726 3.3e-57 225.3 157 68.8
Gohir.D13G070700 Gossypium hirsutum HOM05D003846 ORTHO05D004726 4.2e-57 224.9 157 70.1
Psat1g039320 Pisum sativum HOM05D003846 ORTHO05D004726 4.2e-57 224.9 151 75.5
TWI31G0653 Tripterygium wilfordii HOM05D003846 ORTHO05D004726 4.2e-57 224.9 157 69.4
BcaB05g24403 Brassica carinata HOM05D003846 ORTHO05D004726 5.5e-57 224.6 159 73.6
Manes.06G071100 Manihot esculenta HOM05D003846 ORTHO05D004726 5.5e-57 224.6 158 70.9
Gorai.013G080600 Gossypium raimondii HOM05D003846 ORTHO05D004726 7.2e-57 224.2 157 70.1
Gorai.013G080900 Gossypium raimondii HOM05D003846 ORTHO05D004726 7.2e-57 224.2 157 70.7
Cpa.g.sc1.209 Carica papaya HOM05D003846 ORTHO05D004726 9.5e-57 223.8 157 70.1
Lalb_Chr17g0341961 Lupinus albus HOM05D003846 ORTHO05D004726 9.5e-57 223.8 158 69.6
A02p15260 Brassica napus HOM05D003846 ORTHO05D004726 1.2e-56 223.4 160 73.8
BraA02t06588Z Brassica rapa HOM05D003846 ORTHO05D004726 1.2e-56 223.4 160 73.8
arahy.Tifrunner.gnm1.ann1.5K2M2S Arachis hypogaea HOM05D003846 ORTHO05D004726 1.6e-56 223.0 159 71.1
arahy.Tifrunner.gnm1.ann1.5U1FHR Arachis hypogaea HOM05D003846 ORTHO05D004726 1.6e-56 223.0 159 71.1
Lalb_Chr10g0099871 Lupinus albus HOM05D003846 ORTHO05D004726 2.8e-56 222.2 159 69.2
Gohir.A13G053470 Gossypium hirsutum HOM05D003846 ORTHO05D004726 4.7e-56 221.5 157 70.1
Gohir.D13G070400 Gossypium hirsutum HOM05D003846 ORTHO05D004726 4.7e-56 221.5 157 68.8
SalBow1G4777 Salvia bowleyana HOM05D003846 ORTHO05D004726 1.0e-55 220.3 137 76.6
CANSAT64G1970 Cannabis sativa HOM05D003846 ORTHO05D004726 2.3e-55 219.2 158 68.4
Ciclev10032968m.g Citrus clementina HOM05D003846 ORTHO05D004726 2.3e-55 219.2 157 70.1
Cc04_g07410 Coffea canephora HOM05D003846 ORTHO05D004726 2.3e-55 219.2 156 69.2
TPR.G9001 Trifolium pratense HOM05D003846 ORTHO05D004726 4.0e-55 218.4 147 76.9
Ah.02g127070 Amaranthus hybridus HOM05D003846 ORTHO05D004726 5.2e-55 218.0 158 68.4
Medtr5g054770 Medicago truncatula HOM05D003846 ORTHO05D004726 6.8e-55 217.6 159 68.6
Phvul.003G028500 Phaseolus vulgaris HOM05D003846 ORTHO05D004726 8.9e-55 217.2 159 69.8
RcHm_v2.0_Chr4g0435651 Rosa chinensis HOM05D003846 ORTHO05D004726 8.9e-55 217.2 158 68.4
unitig_21.g20429 Utricularia gibba HOM05D003846 ORTHO05D004726 8.9e-55 217.2 163 68.1
ClCG05G022950 Citrullus lanatus HOM05D003846 ORTHO05D004726 1.5e-54 216.5 156 66.0
VMungo1215G1161 Vigna mungo HOM05D003846 ORTHO05D004726 1.5e-54 216.5 159 69.8
Oeu024319.1 Olea europaea HOM05D003846 ORTHO05D004726 2.6e-54 215.7 137 76.6
SEGI_01063 Sequoiadendron giganteum HOM05D003846 ORTHO05D004726 2.6e-54 215.7 159 66.7
Sc04g0006620 Simmondsia chinensis HOM05D003846 ORTHO05D004726 2.6e-54 215.7 157 68.2
AUR62002909 Chenopodium quinoa HOM05D003846 ORTHO05D004726 3.4e-54 215.3 158 69.0
Duzib251G0345 Durio zibethinus HOM05D003846 ORTHO05D004726 4.4e-54 214.9 157 66.2
Duzib204G0001 Durio zibethinus HOM05D003846 ORTHO05D004726 5.7e-54 214.5 157 67.5
ECA246G4193 Erigeron canadensis HOM05D003846 ORTHO05D004726 7.5e-54 214.2 157 68.8
Aa31LG6G7320 Aethionema arabicum HOM05D003846 ORTHO05D004726 9.8e-54 213.8 128 81.2
