Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G2055 Fragaria x ananassa HOM05D006388 ORTHO05D008026 6.0e-258 893.6 450 100.0
FvH4_5g18560 Fragaria vesca HOM05D006388 ORTHO05D008026 1.4e-254 882.5 450 98.9
FAN13G2679 Fragaria x ananassa HOM05D006388 ORTHO05D008026 1.1e-246 856.3 450 96.0
FAN08G3112 Fragaria x ananassa HOM05D006388 ORTHO05D008026 1.0e-244 849.7 450 95.6
RcHm_v2.0_Chr7g0176951 Rosa chinensis HOM05D006388 ORTHO05D008026 1.9e-187 659.4 462 77.5
Prupe.5G245000 Prunus persica HOM05D006388 ORTHO05D008026 2.9e-159 565.8 482 66.2
MD14G1246700 Malus domestica HOM05D006388 ORTHO05D008026 1.9e-155 553.1 489 64.6
Cfa017806 Carpinus fangiana HOM05D006388 ORTHO05D008026 6.2e-146 521.5 466 63.7
Psat1g118840 Pisum sativum HOM05D006388 ORTHO05D008026 5.1e-140 501.9 501 55.7
CiPaw.15G107500 Carya illinoinensis HOM05D006388 ORTHO05D008026 4.3e-139 498.8 470 59.6
Potri.004G067200 Populus trichocarpa HOM05D006388 ORTHO05D008026 4.3e-139 498.8 474 59.3
TPR.G31361 Trifolium pratense HOM05D006388 ORTHO05D008026 6.9e-137 491.5 496 56.7
Dinv03508 Davidia involucrata HOM05D006388 ORTHO05D008026 2.6e-136 489.6 471 60.7
Lj2g0005711 Lotus japonicus HOM05D006388 ORTHO05D008026 4.5e-136 488.8 494 56.5
ClCG10G003610 Citrullus lanatus HOM05D006388 ORTHO05D008026 2.2e-135 486.5 456 59.0
Phvul.004G137100 Phaseolus vulgaris HOM05D006388 ORTHO05D008026 4.9e-135 485.3 462 58.2
Lalb_Chr03g0034281 Lupinus albus HOM05D006388 ORTHO05D008026 8.4e-135 484.6 501 54.9
VMungo0464G0944 Vigna mungo HOM05D006388 ORTHO05D008026 8.4e-135 484.6 502 55.2
Haze_18407 Corylus avellana HOM05D006388 ORTHO05D008026 1.4e-134 483.8 463 59.6
TAR622G0711 Trochodendron aralioides HOM05D006388 ORTHO05D008026 1.4e-134 483.8 460 59.1
Medtr6g068920 Medicago truncatula HOM05D006388 ORTHO05D008026 1.9e-134 483.4 502 55.6
Sabra04G0045000 Salix brachista HOM05D006388 ORTHO05D008026 2.5e-134 483.0 502 54.8
MELO3C014032.2 Cucumis melo HOM05D006388 ORTHO05D008026 4.2e-134 482.3 455 57.4
Glyma.16G210900 Glycine max HOM05D006388 ORTHO05D008026 1.2e-133 480.7 499 55.1
CsaV3_3G003610 Cucumis sativus L. HOM05D006388 ORTHO05D008026 4.6e-133 478.8 456 57.9
arahy.Tifrunner.gnm1.ann1.V0741V Arachis hypogaea HOM05D006388 ORTHO05D008026 2.1e-130 469.9 500 55.4
Atru.chr6.990 Acer truncatum HOM05D006388 ORTHO05D008026 1.1e-129 467.6 458 58.3
arahy.Tifrunner.gnm1.ann1.586MWM Arachis hypogaea HOM05D006388 ORTHO05D008026 3.1e-129 466.1 498 55.4
COL.COLO4_30052 Corchorus olitorius HOM05D006388 ORTHO05D008026 4.0e-129 465.7 457 58.6
Sed0000986 Sechium edule HOM05D006388 ORTHO05D008026 1.2e-128 464.2 459 56.4
