Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G1888 Fragaria x ananassa HOM05D004908 ORTHO05D006418 4.0e-276 954.1 483 100.0
FAN08G0411 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.8e-154 550.1 418 73.0
FAN13G3071 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.9e-153 546.6 327 86.2
RcHm_v2.0_Chr7g0183321 Rosa chinensis HOM05D004908 ORTHO05D006418 3.0e-114 416.4 339 65.8
FvH4_5g13640 Fragaria vesca HOM05D004908 ORTHO05D006418 9.4e-108 394.8 347 61.7
FAN13G1921 Fragaria x ananassa HOM05D004908 ORTHO05D006418 2.0e-97 360.5 341 58.7
FAN08G1663 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.3e-93 347.8 343 57.4
Prupe.5G207300 Prunus persica HOM05D004908 ORTHO05D006418 6.6e-93 345.5 346 56.9
MD14G1214000 Malus domestica HOM05D004908 ORTHO05D006418 1.3e-88 331.3 349 55.9
FvH4_5g13620 Fragaria vesca HOM05D004908 ORTHO05D006418 6.6e-85 318.9 177 92.1
Cfa019355 Carpinus fangiana HOM05D004908 ORTHO05D006418 1.4e-79 301.2 339 51.6
Prupe.5G207200 Prunus persica HOM05D004908 ORTHO05D006418 5.4e-79 299.3 347 50.4
Haze_07746 Corylus avellana HOM05D004908 ORTHO05D006418 1.6e-78 297.7 368 47.3
QL10p019966 Quercus lobata HOM05D004908 ORTHO05D006418 5.0e-77 292.7 353 51.3
CiPaw.12G009100 Carya illinoinensis HOM05D004908 ORTHO05D006418 2.5e-76 290.4 343 48.7
Gorai.008G298500 Gossypium raimondii HOM05D004908 ORTHO05D006418 5.4e-71 272.7 338 49.4
GSVIVG01008119001 Vitis vinifera HOM05D004908 ORTHO05D006418 5.4e-71 272.7 342 49.4
Thecc.03G001900 Theobroma cacao HOM05D004908 ORTHO05D006418 2.1e-70 270.8 349 47.3
Gohir.A12G276800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 4.6e-70 269.6 338 49.1
Dinv17436 Davidia involucrata HOM05D004908 ORTHO05D006418 4.3e-68 263.1 345 48.1
Sed0013495 Sechium edule HOM05D004908 ORTHO05D006418 1.2e-67 261.5 310 49.0
Duzib068G0428 Durio zibethinus HOM05D004908 ORTHO05D006418 1.1e-66 258.5 344 46.8
CANSAT80G1354 Cannabis sativa HOM05D004908 ORTHO05D006418 1.8e-66 257.7 345 45.2
CsaV3_1G006120 Cucumis sativus L. HOM05D004908 ORTHO05D006418 3.1e-66 256.9 308 47.7
Cpa.g.sc94.75 Carica papaya HOM05D004908 ORTHO05D006418 5.2e-66 256.1 345 45.8
Hma1.2p1_0060F.1_g032940 Hydrangea macrophylla HOM05D004908 ORTHO05D006418 6.8e-66 255.8 349 46.4
Glyma.05G019500 Glycine max HOM05D004908 ORTHO05D006418 8.9e-66 255.4 317 47.6
TWI81G0201 Tripterygium wilfordii HOM05D004908 ORTHO05D006418 1.5e-65 254.6 343 47.8
Potri.006G227300 Populus trichocarpa HOM05D004908 ORTHO05D006418 3.4e-65 253.4 340 47.9
ClCG04G011680 Citrullus lanatus HOM05D004908 ORTHO05D006418 2.9e-64 250.4 304 47.4
Prupe.3G124800 Prunus persica HOM05D004908 ORTHO05D006418 3.7e-64 250.0 348 46.3
Manes.14G087300 Manihot esculenta HOM05D004908 ORTHO05D006418 4.9e-64 249.6 348 45.4
Gohir.D12G277800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 8.3e-64 248.8 333 47.1
Thhalv10008142m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 5.4e-63 246.1 320 45.6
AT1G18600 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 2.7e-62 243.8 346 43.6
A06p14680 Brassica napus HOM05D004908 ORTHO05D006418 4.6e-62 243.0 349 44.7
BraA06t24593Z Brassica rapa HOM05D004908 ORTHO05D006418 4.6e-62 243.0 349 44.7
