Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G2091 Fragaria x ananassa HOM05D002504 ORTHO05D007555 2.4e-218 761.9 394 100.0
FvH4_5g15370 Fragaria vesca HOM05D002504 ORTHO05D007555 6.5e-216 753.8 394 99.2
FAN04G1481 Fragaria x ananassa HOM05D002504 ORTHO05D007555 8.8e-213 743.4 394 98.0
FAN13G2799 Fragaria x ananassa HOM05D002504 ORTHO05D007555 1.2e-212 743.0 394 97.7
FAN08G0998 Fragaria x ananassa HOM05D002504 ORTHO05D007555 3.3e-212 741.5 394 97.5
RcHm_v2.0_Chr7g0180701 Rosa chinensis HOM05D002504 ORTHO05D007555 3.2e-199 698.4 394 91.6
Prupe.5G187600 Prunus persica HOM05D002504 ORTHO05D007555 2.4e-170 602.4 394 76.6
MD14G1195800 Malus domestica HOM05D002504 ORTHO05D007555 1.6e-153 546.6 396 71.5
Haze_07368 Corylus avellana HOM05D002504 ORTHO05D007555 1.1e-146 523.9 394 66.8
QL10p015753 Quercus lobata HOM05D002504 ORTHO05D007555 2.5e-143 512.7 393 63.9
Cfa018981 Carpinus fangiana HOM05D002504 ORTHO05D007555 3.7e-142 508.8 394 64.7
QL10p005074 Quercus lobata HOM05D002504 ORTHO05D007555 1.5e-140 503.4 393 62.1
Dinv19925 Davidia involucrata HOM05D002504 ORTHO05D007332 1.1e-138 497.3 393 63.9
Dinv09821 Davidia involucrata HOM05D002504 ORTHO05D007555 1.6e-137 493.4 393 63.9
Duzib068G0930 Durio zibethinus HOM05D002504 ORTHO05D007555 3.9e-136 488.8 391 62.7
Manes.14G075600 Manihot esculenta HOM05D002504 ORTHO05D007555 1.1e-135 487.3 392 62.2
CiPaw.11G039400 Carya illinoinensis HOM05D002504 ORTHO05D007555 1.9e-135 486.5 377 63.4
COL.COLO4_05456 Corchorus olitorius HOM05D002504 ORTHO05D007555 1.9e-135 486.5 391 62.4
Cpa.g.sc17.218 Carica papaya HOM05D002504 ORTHO05D007555 2.4e-133 479.6 390 62.1
Lj4g0008726 Lotus japonicus HOM05D002504 ORTHO05D007555 9.0e-133 477.6 393 60.3
Actinidia34980 Actinidia chinensis HOM05D002504 ORTHO05D007555 1.0e-131 474.2 393 60.3
CSS0049848 Camellia sinensis var. sinensis HOM05D002504 ORTHO05D007555 2.9e-131 472.6 393 60.3
CSS0041593 Camellia sinensis var. sinensis HOM05D002504 ORTHO05D007555 3.8e-131 472.2 393 60.3
TPR.G5442 Trifolium pratense HOM05D002504 ORTHO05D007555 3.8e-131 472.2 393 58.0
Gohir.A11G029531 Gossypium hirsutum HOM05D002504 ORTHO05D007555 3.2e-130 469.2 392 61.7
Gohir.D11G032900 Gossypium hirsutum HOM05D002504 ORTHO05D007555 7.1e-130 468.0 392 61.0
Gorai.007G035700 Gossypium raimondii HOM05D002504 ORTHO05D007555 1.6e-129 466.8 392 61.0
Medtr3g078030 Medicago truncatula HOM05D002504 ORTHO05D007555 3.5e-129 465.7 392 57.1
Thecc.03G080700 Theobroma cacao HOM05D002504 ORTHO05D007555 4.6e-129 465.3 391 61.1
TWI38G0829 Tripterygium wilfordii HOM05D002504 ORTHO05D007555 7.9e-129 464.5 392 58.4
CANSAT78G1429 Cannabis sativa HOM05D002504 ORTHO05D007555 1.3e-128 463.8 392 62.2
Ciclev10020527m.g Citrus clementina HOM05D002504 ORTHO05D007555 1.3e-128 463.8 388 60.6
ClCG01G016490 Citrullus lanatus HOM05D002504 ORTHO05D007555 1.8e-128 463.4 394 58.9