MELO3C012223.2 Cucumis melo HOM05D003846 ORTHO05D004726 9.8e-54 213.8 156 64.7
HanXRQChr06g0171111 Helianthus annuus HOM05D003846 ORTHO05D004726 9.8e-54 213.8 157 69.4
Psat2g088560 Pisum sativum HOM05D003846 ORTHO05D004726 1.3e-53 213.4 145 69.7
unitig_744.g24407 Utricularia gibba HOM05D003846 ORTHO05D004726 1.7e-53 213.0 160 66.2
BcaB03g15443 Brassica carinata HOM05D003846 ORTHO05D004726 2.2e-53 212.6 127 83.5
COL.COLO4_07882 Corchorus olitorius HOM05D000199 ORTHO05D000550 2.9e-53 212.2 128 77.3
Duzib248G0399 Durio zibethinus HOM05D003846 ORTHO05D004726 3.7e-53 211.8 157 66.9
CDE11G1133 Ceratophyllum demersum HOM05D003846 ORTHO05D004726 6.3e-53 211.1 160 65.6
Potri.008G117800 Populus trichocarpa HOM05D003846 ORTHO05D004726 8.3e-53 210.7 121 82.6
Sed0019100 Sechium edule HOM05D003846 ORTHO05D004726 8.3e-53 210.7 155 65.2
arahy.Tifrunner.gnm1.ann1.72UZVS Arachis hypogaea HOM05D003846 ORTHO05D004726 1.4e-52 209.9 158 67.7
Lsat_1_v5_gn_3_40660 Lactuca sativa HOM05D003846 ORTHO05D004726 1.4e-52 209.9 157 69.4
TPR.G38292 Trifolium pratense HOM05D003846 ORTHO05D004726 2.4e-52 209.1 138 73.9
BcaC03g14976 Brassica carinata HOM05D003846 ORTHO05D004726 3.2e-52 208.8 126 82.5
Glyma.02G098100 Glycine max HOM05D003846 ORTHO05D004726 3.2e-52 208.8 158 67.1
Glyma.01G084700 Glycine max HOM05D003846 ORTHO05D004726 5.4e-52 208.0 158 67.1
CSS0028088 Camellia sinensis var. sinensis HOM05D003846 ORTHO05D004726 7.0e-52 207.6 121 80.2
Ah.03g137840 Amaranthus hybridus HOM05D003846 ORTHO05D004726 9.2e-52 207.2 158 67.1
C02p25100 Brassica napus HOM05D003846 ORTHO05D004726 9.2e-52 207.2 126 81.7
Lj9A429T51 Lonicera japonica HOM05D003846 ORTHO05D004726 9.2e-52 207.2 144 71.5
Sabra10G0097700 Salix brachista HOM05D003846 ORTHO05D004726 1.2e-51 206.8 121 81.0
Actinidia39818 Actinidia chinensis HOM05D003846 ORTHO05D004726 2.0e-51 206.1 125 80.0
arahy.Tifrunner.gnm1.ann1.6C9V7B Arachis hypogaea HOM05D003846 ORTHO05D004726 7.8e-51 204.1 158 66.5
vmacro16453 Vaccinium macrocarpon HOM05D003846 ORTHO05D004726 7.8e-51 204.1 211 53.1
Manes.14G098800 Manihot esculenta HOM05D003846 ORTHO05D004726 1.7e-50 203.0 121 79.3
HPP92_016307 Vanilla planifolia HOM05D003846 ORTHO05D004726 1.7e-50 203.0 158 67.1
Thecc.02G359500 Theobroma cacao HOM05D003846 ORTHO05D004726 2.3e-50 202.6 121 78.5
HPP92_016288 Vanilla planifolia HOM05D003846 ORTHO05D004726 2.9e-50 202.2 158 67.1
AagrBONN_evm.TU.Sc2ySwM_369.545 Anthoceros agrestis HOM05D003846 ORTHO05D004726 3.9e-50 201.8 113 85.8
AUR62035268 Chenopodium quinoa HOM05D003846 ORTHO05D004726 1.9e-49 199.5 133 74.4
Sed0009794 Sechium edule HOM05D003846 ORTHO05D004726 2.5e-49 199.1 156 62.2
Rhsim12G0144000 Rhododendron simsii HOM05D003846 ORTHO05D004726 5.6e-49 198.0 136 70.6
Hund25092 Selenicereus undatus HOM05D003846 ORTHO05D004726 5.6e-49 198.0 156 64.1
Migut.D01214 Erythranthe guttata HOM05D003846 ORTHO05D004726 9.5e-49 197.2 116 83.6
BcaC08g45948 Brassica carinata HOM05D003846 ORTHO05D004726 1.2e-48 196.8 142 71.8
SGA_v2.0_scaffold63G21786 Striga asiatica HOM05D003846 ORTHO05D004726 6.2e-48 194.5 131 73.3