Cc00_g03370 Coffea canephora HOM05D004908 ORTHO05D006418 4.6e-62 243.0 343 45.2
AL1G31040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 7.8e-62 242.3 337 43.6
CARHR019220 Cardamine hirsuta HOM05D004908 ORTHO05D006418 1.0e-61 241.9 309 46.3
CSS0022679 Camellia sinensis var. sinensis HOM05D004908 ORTHO05D006418 1.3e-61 241.5 346 45.7
Carub.0001s1823 Capsella rubella HOM05D004908 ORTHO05D006418 1.3e-61 241.5 350 42.9
Atru.chr9.517 Acer truncatum HOM05D004908 ORTHO05D006418 1.7e-61 241.1 343 47.5
BcaB07g31879 Brassica carinata HOM05D004908 ORTHO05D006418 2.3e-61 240.7 349 43.6
Lalb_Chr07g0178341 Lupinus albus HOM05D004908 ORTHO05D006418 3.0e-61 240.4 321 45.5
Sp1g16570 Schrenkiella parvula HOM05D004908 ORTHO05D006418 5.1e-61 239.6 346 43.6
Sabra06G0175900 Salix brachista HOM05D004908 ORTHO05D006418 2.5e-60 237.3 338 45.9
BolC5t30387H Brassica oleracea HOM05D004908 ORTHO05D006418 1.2e-59 235.0 314 46.5
BcaC05g25755 Brassica carinata HOM05D004908 ORTHO05D006418 2.1e-59 234.2 320 45.3
C05p16860 Brassica napus HOM05D004908 ORTHO05D006418 2.1e-59 234.2 320 45.3
Ciclev10021158m.g Citrus clementina HOM05D004908 ORTHO05D006418 6.2e-59 232.6 341 44.9
Phvul.003G183300 Phaseolus vulgaris HOM05D004908 ORTHO05D006418 4.0e-58 229.9 323 44.3
VMungo1215G2693 Vigna mungo HOM05D004908 ORTHO05D006418 2.0e-57 227.6 314 44.9
Rhsim08G0143800 Rhododendron simsii HOM05D004908 ORTHO05D006418 2.6e-57 227.3 388 40.5
Hund02570 Selenicereus undatus HOM05D004908 ORTHO05D006418 4.4e-57 226.5 352 42.6
THA.LOC104808039 Tarenaya hassleriana HOM05D004908 ORTHO05D006418 5.8e-57 226.1 330 43.6
Lsat_1_v5_gn_5_22901 Lactuca sativa HOM05D004908 ORTHO05D006418 9.9e-57 225.3 339 43.7
Eucgr.B00624 Eucalyptus grandis HOM05D004908 ORTHO05D006418 2.2e-56 224.2 346 42.5
TAR371G0785 Trochodendron aralioides HOM05D004908 ORTHO05D006418 1.1e-55 221.9 342 43.6
arahy.Tifrunner.gnm1.ann1.J6BFMQ Arachis hypogaea HOM05D004908 ORTHO05D006418 3.2e-55 220.3 319 44.5
arahy.Tifrunner.gnm1.ann1.PAN20U Arachis hypogaea HOM05D004908 ORTHO05D006418 3.2e-55 220.3 319 44.5
MELO3C002041.2 Cucumis melo HOM05D004908 ORTHO05D006418 4.6e-54 216.5 323 43.7
Ah.11g047620 Amaranthus hybridus HOM05D004908 ORTHO05D006418 6.0e-54 216.1 340 42.1
AUR62039652 Chenopodium quinoa HOM05D004908 ORTHO05D006418 6.0e-54 216.1 347 43.5
Aqoxy3G03654 Aquilegia oxysepala HOM05D004908 ORTHO05D006418 7.8e-54 215.7 341 41.3
Lj9C439G11 Lonicera japonica HOM05D004908 ORTHO05D006418 7.8e-54 215.7 216 53.7
Peaxi162Scf01223g00009 Petunia axillaris HOM05D004908 ORTHO05D006418 7.8e-54 215.7 337 42.1
Aa31LG7G3360 Aethionema arabicum HOM05D004908 ORTHO05D006418 2.3e-53 214.2 339 41.0
AUR62021531 Chenopodium quinoa HOM05D004908 ORTHO05D006418 5.1e-53 213.0 356 41.3
Nn4g23471 Nelumbo nucifera HOM05D004908 ORTHO05D006418 6.6e-53 212.6 362 42.0
Duzib205G0531 Durio zibethinus HOM05D004908 ORTHO05D006418 1.1e-52 211.8 360 41.7
HanXRQChr05g0153521 Helianthus annuus HOM05D004908 ORTHO05D006418 1.5e-52 211.5 337 42.1
Sopen12g018880 Solanum pennellii HOM05D004908 ORTHO05D006418 4.3e-52 209.9 343 42.9
ECA246G3883 Erigeron canadensis HOM05D004908 ORTHO05D006418 2.1e-51 207.6 239 48.5