Potri.015G064300 Populus trichocarpa HOM05D002504 ORTHO05D007555 8.7e-128 461.1 392 59.4
Sed0014360 Sechium edule HOM05D002504 ORTHO05D007555 1.1e-127 460.7 395 59.0
Rhsim12G0158700 Rhododendron simsii HOM05D002504 ORTHO05D007555 9.7e-127 457.6 393 58.3
Glyma.17G097600 Glycine max HOM05D002504 ORTHO05D007555 4.8e-126 455.3 393 57.3
arahy.Tifrunner.gnm1.ann1.XHUI7I Arachis hypogaea HOM05D002504 ORTHO05D007555 1.8e-125 453.4 393 55.7
Ca_16191_v3 Cicer arietinum L. HOM05D002504 ORTHO05D007555 4.1e-125 452.2 393 56.0
VMungo1215G2696 Vigna mungo HOM05D002504 ORTHO05D007555 4.1e-125 452.2 392 55.9
arahy.Tifrunner.gnm1.ann1.WQI89G Arachis hypogaea HOM05D002504 ORTHO05D007555 5.3e-125 451.8 393 55.5
Phvul.003G192200 Phaseolus vulgaris HOM05D002504 ORTHO05D007555 5.3e-125 451.8 390 56.4
MELO3C007518.2 Cucumis melo HOM05D002504 ORTHO05D007555 9.0e-125 451.1 394 57.1
TWI39G0444 Tripterygium wilfordii HOM05D002504 ORTHO05D007555 9.0e-125 451.1 392 57.4
arahy.Tifrunner.gnm1.ann1.AAW7H5 Arachis hypogaea HOM05D002504 ORTHO05D007555 2.6e-124 449.5 393 54.7
arahy.Tifrunner.gnm1.ann1.A4B6B0 Arachis hypogaea HOM05D002504 ORTHO05D007555 4.5e-124 448.7 392 55.1
TAR374G0022 Trochodendron aralioides HOM05D002504 ORTHO05D007555 5.9e-124 448.4 393 55.7
Lalb_Chr12g0196751 Lupinus albus HOM05D002504 ORTHO05D007555 1.3e-123 447.2 395 56.2
Sabra15G0090100 Salix brachista HOM05D002504 ORTHO05D007555 2.2e-123 446.4 392 57.7
TPR.G1695 Trifolium pratense HOM05D002504 ORTHO05D007555 3.8e-123 445.7 393 55.7
THA.LOC104808328 Tarenaya hassleriana HOM05D002504 ORTHO05D007555 8.5e-123 444.5 390 55.4
TAR622G0915 Trochodendron aralioides HOM05D002504 ORTHO05D007555 1.4e-122 443.7 393 56.7
Psat5g114360 Pisum sativum HOM05D002504 ORTHO05D007555 9.3e-122 441.0 392 55.4
Atru.BG.192.p Acer truncatum HOM05D002504 ORTHO05D007555 6.1e-121 438.3 349 63.6
CsaV3_6G042770 Cucumis sativus L. HOM05D002504 ORTHO05D007555 1.3e-120 437.2 390 56.2
Cc04_g15430 Coffea canephora HOM05D002504 ORTHO05D007555 2.2e-118 429.9 392 54.1
Oeu022629.1 Olea europaea HOM05D002504 ORTHO05D007555 2.2e-118 429.9 393 54.5
Actinidia19055 Actinidia chinensis HOM05D002504 ORTHO05D007555 8.2e-118 427.9 365 58.9
PGR083G1477 Punica granatum HOM05D002504 ORTHO05D007555 1.3e-115 420.6 392 54.6
Eucgr.A00822 Eucalyptus grandis HOM05D002504 ORTHO05D007555 2.9e-115 419.5 389 54.0
A06p15070 Brassica napus HOM05D002504 ORTHO05D007555 5.0e-115 418.7 390 55.4
Glyma.05G029300 Glycine max HOM05D002504 ORTHO05D007555 6.5e-115 418.3 395 54.2
CARHR019500 Cardamine hirsuta HOM05D002504 ORTHO05D007555 1.4e-114 417.2 390 54.4
BraA06t24622Z Brassica rapa HOM05D002504 ORTHO05D007555 3.2e-114 416.0 390 54.6
C05p17270 Brassica napus HOM05D002504 ORTHO05D007555 7.9e-113 411.4 417 52.5
BolC5t30427H Brassica oleracea HOM05D002504 ORTHO05D007555 7.9e-113 411.4 417 52.5
