Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G1908 Fragaria x ananassa HOM05D004519 ORTHO05D006283 2.1e-302 1041.6 534 100.0
FAN18G3814 Fragaria x ananassa HOM05D004519 ORTHO05D006283 2.7e-273 944.9 523 94.8
FvH4_5g23060 Fragaria vesca HOM05D004519 ORTHO05D006283 1.9e-247 859.0 479 94.8
FAN04G1490 Fragaria x ananassa HOM05D004519 ORTHO05D006283 2.2e-243 845.5 471 93.0
RcHm_v2.0_Chr7g0211781 Rosa chinensis HOM05D004519 ORTHO05D006283 7.4e-231 803.9 476 89.3
FAN13G3061 Fragaria x ananassa HOM05D004519 ORTHO05D006283 1.1e-229 800.0 479 89.1
MD06G1026700 Malus domestica HOM05D004519 ORTHO05D006283 1.8e-197 693.0 477 75.3
MD16G1279400 Malus domestica HOM05D004519 ORTHO05D006283 5.0e-195 684.9 478 76.2
FAN08G3243 Fragaria x ananassa HOM05D004519 ORTHO05D006283 8.9e-192 674.1 427 84.8
Ciclev10001047m.g Citrus clementina HOM05D004519 ORTHO05D006283 3.4e-183 645.6 483 67.1
Prupe.5G027200 Prunus persica HOM05D004519 ORTHO05D006283 6.4e-182 641.3 482 73.0
Dinv29004 Davidia involucrata HOM05D004519 ORTHO05D006283 1.3e-179 633.6 470 67.2
GSVIVG01013060001 Vitis vinifera HOM05D004519 ORTHO05D006283 1.7e-179 633.3 466 70.2
Cfa012505 Carpinus fangiana HOM05D004519 ORTHO05D006283 3.3e-178 629.0 475 69.9
CiPaw.11G098500 Carya illinoinensis HOM05D004519 ORTHO05D006283 1.1e-173 614.0 475 66.5
Hma1.2p1_1569F.1_g291200 Hydrangea macrophylla HOM05D004519 ORTHO05D006283 5.4e-173 611.7 474 66.5
Dinv25262 Davidia involucrata HOM05D004519 ORTHO05D006283 1.2e-172 610.5 408 72.1
CiPaw.12G068400 Carya illinoinensis HOM05D004519 ORTHO05D006283 2.3e-171 606.3 409 72.9
Potri.001G136600 Populus trichocarpa HOM05D004519 ORTHO05D006283 1.1e-170 604.0 431 69.4
Nn3g19385 Nelumbo nucifera HOM05D004519 ORTHO05D006283 2.5e-170 602.8 428 68.5
PGR042G1943 Punica granatum HOM05D004519 ORTHO05D006283 3.6e-169 599.0 434 67.1
CSS0024637 Camellia sinensis var. sinensis HOM05D004519 ORTHO05D006283 8.1e-169 597.8 475 64.2
CANSAT01G0127 Cannabis sativa HOM05D004519 ORTHO05D006283 1.4e-168 597.0 381 76.6
Aqoxy3G02176 Aquilegia oxysepala HOM05D004519 ORTHO05D006283 9.0e-168 594.3 475 64.4
Manes.17G018849 Manihot esculenta HOM05D004519 ORTHO05D006283 1.3e-166 590.5 462 64.1
TAR629G2035 Trochodendron aralioides HOM05D004519 ORTHO05D006283 1.7e-166 590.1 462 64.9
CsaV3_3G048840 Cucumis sativus L. HOM05D004519 ORTHO05D006283 2.9e-166 589.3 421 68.2
Gorai.004G182200 Gossypium raimondii HOM05D004519 ORTHO05D006283 1.1e-165 587.4 436 66.3
Sc01g0007150 Simmondsia chinensis HOM05D004519 ORTHO05D006283 1.1e-165 587.4 434 67.1
Oeu027094.2 Olea europaea HOM05D004519 ORTHO05D006283 9.3e-165 584.3 430 68.1
PSO063G4347 Papaver somniferum HOM05D004519 ORTHO05D006283 1.6e-164 583.6 419 67.1