Oeu032097.2 Olea europaea HOM05D004908 ORTHO05D006418 1.4e-50 204.9 381 39.4
Medtr4g109700 Medicago truncatula HOM05D004908 ORTHO05D006418 3.1e-50 203.8 314 42.4
TPR.G1983 Trifolium pratense HOM05D004908 ORTHO05D006418 6.9e-50 202.6 252 47.6
Manes.14G087101 Manihot esculenta HOM05D004908 ORTHO05D006418 9.9e-49 198.7 349 39.8
Lj4g0028183 Lotus japonicus HOM05D004908 ORTHO05D006418 1.7e-48 198.0 318 41.2
MBI16_g10851_MAGBIO Magnolia biondii HOM05D004908 ORTHO05D006418 3.8e-48 196.8 279 42.3
MSTRG.9592 Avicennia marina HOM05D004908 ORTHO05D006418 6.4e-48 196.1 350 40.0
EL10Ac5g11159 Beta vulgaris HOM05D004908 ORTHO05D006418 2.4e-47 194.1 216 50.9
Nitab4.5_0001797g0080 Nicotiana tabacum HOM05D004908 ORTHO05D006418 5.4e-47 193.0 350 40.9
PSO478G4625 Papaver somniferum HOM05D004908 ORTHO05D006418 1.2e-46 191.8 258 43.4
Migut.D01626 Erythranthe guttata HOM05D004908 ORTHO05D006418 2.7e-46 190.7 297 41.4
SHI17490 Sapria himalayana HOM05D004908 ORTHO05D006418 1.0e-45 188.7 206 51.0
FAN13G1644 Fragaria x ananassa HOM05D004908 ORTHO05D006418 3.3e-44 183.7 204 50.5
DCAR_011562 Daucus carota HOM05D004908 ORTHO05D006418 5.6e-44 183.0 276 44.2
Sc04g0004310 Simmondsia chinensis HOM05D004908 ORTHO05D006418 2.1e-43 181.0 340 39.7
FvH4_5g13610 Fragaria vesca HOM05D004908 ORTHO05D006418 4.8e-43 179.9 92 100.0
SGA_v2.0_scaffold51G18774 Striga asiatica HOM05D004908 ORTHO05D006418 4.0e-42 176.8 359 37.3
SalBow7G1843 Salvia bowleyana HOM05D004908 ORTHO05D006418 5.3e-42 176.4 212 43.4
Nitab4.5_0006506g0020 Nicotiana tabacum HOM05D004908 ORTHO05D006418 7.6e-41 172.6 205 49.3
vmacro17622 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 2.9e-40 170.6 211 47.4
PGR083G2541 Punica granatum HOM05D004908 ORTHO05D006418 4.9e-40 169.9 325 36.0
PSO017G5063 Papaver somniferum HOM05D004908 ORTHO05D006418 6.4e-40 169.5 341 38.4
PSO017G6704 Papaver somniferum HOM05D004908 ORTHO05D006418 6.4e-40 169.5 341 38.7
unitig_699.g19027 Utricularia gibba HOM05D004908 ORTHO05D006418 8.4e-40 169.1 201 46.3
HPP92_019201 Vanilla planifolia HOM05D004908 ORTHO05D006418 8.4e-40 169.1 212 45.3
CDE07G0469 Ceratophyllum demersum HOM05D004908 ORTHO05D006418 3.2e-39 167.2 336 34.8
Os01g0763100 Oryza sativa ssp. japonica HOM05D004908 ORTHO05D006418 1.2e-38 165.2 238 43.3
AT1G74130 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 3.0e-37 160.6 290 36.2
Gohir.D10G255500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 3.0e-37 160.6 129 65.9
ATR0827G189 Amborella trichopoda HOM05D004908 ORTHO05D006418 1.1e-36 158.7 205 46.3
CARHR067290 Cardamine hirsuta HOM05D004908 ORTHO05D006418 1.9e-36 157.9 288 35.8
PSO017G2617 Papaver somniferum HOM05D004908 ORTHO05D006418 3.3e-36 157.1 285 36.8
Carub.0002s2094 Capsella rubella HOM05D004908 ORTHO05D006418 5.6e-36 156.4 334 34.7
AL2G34040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 3.4e-33 147.1 277 36.8
RcHm_v2.0_Chr1g0346931 Rosa chinensis HOM05D004908 ORTHO05D006418 1.0e-32 145.6 124 63.7
Thhalv10019561m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 3.8e-32 143.7 319 34.5
SalBow7G4422 Salvia bowleyana HOM05D004908 ORTHO05D006418 6.5e-32 142.9 219 40.2