Thhalv10007868m.g Eutrema salsugineum HOM05D002504 ORTHO05D007555 1.4e-112 410.6 390 55.6
BcaC05g25787 Brassica carinata HOM05D002504 ORTHO05D007555 3.9e-112 409.1 417 52.3
AL1G31390 Arabidopsis lyrata HOM05D002504 ORTHO05D007555 8.8e-112 407.9 394 53.8
AT1G18850 Arabidopsis thaliana HOM05D002504 ORTHO05D007555 2.0e-111 406.8 394 53.6
Nn3g16999 Nelumbo nucifera HOM05D002504 ORTHO05D007555 4.4e-111 405.6 393 53.2
Sp1g16830 Schrenkiella parvula HOM05D002504 ORTHO05D007555 3.7e-110 402.5 418 51.9
Carub.0001s1850 Capsella rubella HOM05D002504 ORTHO05D007555 8.2e-110 401.4 410 51.2
Sc10g0009970 Simmondsia chinensis HOM05D002504 ORTHO05D007555 5.3e-109 398.7 393 52.9
Aa31LG7G3620 Aethionema arabicum HOM05D002504 ORTHO05D007555 2.6e-108 396.4 390 52.1
Nitab4.5_0000269g0140 Nicotiana tabacum HOM05D002504 ORTHO05D007555 2.6e-108 396.4 392 51.0
BcaB07g31903 Brassica carinata HOM05D002504 ORTHO05D007555 3.8e-107 392.5 419 49.6
Nitab4.5_0007394g0010 Nicotiana tabacum HOM05D002504 ORTHO05D007555 6.5e-107 391.7 392 50.5
SalBow5G4081 Salvia bowleyana HOM05D002504 ORTHO05D007555 8.5e-107 391.3 393 51.1
SHI03355 Sapria himalayana HOM05D002504 ORTHO05D007555 7.2e-106 388.3 394 51.0
AUR62038455 Chenopodium quinoa HOM05D002504 ORTHO05D007555 4.7e-105 385.6 400 52.0
Ah.02g112510 Amaranthus hybridus HOM05D002504 ORTHO05D007555 1.4e-104 384.0 397 50.9
EL10As5g23568 Beta vulgaris HOM05D002504 ORTHO05D007555 1.4e-104 384.0 398 51.8
AUR62042153 Chenopodium quinoa HOM05D002504 ORTHO05D007555 6.7e-104 381.7 400 51.8
Sopen06g027310 Solanum pennellii HOM05D002504 ORTHO05D007555 6.7e-104 381.7 392 47.4
Peaxi162Scf00013g00007 Petunia axillaris HOM05D002504 ORTHO05D007555 1.1e-103 380.9 394 50.8
DCAR_001955 Daucus carota HOM05D002504 ORTHO05D007555 2.0e-103 380.2 393 50.6
Solyc06g071010.4 Solanum lycopersicum HOM05D002504 ORTHO05D007555 9.7e-103 377.9 392 47.4
Aqoxy3G03288 Aquilegia oxysepala HOM05D002504 ORTHO05D007555 3.7e-102 375.9 396 48.2
Lsat_1_v5_gn_1_10961 Lactuca sativa HOM05D002504 ORTHO05D007555 3.7e-102 375.9 405 48.6
PGSC0003DMG400033071 Solanum tuberosum HOM05D002504 ORTHO05D007555 8.2e-102 374.8 390 47.7
CAN.G628.37 Capsicum annuum HOM05D002504 ORTHO05D007555 1.1e-101 374.4 394 49.5
MBI03_g18947_MAGBIO Magnolia biondii HOM05D002504 ORTHO05D007555 1.4e-101 374.0 395 49.6
Migut.I00134 Erythranthe guttata HOM05D002504 ORTHO05D007555 2.9e-99 366.3 398 50.0
MSTRG.4344 Avicennia marina HOM05D002504 ORTHO05D007555 1.1e-98 364.4 393 49.6
DCAR_001117 Daucus carota HOM05D002504 ORTHO05D007555 1.6e-97 360.5 389 48.3
PSO832G2768 Papaver somniferum HOM05D002504 ORTHO05D007555 8.8e-96 354.8 393 49.6
PSO591G0510 Papaver somniferum HOM05D002504 ORTHO05D007555 2.8e-94 349.7 393 49.4
Lj7P436T44 Lonicera japonica HOM05D002504 ORTHO05D007555 1.2e-92 344.4 310 56.8
GSVIVG01008049001 Vitis vinifera HOM05D002504 ORTHO05D007555 2.2e-91 340.1 342 52.3