MELO3C003440.2 Cucumis melo HOM05D004519 ORTHO05D006283 2.7e-164 582.8 409 68.9
Duzib205G0301 Durio zibethinus HOM05D004519 ORTHO05D006283 6.0e-164 581.6 457 64.1
Nn1g00218 Nelumbo nucifera HOM05D004519 ORTHO05D006283 1.3e-163 580.5 436 66.3
PSO782G3212 Papaver somniferum HOM05D004519 ORTHO05D006283 1.3e-163 580.5 419 66.8
Gorai.007G033500 Gossypium raimondii HOM05D004519 ORTHO05D006283 1.7e-163 580.1 467 64.0
Eucgr.E00228 Eucalyptus grandis HOM05D004519 ORTHO05D006283 2.3e-163 579.7 415 67.5
ClCG09G011630 Citrullus lanatus HOM05D004519 ORTHO05D006283 1.1e-162 577.4 504 59.9
Sed0022223 Sechium edule HOM05D004519 ORTHO05D006283 1.5e-162 577.0 472 62.9
Gohir.A11G028600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 1.9e-162 576.6 408 69.9
Gohir.D11G030600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 1.6e-161 573.5 408 68.9
Aa31LG2G13810 Aethionema arabicum HOM05D004519 ORTHO05D006283 2.1e-161 573.2 422 66.6
Carub.0001s3053 Capsella rubella HOM05D004519 ORTHO05D006283 2.8e-161 572.8 469 60.6
Thhalv10007540m.g Eutrema salsugineum HOM05D004519 ORTHO05D006283 3.6e-161 572.4 442 63.1
Lj4g0001331 Lotus japonicus HOM05D004519 ORTHO05D006283 4.8e-161 572.0 398 70.4
CAN.G726.25 Capsicum annuum HOM05D004519 ORTHO05D006283 6.2e-161 571.6 481 61.1
Glyma.01G014200 Glycine max HOM05D004519 ORTHO05D006283 1.4e-160 570.5 380 72.1
AT1G32200 Arabidopsis thaliana HOM05D004519 ORTHO05D006283 4.0e-160 568.9 414 66.2
HanXRQChr03g0083251 Helianthus annuus HOM05D004519 ORTHO05D006283 5.3e-160 568.5 428 65.9
AL1G46330 Arabidopsis lyrata HOM05D004519 ORTHO05D006283 9.0e-160 567.8 414 66.2
Psat2g139000 Pisum sativum HOM05D004519 ORTHO05D006283 1.2e-159 567.4 433 65.8
THA.LOC104812759 Tarenaya hassleriana HOM05D004519 ORTHO05D006283 1.2e-159 567.4 418 67.0
THA.LOC104814413 Tarenaya hassleriana HOM05D004519 ORTHO05D006283 1.2e-159 567.4 422 66.4
Lalb_Chr09g0325481 Lupinus albus HOM05D004519 ORTHO05D006283 2.6e-159 566.2 430 66.0
Glyma.09G207900 Glycine max HOM05D004519 ORTHO05D006283 3.4e-159 565.8 380 71.6
Lalb_Chr16g0381061 Lupinus albus HOM05D004519 ORTHO05D006283 7.6e-159 564.7 383 71.0
MBI04_g32203_MAGBIO Magnolia biondii HOM05D004519 ORTHO05D006283 7.6e-159 564.7 463 61.8
BcaC05g27905 Brassica carinata HOM05D004519 ORTHO05D006283 9.9e-159 564.3 450 62.7
Nitab4.5_0000529g0120 Nicotiana tabacum HOM05D004519 ORTHO05D006283 9.9e-159 564.3 472 60.6
Sabra01G0105700 Salix brachista HOM05D004519 ORTHO05D006283 1.3e-158 563.9 514 58.6
A05p25130 Brassica napus HOM05D004519 ORTHO05D006283 4.9e-158 562.0 439 63.1
BraA05t21393Z Brassica rapa HOM05D004519 ORTHO05D006283 4.9e-158 562.0 439 63.1
Sp1g27880 Schrenkiella parvula HOM05D004519 ORTHO05D006283 6.4e-158 561.6 421 64.4
VMungo1215G0394 Vigna mungo HOM05D004519 ORTHO05D006283 1.1e-157 560.8 380 70.3