Solyc12g038600.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 5.5e-31 139.8 131 56.5
Pp3c22_7870 Physcomitrium patens HOM05D004908 ORTHO05D006418 1.2e-30 138.7 203 40.9
Psat0s3566g0040 Pisum sativum HOM05D004908 ORTHO05D006418 1.6e-30 138.3 208 41.8
SalBow7G0217 Salvia bowleyana HOM05D004908 ORTHO05D006418 8.7e-29 132.5 213 38.0
AT1G74140 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 5.7e-28 129.8 277 32.9
Carub.0002s2095 Capsella rubella HOM05D004908 ORTHO05D006418 2.1e-27 127.9 247 35.6
BraA07t31547Z Brassica rapa HOM05D003320 ORTHO05D003941 5.3e-26 123.2 255 34.5
Zm00001eb370410 Zea mays HOM05D004908 ORTHO05D006418 6.9e-26 122.9 198 41.4
Mapoly0086s0048 Marchantia polymorpha HOM05D004908 ORTHO05D006418 1.5e-25 121.7 204 37.7
RcHm_v2.0_Chr7g0183341 Rosa chinensis HOM05D004908 ORTHO05D006418 3.4e-25 120.6 120 50.8
BcaC08g46817 Brassica carinata HOM05D004908 ORTHO05D006418 5.8e-25 119.8 318 30.2
SalBow7G4769 Salvia bowleyana HOM05D004908 ORTHO05D006418 1.0e-24 119.0 221 36.7
AagrBONN_evm.TU.Sc2ySwM_368.1628 Anthoceros agrestis HOM05D004908 ORTHO05D006418 6.5e-24 116.3 221 35.7
A07p40020 Brassica napus HOM05D003320 ORTHO05D003941 6.5e-24 116.3 261 34.1
Glyma.17G080300 Glycine max HOM05D004908 ORTHO05D006418 6.5e-24 116.3 159 44.7
MCO07G692 Micromonas commoda HOM05D004908 ORTHO05D006418 1.1e-23 115.5 237 33.3
SEGI_05482 Sequoiadendron giganteum HOM05D004908 ORTHO05D006418 1.9e-23 114.8 140 47.9
RcHm_v2.0_Chr6g0258631 Rosa chinensis HOM05D004908 ORTHO05D006418 4.6e-22 110.2 105 56.2
BcaC08g46813 Brassica carinata HOM05D004908 ORTHO05D006418 1.0e-21 109.0 236 33.1
BolC6t39860H Brassica oleracea HOM05D004908 ORTHO05D006418 3.0e-21 107.5 238 33.2
C06p48290 Brassica napus HOM05D003320 ORTHO05D003941 8.7e-21 105.9 289 31.8
C06p48280 Brassica napus HOM05D004908 ORTHO05D006418 4.3e-20 103.6 199 34.7
Actinidia13428 Actinidia chinensis HOM05D004908 ORTHO05D006418 2.8e-19 100.9 103 54.4
BcaC08g46846 Brassica carinata HOM05D003320 ORTHO05D003941 8.2e-19 99.4 274 30.7
RcHm_v2.0_Chr6g0258651 Rosa chinensis HOM05D004908 ORTHO05D006418 1.4e-18 98.6 76 68.4
vmacro17623 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 4.5e-17 93.6 96 52.1
Gohir.A06G087200 Gossypium hirsutum HOM05D004908 ORTHO05D006418 1.7e-16 91.7 64 62.5
HPP92_019191 Vanilla planifolia HOM05D004908 ORTHO05D006418 1.7e-16 91.7 109 45.0
Actinidia04812 Actinidia chinensis HOM05D004908 ORTHO05D006418 1.4e-15 88.6 219 36.5
Solyc12g038590.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 4.3e-12 77.0 220 34.1
RcHm_v2.0_Chr1g0346941 Rosa chinensis HOM05D004908 ORTHO05D006418 4.1e-10 70.5 74 47.3
BcaC08g46819 Brassica carinata HOM05D004908 ORTHO05D039080 1.2e-09 68.9 97 41.2
Gohir.A07G149500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 3.4e-09 67.4 42 69.0
CBR_g24070 Chara braunii HOM05D000019 ORTHO05D000002 1.7e-08 65.1 105 36.2
BolC6t39863H Brassica oleracea HOM05D004908 ORTHO05D039080 5.0e-08 63.5 171 31.0
Dinv17434 Davidia involucrata HOM05D004908 ORTHO05D006418 1.6e-06 58.5 69 49.3
RcHm_v2.0_Chr6g0263661 Rosa chinensis HOM05D004908 ORTHO05D006418 4.7e-06 57.0 53 47.2


User provided reference genes

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