MBI11_g21312_MAGBIO Magnolia biondii HOM05D002504 ORTHO05D007555 2.9e-91 339.7 394 46.4
MBI03_g28522_MAGBIO Magnolia biondii HOM05D002504 ORTHO05D007555 3.8e-91 339.3 394 47.2
unitig_52.g17495 Utricularia gibba HOM05D002504 ORTHO05D007555 3.6e-89 332.8 394 46.4
HanXRQChr06g0178031 Helianthus annuus HOM05D002504 ORTHO05D007555 6.1e-89 332.0 386 46.6
Lj5P114T15 Lonicera japonica HOM05D002504 ORTHO05D007555 3.0e-88 329.7 263 59.3
CDE07G0237 Ceratophyllum demersum HOM05D002504 ORTHO05D007555 5.2e-88 328.9 370 45.7
HPP92_004873 Vanilla planifolia HOM05D002504 ORTHO05D007555 5.2e-88 328.9 383 45.7
PSO063G6525 Papaver somniferum HOM05D002504 ORTHO05D007555 7.7e-84 315.1 397 44.6
SGA_v2.0_scaffold56G20046 Striga asiatica HOM05D002504 ORTHO05D007555 1.4e-80 304.3 334 47.9
Nn5g27262 Nelumbo nucifera HOM05D002504 ORTHO05D007555 4.9e-78 295.8 272 52.6
ECA236G0190 Erigeron canadensis HOM05D002504 ORTHO05D007332 5.2e-72 275.8 305 47.2
ATR1120G016 Amborella trichopoda HOM05D002504 ORTHO05D007555 1.0e-67 261.5 421 40.1
Dinv02434 Davidia involucrata HOM05D002504 ORTHO05D007555 1.1e-66 258.1 179 70.9
Os01g0112100 Oryza sativa ssp. japonica HOM05D002504 ORTHO05D007555 1.3e-43 181.4 272 37.1
Zm00001eb126250 Zea mays HOM05D002504 ORTHO05D007555 3.3e-42 176.8 367 32.4
Zm00001eb334590 Zea mays HOM05D002504 ORTHO05D007555 4.7e-41 172.9 393 30.5
Duzib205G0461 Durio zibethinus HOM05D002504 ORTHO05D007555 1.8e-40 171.0 326 36.5
SEGI_18201 Sequoiadendron giganteum HOM05D002504 ORTHO05D007555 1.0e-35 155.2 342 30.1
Aa31LG9G8990 Aethionema arabicum HOM05D000710 ORTHO05D000336 5.3e-32 142.9 247 37.7
BcaB07g32205 Brassica carinata HOM05D002504 ORTHO05D007555 2.4e-29 134.0 390 29.5
Mapoly0028s0021 Marchantia polymorpha HOM05D002504 ORTHO05D007555 2.5e-26 124.0 351 26.8
Pp3c1_3820 Physcomitrium patens HOM05D002504 ORTHO05D007555 3.3e-26 123.6 371 27.5
Pp3c1_3850 Physcomitrium patens HOM05D002504 ORTHO05D007555 3.3e-26 123.6 371 27.5
Ciclev10033409m.g Citrus clementina HOM05D002504 ORTHO05D007555 2.1e-25 120.9 181 42.5
Sabra12G0030300 Salix brachista HOM05D002504 ORTHO05D007555 4.8e-25 119.8 175 45.7
AagrBONN_evm.TU.Sc2ySwM_369.370 Anthoceros agrestis HOM05D002504 ORTHO05D007555 2.0e-23 114.4 353 26.3
Nn5g27265 Nelumbo nucifera HOM05D002504 ORTHO05D007555 1.7e-22 111.3 431 26.9
arahy.Tifrunner.gnm1.ann1.8LRZ9F Arachis hypogaea HOM05D002504 ORTHO05D007555 1.9e-18 97.8 105 46.7
SMO367G0630 Selaginella moellendorffii HOM05D002504 ORTHO05D007555 4.9e-14 83.2 242 28.5
CBR_g26261 Chara braunii HOM05D002504 ORTHO05D007555 1.1e-10 72.0 262 26.3
AagrBONN_evm.TU.Sc2ySwM_362.2581 Anthoceros agrestis HOM05D002504 ORTHO05D007555 5.9e-07 59.7 186 26.9
COL.COLO4_31086 Corchorus olitorius HOM05D002504 ORTHO05D007555 5.9e-07 59.7 62 50.0


User provided reference genes

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