BcaB03g13753 Brassica carinata HOM05D004519 ORTHO05D006283 1.4e-157 560.5 469 60.3
CARHR031570 Cardamine hirsuta HOM05D004519 ORTHO05D006283 3.2e-157 559.3 478 60.3
BcaB07g32892 Brassica carinata HOM05D004519 ORTHO05D006283 5.4e-157 558.5 434 62.4
Gohir.A03G000032 Gossypium hirsutum HOM05D004519 ORTHO05D006283 5.4e-157 558.5 436 64.0
TPR.G19434 Trifolium pratense HOM05D004519 ORTHO05D006283 7.1e-157 558.1 475 61.3
Solyc08g076470.4 Solanum lycopersicum HOM05D004519 ORTHO05D006283 9.3e-157 557.8 419 64.0
Gorai.003G185500 Gossypium raimondii HOM05D004519 ORTHO05D006283 2.7e-156 556.2 436 63.8
MSTRG.24848 Avicennia marina HOM05D004519 ORTHO05D006283 3.5e-156 555.8 389 68.9
Phvul.002G136600 Phaseolus vulgaris HOM05D004519 ORTHO05D006283 3.5e-156 555.8 380 69.5
Sopen08g025050 Solanum pennellii HOM05D004519 ORTHO05D006283 3.5e-156 555.8 419 64.0
C05p31600 Brassica napus HOM05D004519 ORTHO05D006283 4.6e-156 555.4 409 64.5
BolC5t31883H Brassica oleracea HOM05D004519 ORTHO05D006283 4.6e-156 555.4 409 64.5
Migut.E00743 Erythranthe guttata HOM05D004519 ORTHO05D006283 1.3e-155 553.9 432 63.0
Medtr5g029230 Medicago truncatula HOM05D004519 ORTHO05D006283 1.3e-155 553.9 402 67.9
BcaC05g27251 Brassica carinata HOM05D004519 ORTHO05D006283 2.3e-155 553.1 409 64.3
Cc08_g03490 Coffea canephora HOM05D004519 ORTHO05D006283 2.3e-155 553.1 385 70.1
HanXRQChr13g0414231 Helianthus annuus HOM05D004519 ORTHO05D006283 2.3e-155 553.1 419 65.2
A09p34000 Brassica napus HOM05D004519 ORTHO05D006283 5.1e-155 552.0 415 63.9
SGA_v2.0_scaffold198G41070 Striga asiatica HOM05D004519 ORTHO05D006283 5.1e-155 552.0 493 57.8
BcaC07g37628 Brassica carinata HOM05D004519 ORTHO05D006283 2.5e-154 549.7 432 62.0
BolC8t47999H Brassica oleracea HOM05D004519 ORTHO05D006283 3.3e-154 549.3 432 62.0
BcaB04g17996 Brassica carinata HOM05D004519 ORTHO05D006283 5.6e-154 548.5 413 63.7
Ca_25177_v3 Cicer arietinum L. HOM05D004519 ORTHO05D006283 7.4e-154 548.1 372 70.4
QL12p001672 Quercus lobata HOM05D004519 ORTHO05D006283 9.6e-154 547.7 546 53.3
CSS0001538 Camellia sinensis var. sinensis HOM05D004519 ORTHO05D006283 4.8e-153 545.4 347 73.8
A08p09320 Brassica napus HOM05D004519 ORTHO05D006283 2.4e-152 543.1 432 61.3
BraA08t32930Z Brassica rapa HOM05D004519 ORTHO05D006283 2.4e-152 543.1 432 61.3
Lsat_1_v5_gn_6_80100 Lactuca sativa HOM05D004519 ORTHO05D006283 2.4e-152 543.1 445 61.6
ECA240G3299 Erigeron canadensis HOM05D004519 ORTHO05D006283 7.6e-151 538.1 461 60.7
ATR0829G164 Amborella trichopoda HOM05D004519 ORTHO05D006283 3.5e-148 529.3 433 60.7
Os10g0577900 Oryza sativa ssp. japonica HOM05D004519 ORTHO05D006283 1.8e-147 526.9 376 65.7
vmacro00276 Vaccinium macrocarpon HOM05D004519 ORTHO05D006283 3.9e-147 525.8 336 73.2