CANSAT80G2370 Cannabis sativa HOM05D006388 ORTHO05D008026 2.6e-128 463.0 454 57.5
Lj5A168G91 Lonicera japonica HOM05D006388 ORTHO05D008026 1.3e-127 460.7 496 54.6
Gohir.D08G245800 Gossypium hirsutum HOM05D006388 ORTHO05D008026 3.2e-126 456.1 468 57.5
Gohir.A08G225400 Gossypium hirsutum HOM05D006388 ORTHO05D008026 1.8e-124 450.3 468 56.6
Gorai.004G262300 Gossypium raimondii HOM05D006388 ORTHO05D008026 1.5e-123 447.2 468 56.6
Nitab4.5_0001495g0050 Nicotiana tabacum HOM05D006388 ORTHO05D008026 1.9e-123 446.8 463 55.7
Thecc.05G197200 Theobroma cacao HOM05D006388 ORTHO05D008026 2.5e-123 446.4 465 58.3
Ca_25279_v3 Cicer arietinum L. HOM05D006388 ORTHO05D008026 1.3e-122 444.1 478 54.8
Nitab4.5_0007717g0060 Nicotiana tabacum HOM05D006388 ORTHO05D008026 6.3e-122 441.8 458 55.7
Duzib128G0602 Durio zibethinus HOM05D006388 ORTHO05D008026 8.2e-122 441.4 470 55.5
CARHR066430 Cardamine hirsuta HOM05D006388 ORTHO05D008026 1.4e-121 440.7 467 54.0
PSO063G3611 Papaver somniferum HOM05D006388 ORTHO05D008026 1.4e-121 440.7 467 52.5
ClCG00G000350 Citrullus lanatus HOM05D006388 ORTHO05D008026 9.0e-121 438.0 484 52.5
TWI15G1133 Tripterygium wilfordii HOM05D006388 ORTHO05D008026 2.6e-120 436.4 465 55.3
Cpa.g.sc168.3 Carica papaya HOM05D006388 ORTHO05D008026 3.4e-120 436.0 453 55.0
Manes.02G226400 Manihot esculenta HOM05D006388 ORTHO05D008026 4.5e-120 435.6 460 54.6
Carub.0002s2012 Capsella rubella HOM05D006388 ORTHO05D008026 5.9e-120 435.3 453 55.6
AT1G73380 Arabidopsis thaliana HOM05D006388 ORTHO05D008026 7.7e-120 434.9 461 55.3
Eucgr.K02329 Eucalyptus grandis HOM05D006388 ORTHO05D008026 7.7e-120 434.9 466 53.9
PGR044G0861 Punica granatum HOM05D006388 ORTHO05D008026 8.5e-119 431.4 464 53.4
AL2G33160 Arabidopsis lyrata HOM05D006388 ORTHO05D008026 1.1e-118 431.0 455 55.4
Thhalv10018586m.g Eutrema salsugineum HOM05D006388 ORTHO05D008026 2.5e-118 429.9 457 54.3
MBI03_g13439_MAGBIO Magnolia biondii HOM05D006388 ORTHO05D008026 1.2e-117 427.6 463 53.3
Cc00_g12620 Coffea canephora HOM05D006388 ORTHO05D008026 1.6e-117 427.2 472 52.3
Lsat_1_v5_gn_8_64640 Lactuca sativa HOM05D006388 ORTHO05D008026 1.6e-117 427.2 457 55.1
ECA236G2607 Erigeron canadensis HOM05D006388 ORTHO05D008026 2.7e-117 426.4 462 53.7
Nn4g26682 Nelumbo nucifera HOM05D006388 ORTHO05D008026 3.6e-117 426.0 456 53.7
Aa31LG4G3650 Aethionema arabicum HOM05D006388 ORTHO05D008026 4.6e-117 425.6 459 53.4
BraA02t06912Z Brassica rapa HOM05D006388 ORTHO05D008026 3.0e-116 422.9 456 52.6
SalBow5G5586 Salvia bowleyana HOM05D006388 ORTHO05D008026 3.0e-116 422.9 461 52.1
DCAR_014753 Daucus carota HOM05D001996 ORTHO05D002072 3.9e-116 422.5 406 56.9