Zm00001eb179570 Zea mays HOM05D003846 ORTHO05D004726 6.2e-48 194.5 161 60.9
Os08g0432500 Oryza sativa ssp. japonica HOM05D003846 ORTHO05D004726 2.3e-47 192.6 162 61.7
Zm00001eb041630 Zea mays HOM05D003846 ORTHO05D004726 3.1e-47 192.2 160 61.2
Mapoly0068s0048 Marchantia polymorpha HOM05D003846 ORTHO05D004726 2.0e-46 189.5 119 76.5
Pp3c10_21560 Physcomitrium patens HOM05D003846 ORTHO05D004726 1.7e-45 186.4 107 84.1
Pp3c20_21920 Physcomitrium patens HOM05D003846 ORTHO05D004726 6.4e-45 184.5 113 79.6
SMO356G0199 Selaginella moellendorffii HOM05D003846 ORTHO05D004726 2.4e-44 182.6 112 78.6
Lj6A764T53 Lonicera japonica HOM05D003846 ORTHO05D004726 2.3e-42 176.0 123 68.3
Sed0007398 Sechium edule HOM05D003846 ORTHO05D004726 8.9e-39 164.1 89 85.4
GSVIVG01011936001 Vitis vinifera HOM05D003846 ORTHO05D004726 9.8e-38 160.6 157 56.1
DCAR_011545 Daucus carota HOM05D003846 ORTHO05D004726 4.9e-37 158.3 83 90.4
CBR_g40856 Chara braunii HOM05D003846 ORTHO05D004726 9.2e-36 154.1 123 62.6
PRCOL_00003868 Prasinoderma coloniale HOM05D003846 ORTHO05D004726 2.9e-29 132.5 114 60.5
HPP92_027194 Vanilla planifolia HOM05D003846 ORTHO05D004726 3.7e-29 132.1 78 79.5
Lsat_1_v5_gn_8_50200 Lactuca sativa HOM05D003846 ORTHO05D004726 7.1e-28 127.9 105 66.7
Lsat_1_v5_gn_4_145001 Lactuca sativa HOM05D003846 ORTHO05D004726 3.0e-26 122.5 79 75.9
Lsat_1_v5_gn_4_123441 Lactuca sativa HOM05D003846 ORTHO05D004726 5.6e-25 118.2 81 71.6
Lsat_1_v5_gn_5_125381 Lactuca sativa HOM05D003846 ORTHO05D020826 5.6e-25 118.2 81 71.6
Lsat_1_v5_gn_5_18841 Lactuca sativa HOM05D003846 ORTHO05D020826 5.6e-25 118.2 81 71.6
Lsat_1_v5_gn_5_43841 Lactuca sativa HOM05D003846 ORTHO05D020826 5.6e-25 118.2 81 71.6
Lsat_1_v5_gn_7_114520 Lactuca sativa HOM05D003846 ORTHO05D004726 7.6e-22 107.8 75 72.0
Manes.11G040441 Manihot esculenta HOM05D000085 ORTHO05D249439 7.6e-22 107.8 95 52.6
Cre17.g696400 Chlamydomonas reinhardtii HOM05D003846 ORTHO05D004726 2.9e-21 105.9 116 49.1
Manes.11G039928 Manihot esculenta HOM05D000085 ORTHO05D250131 8.4e-21 104.4 111 49.5
Manes.11G040408 Manihot esculenta HOM05D003846 ORTHO05D004726 3.2e-20 102.4 86 57.0
Lsat_1_v5_gn_4_70420 Lactuca sativa HOM05D003297 ORTHO05D020826 1.6e-19 100.1 70 71.4
TPR.G20310 Trifolium pratense HOM05D003846 ORTHO05D004726 1.3e-18 97.1 54 81.5
CDE05G0888 Ceratophyllum demersum HOM05D003846 ORTHO05D004726 1.1e-17 94.0 139 38.8
Nn4g23759 Nelumbo nucifera HOM05D003846 ORTHO05D004726 1.5e-14 83.6 71 60.6
Lj6A762T41 Lonicera japonica HOM05D003846 ORTHO05D004726 4.4e-14 82.0 54 70.4
Aa31sc562G10 Aethionema arabicum HOM05D003846 ORTHO05D004726 2.9e-13 79.3 48 75.0
C06p41190 Brassica napus HOM05D003846 ORTHO05D004726 5.6e-09 65.1 40 77.5
FAN12G0550 Fragaria x ananassa HOM05D003846 ORTHO05D004726 5.6e-09 65.1 63 61.9
CsaV3_5G034070 Cucumis sativus L. HOM05D000040 ORTHO05D000759 2.1e-08 63.2 70 47.1
MD14G1222900 Malus domestica HOM05D003846 ORTHO05D248887 1.5e-06 57.0 34 76.5


User provided reference genes

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