Thecc.03G310400 Theobroma cacao HOM05D004519 ORTHO05D006283 8.7e-147 524.6 436 61.9
Zm00001eb025080 Zea mays HOM05D004519 ORTHO05D006283 1.9e-146 523.5 376 65.2
Zm00001eb224960 Zea mays HOM05D004519 ORTHO05D006283 4.3e-146 522.3 375 64.8
Lj2A231G41 Lonicera japonica HOM05D004519 ORTHO05D006283 9.6e-146 521.2 501 57.9
CDE12G0245 Ceratophyllum demersum HOM05D004519 ORTHO05D006283 2.8e-145 519.6 399 64.7
C05p39140 Brassica napus HOM05D004519 ORTHO05D006283 9.0e-144 514.6 412 62.1
Rhsim11G0021900 Rhododendron simsii HOM05D004519 ORTHO05D006283 1.5e-143 513.8 569 50.1
Duzib068G1409 Durio zibethinus HOM05D004519 ORTHO05D006283 2.0e-143 513.5 436 61.9
SEGI_02196 Sequoiadendron giganteum HOM05D004519 ORTHO05D006283 7.6e-143 511.5 450 58.2
Gohir.D03G176300 Gossypium hirsutum HOM05D004519 ORTHO05D006283 2.9e-142 509.6 347 69.5
DCAR_008221 Daucus carota HOM05D004519 ORTHO05D006283 1.9e-141 506.9 387 65.1
BraA09t38946Z Brassica rapa HOM05D004519 ORTHO05D006283 1.6e-140 503.8 415 60.7
arahy.Tifrunner.gnm1.ann1.BI8WMI Arachis hypogaea HOM05D004519 ORTHO05D006283 3.5e-140 502.7 399 63.4
arahy.Tifrunner.gnm1.ann1.D9NVDI Arachis hypogaea HOM05D004519 ORTHO05D006283 3.5e-140 502.7 399 63.4
AUR62018641 Chenopodium quinoa HOM05D004519 ORTHO05D006283 4.6e-140 502.3 369 65.9
AUR62007353 Chenopodium quinoa HOM05D004519 ORTHO05D006283 2.3e-139 500.0 443 57.3
Haze_08164 Corylus avellana HOM05D004519 ORTHO05D006283 5.3e-136 488.8 483 57.8
Gohir.D08G174500 Gossypium hirsutum HOM05D004519 ORTHO05D006283 2.2e-134 483.4 370 63.8
Mapoly0045s0098 Marchantia polymorpha HOM05D004519 ORTHO05D006283 2.5e-133 479.9 397 57.9
Gohir.A08G153600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 3.2e-133 479.6 370 63.5
CDE04G2515 Ceratophyllum demersum HOM05D004519 ORTHO05D006283 1.2e-132 477.6 452 55.8
unitig_32.g10899 Utricularia gibba HOM05D004519 ORTHO05D006283 2.2e-129 466.8 389 58.9
Peaxi162Scf00170g00818 Petunia axillaris HOM05D004519 ORTHO05D006283 2.4e-128 463.4 428 56.1
Nitab4.5_0012493g0010 Nicotiana tabacum HOM05D004519 ORTHO05D006283 4.2e-125 452.6 307 68.1
EL10Ac5g12013 Beta vulgaris HOM05D004519 ORTHO05D006283 7.2e-125 451.8 428 53.7
HanXRQChr06g0172791 Helianthus annuus HOM05D004519 ORTHO05D006283 3.7e-121 439.5 377 58.6
HPP92_020895 Vanilla planifolia HOM05D004519 ORTHO05D006283 1.8e-120 437.2 309 68.0
Pp3c7_2970 Physcomitrium patens HOM05D004519 ORTHO05D006283 1.5e-119 434.1 381 52.5
SMO244G0022 Selaginella moellendorffii HOM05D004519 ORTHO05D006283 7.7e-119 431.8 372 55.6
AagrBONN_evm.TU.Sc2ySwM_117.1032 Anthoceros agrestis HOM05D004547 ORTHO05D005133 5.0e-118 429.1 384 56.2
Actinidia01317 Actinidia chinensis HOM05D004519 ORTHO05D006283 1.6e-116 424.1 349 63.0