Sp5g28310 Schrenkiella parvula HOM05D006388 ORTHO05D008026 3.9e-116 422.5 455 53.0
Sc10g0008630 Simmondsia chinensis HOM05D006388 ORTHO05D008026 3.3e-115 419.5 455 52.7
A02p18710 Brassica napus HOM05D006388 ORTHO05D008026 1.3e-114 417.5 455 53.0
C02p31040 Brassica napus HOM05D006388 ORTHO05D008026 1.3e-114 417.5 455 53.0
Sopen03g029690 Solanum pennellii HOM05D006388 ORTHO05D008026 4.8e-114 415.6 467 52.2
Aqoxy3G04328 Aquilegia oxysepala HOM05D006388 ORTHO05D008026 2.4e-113 413.3 460 52.2
HanXRQChr05g0141681 Helianthus annuus HOM05D006388 ORTHO05D008026 9.1e-113 411.4 455 53.0
Oeu063709.3 Olea europaea HOM05D006388 ORTHO05D008026 1.2e-112 411.0 461 52.7
THA.LOC104813931 Tarenaya hassleriana HOM05D006388 ORTHO05D008026 3.4e-112 409.5 460 52.6
PGSC0003DMG400015280 Solanum tuberosum HOM05D006388 ORTHO05D008026 1.3e-111 407.5 460 52.0
SGA_v2.0_scaffold25G10731 Striga asiatica HOM05D006388 ORTHO05D008026 1.7e-111 407.1 466 50.9
EL10Ac8g19473 Beta vulgaris HOM05D006388 ORTHO05D008026 2.9e-111 406.4 466 49.6
BolC2t09150H Brassica oleracea HOM05D006388 ORTHO05D008026 5.0e-111 405.6 454 51.3
CDE04G0152 Ceratophyllum demersum HOM05D006388 ORTHO05D008026 4.7e-109 399.1 467 47.1
Rhsim08G0125300 Rhododendron simsii HOM05D006388 ORTHO05D008026 7.9e-109 398.3 540 46.5
CAN.G861.30 Capsicum annuum HOM05D006388 ORTHO05D008026 1.4e-108 397.5 467 50.1
Ah.14g085810 Amaranthus hybridus HOM05D006388 ORTHO05D008026 5.1e-108 395.6 457 47.3
TPR.G3132 Trifolium pratense HOM05D006388 ORTHO05D008026 2.2e-106 390.2 427 53.4
ATR0124G024 Amborella trichopoda HOM05D006388 ORTHO05D008026 5.9e-104 382.1 484 45.7
AUR62040788 Chenopodium quinoa HOM05D006388 ORTHO05D008026 7.2e-102 375.2 408 50.5
FAN04G1542 Fragaria x ananassa HOM05D006388 ORTHO05D008026 4.7e-101 372.5 205 93.2
QL10p033727 Quercus lobata HOM05D006388 ORTHO05D008026 8.2e-98 361.7 396 55.1
GSVIVG01024248001 Vitis vinifera HOM05D006388 ORTHO05D008026 8.2e-98 361.7 447 50.6
HPP92_007318 Vanilla planifolia HOM05D006388 ORTHO05D008026 4.5e-96 355.9 452 47.1
Ciclev10020647m.g Citrus clementina HOM05D006388 ORTHO05D008026 1.5e-91 340.9 385 52.2
Solyc03g019930.4 Solanum lycopersicum HOM05D006388 ORTHO05D008026 2.6e-91 340.1 448 46.7
Migut.O00278 Erythranthe guttata HOM05D006388 ORTHO05D008026 2.2e-87 327.0 448 45.1
Hund22363 Selenicereus undatus HOM05D006388 ORTHO05D008026 3.0e-84 316.6 401 47.4
Zm00001eb068340 Zea mays HOM05D006388 ORTHO05D008026 1.2e-80 304.7 452 43.1
Actinidia34678 Actinidia chinensis HOM05D006388 ORTHO05D008026 7.2e-78 295.4 338 51.5
vmacro17751 Vaccinium macrocarpon HOM05D006388 ORTHO05D008026 9.5e-78 295.0 379 48.8