EL10Ac5g12011 Beta vulgaris HOM05D004519 ORTHO05D006283 9.7e-114 414.8 398 53.5
DCAR_004271 Daucus carota HOM05D004519 ORTHO05D006283 1.7e-110 404.1 246 77.2
Haze_08160 Corylus avellana HOM05D004519 ORTHO05D006283 6.3e-105 385.6 253 74.3
Eucgr.E01634 Eucalyptus grandis HOM05D004519 ORTHO05D006283 1.1e-104 384.8 248 71.4
CBR_g4494 Chara braunii HOM05D004519 ORTHO05D006283 1.8e-104 384.0 394 48.7
Cpa.g.sc208.3 Carica papaya HOM05D004519 ORTHO05D006283 3.1e-104 383.3 217 79.7
Atru.chr6.1525 Acer truncatum HOM05D004519 ORTHO05D006283 1.5e-93 347.8 222 74.3
Cre02.g143000 Chlamydomonas reinhardtii HOM05D004519 ORTHO05D006283 6.2e-76 289.3 364 40.7
Actinidia29340 Actinidia chinensis HOM05D004519 ORTHO05D006283 7.5e-74 282.3 302 51.7
PRCOL_00006772 Prasinoderma coloniale HOM05D004519 ORTHO05D006283 2.7e-63 247.3 290 43.1
MCO03G317 Micromonas commoda HOM05D004519 ORTHO05D006283 7.3e-61 239.2 346 40.8
Hma1.2p1_3246F.1_g334370 Hydrangea macrophylla HOM05D004519 ORTHO05D006283 2.4e-48 197.6 176 57.4
MBI15_g25773_MAGBIO Magnolia biondii HOM05D004519 ORTHO05D006283 2.1e-39 167.9 98 75.5
Cpa.g.sc208.5 Carica papaya HOM05D004519 ORTHO05D006283 3.7e-36 157.1 166 53.0
Eucgr.A01818 Eucalyptus grandis HOM05D004519 ORTHO05D006283 1.7e-33 148.3 106 66.0
HanXRQChr16g0500211 Helianthus annuus HOM05D004519 ORTHO05D006283 2.0e-26 124.8 77 74.0
arahy.Tifrunner.gnm1.ann1.LG4SFI Arachis hypogaea HOM05D000755 ORTHO05D017477 9.7e-21 105.9 108 52.8
Haze_20066 Corylus avellana HOM05D004519 ORTHO05D007437 9.0e-19 99.4 95 53.7
Actinidia01316 Actinidia chinensis HOM05D004519 ORTHO05D006283 4.5e-18 97.1 62 72.6
RcHm_v2.0_Chr5g0062811 Rosa chinensis HOM05D004519 ORTHO05D017048 1.7e-17 95.1 54 85.2
Gohir.D08G117301 Gossypium hirsutum HOM05D004519 ORTHO05D017048 3.8e-17 94.0 55 72.7
Gohir.D11G228750 Gossypium hirsutum HOM05D004519 ORTHO05D017048 3.8e-17 94.0 55 72.7
Gohir.D11G251850 Gossypium hirsutum HOM05D004519 ORTHO05D017048 3.8e-17 94.0 55 72.7
Gohir.D13G135501 Gossypium hirsutum HOM05D004519 ORTHO05D017048 1.1e-16 92.4 55 70.9
PGSC0003DMG401014796 Solanum tuberosum HOM05D004519 ORTHO05D006283 3.2e-16 90.9 93 46.2
Gorai.008G116000 Gossypium raimondii HOM05D004519 ORTHO05D017048 4.2e-16 90.5 54 70.4
COL.COLO4_16939 Corchorus olitorius HOM05D004519 ORTHO05D006283 3.1e-11 74.3 73 57.5
Actinidia29341 Actinidia chinensis HOM05D004519 ORTHO05D052920 3.2e-08 64.3 32 81.2
arahy.Tifrunner.gnm1.ann1.18EICQ Arachis hypogaea HOM05D000755 ORTHO05D017477 3.2e-08 64.3 53 64.2
Gohir.D02G161780 Gossypium hirsutum HOM05D004519 ORTHO05D017048 2.3e-06 58.2 35 68.6
Gohir.D10G176966 Gossypium hirsutum HOM05D004519 ORTHO05D017048 2.3e-06 58.2 35 68.6


User provided reference genes

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