ClCG00G006010 Citrullus lanatus HOM05D006388 ORTHO05D008026 4.7e-77 292.7 331 51.7
unitig_749.g14324 Utricularia gibba HOM05D006388 ORTHO05D008026 2.4e-73 280.4 453 42.6
SEGI_28863 Sequoiadendron giganteum HOM05D006388 ORTHO05D008026 1.2e-72 278.1 465 38.1
Glyma.09G161700 Glycine max HOM05D006388 ORTHO05D008026 5.2e-68 262.7 195 69.2
Peaxi162Scf00171g00011 Petunia axillaris HOM05D006388 ORTHO05D008026 1.7e-66 257.7 189 69.3
Os10g0489800 Oryza sativa ssp. japonica HOM05D006388 ORTHO05D008026 3.2e-65 253.4 316 49.1
TPR.G27930 Trifolium pratense HOM05D006388 ORTHO05D008026 6.0e-64 249.2 253 55.7
Duzib128G0966 Durio zibethinus HOM05D006388 ORTHO05D008026 6.6e-63 245.7 173 73.4
AagrBONN_evm.TU.Sc2ySwM_344.3994 Anthoceros agrestis HOM05D006388 ORTHO05D008026 1.2e-56 224.9 543 31.7
Gohir.A08G079000 Gossypium hirsutum HOM05D006388 ORTHO05D008026 8.6e-55 218.8 284 48.6
Mapoly0114s0003 Marchantia polymorpha HOM05D006388 ORTHO05D008026 1.6e-53 214.5 510 32.4
Pp3c1_7520 Physcomitrium patens HOM05D006388 ORTHO05D008026 2.0e-51 207.6 502 31.7
SMO169G0166 Selaginella moellendorffii HOM05D006388 ORTHO05D008026 3.2e-49 200.3 468 32.5
Duzib128G1156 Durio zibethinus HOM05D006388 ORTHO05D008026 4.1e-49 199.9 247 50.6
CSS0002556 Camellia sinensis var. sinensis HOM05D006388 ORTHO05D008026 1.9e-46 191.0 124 78.2
ClCG00G000360 Citrullus lanatus HOM05D006388 ORTHO05D008026 1.1e-44 185.3 124 75.8
AUR62038569 Chenopodium quinoa HOM05D006388 ORTHO05D008026 4.0e-44 183.3 265 40.8
CBR_g36351 Chara braunii HOM05D006388 ORTHO05D008026 1.4e-33 148.3 171 43.9
TPR.G16379 Trifolium pratense HOM05D006388 ORTHO05D008026 6.2e-29 132.9 90 72.2
Glyma.09G161751 Glycine max HOM05D006388 ORTHO05D008026 1.2e-24 118.6 111 53.2
vmacro17752 Vaccinium macrocarpon HOM05D006388 ORTHO05D008026 1.2e-24 118.6 70 82.9
TPR.G31360 Trifolium pratense HOM05D006388 ORTHO05D008026 5.1e-23 113.2 70 80.0
TPR.G46 Trifolium pratense HOM05D006388 ORTHO05D008026 3.0e-15 87.4 132 43.2
Actinidia34679 Actinidia chinensis HOM05D006388 ORTHO05D008026 2.5e-14 84.3 48 85.4
PGR044G2638 Punica granatum HOM05D006388 ORTHO05D008026 1.4e-12 78.6 92 51.1
Hma1.2p1_0800F.1_g220210 Hydrangea macrophylla HOM05D006388 ORTHO05D008026 2.0e-11 74.7 54 72.2
Cre02.g083400 Chlamydomonas reinhardtii HOM05D006388 ORTHO05D008026 1.1e-09 68.9 171 32.2
MapolyY_B0043 Marchantia polymorpha HOM05D006388 ORTHO05D008026 9.3e-09 65.9 155 32.9
Zm00001eb050690 Zea mays HOM05D006388 ORTHO05D008026 1.2e-08 65.5 48 62.5
Zm00001eb135490 Zea mays HOM05D006388 ORTHO05D008026 6.1e-08 63.2 205 26.3


User provided reference genes

Program Settings