Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G1875 Fragaria x ananassa HOM05D004914 ORTHO05D006512 9.5e-74 280.0 135 100.0
FvH4_5g24140 Fragaria vesca HOM05D004914 ORTHO05D006512 7.5e-71 270.4 130 100.0
RcHm_v2.0_Chr7g0213721 Rosa chinensis HOM05D004914 ORTHO05D006512 3.1e-69 265.0 130 97.7
RcHm_v2.0_Chr4g0401521 Rosa chinensis HOM05D004914 ORTHO05D006512 5.0e-67 257.7 130 94.6
RcHm_v2.0_Chr7g0213811 Rosa chinensis HOM05D004914 ORTHO05D006512 8.6e-67 256.9 130 96.2
RcHm_v2.0_Chr4g0401421 Rosa chinensis HOM05D004914 ORTHO05D006512 1.9e-66 255.8 130 93.8
Nn1g02045 Nelumbo nucifera HOM05D004914 ORTHO05D006512 3.7e-62 241.5 130 88.5
Nn3g19257 Nelumbo nucifera HOM05D004914 ORTHO05D006512 2.4e-61 238.8 130 87.7
Duzib205G0746 Durio zibethinus HOM05D004914 ORTHO05D006512 7.0e-61 237.3 125 89.6
FAN13G2505 Fragaria x ananassa HOM05D004914 ORTHO05D006512 9.2e-61 236.9 149 81.2
Gohir.A03G179800 Gossypium hirsutum HOM05D004914 ORTHO05D006512 9.2e-61 236.9 124 89.5
Gohir.D02G202952 Gossypium hirsutum HOM05D004914 ORTHO05D006512 9.2e-61 236.9 124 89.5
Gorai.005G228700 Gossypium raimondii HOM05D004914 ORTHO05D006512 9.2e-61 236.9 124 89.5
GSVIVG01022810001 Vitis vinifera HOM05D004914 ORTHO05D006512 1.2e-60 236.5 125 89.6
Atru.chr6.2105 Acer truncatum HOM05D004914 ORTHO05D006512 1.6e-60 236.1 133 86.5
MD06G1017300 Malus domestica HOM05D004914 ORTHO05D006512 2.7e-60 235.3 131 88.5
CANSAT35G0949 Cannabis sativa HOM05D004914 ORTHO05D006512 5.9e-60 234.2 131 89.3
Oeu046797.1 Olea europaea HOM05D004914 ORTHO05D006512 1.3e-59 233.0 133 84.2
Sabra03G0071100 Salix brachista HOM05D004914 ORTHO05D006512 3.0e-59 231.9 132 85.6
ECA240G3397 Erigeron canadensis HOM05D004914 ORTHO05D006512 3.9e-59 231.5 123 91.1
Oeu046798.1 Olea europaea HOM05D004914 ORTHO05D006512 3.9e-59 231.5 132 85.6
Prupe.5G019100 Prunus persica HOM05D004914 ORTHO05D006512 3.9e-59 231.5 132 87.9
MSTRG.25735 Avicennia marina HOM05D004914 ORTHO05D006512 5.0e-59 231.1 130 86.9
CSS0043328 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 8.6e-59 230.3 130 86.9
Potri.003G104000 Populus trichocarpa HOM05D004914 ORTHO05D006512 8.6e-59 230.3 130 87.7
Actinidia01258 Actinidia chinensis HOM05D004914 ORTHO05D006512 1.1e-58 229.9 130 86.2
Ca_25087_v3 Cicer arietinum L. HOM05D004914 ORTHO05D006512 1.1e-58 229.9 131 84.7
Ciclev10000444m.g Citrus clementina HOM05D004914 ORTHO05D006512 1.1e-58 229.9 128 86.7
Medtr5g026640 Medicago truncatula HOM05D004914 ORTHO05D006512 1.1e-58 229.9 128 85.9
PSO717G0130 Papaver somniferum HOM05D004914 ORTHO05D006512 1.1e-58 229.9 130 85.4
CSS0049486 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.5e-58 229.6 130 86.9
FAN04G0884 Fragaria x ananassa HOM05D004914 ORTHO05D006512 1.9e-58 229.2 148 79.1
Glyma.04G123700 Glycine max HOM05D004914 ORTHO05D006512 1.9e-58 229.2 131 85.5
Lj2g0015407 Lotus japonicus HOM05D004914 ORTHO05D006512 1.9e-58 229.2 129 86.8
Peaxi162Scf00053g00525 Petunia axillaris HOM05D004914 ORTHO05D006512 1.9e-58 229.2 130 86.2
Lalb_Chr05g0215361 Lupinus albus HOM05D004914 ORTHO05D006512 3.3e-58 228.4 129 86.8
TAR375G1103 Trochodendron aralioides HOM05D004914 ORTHO05D006512 3.3e-58 228.4 126 86.5
Aqoxy7G00885 Aquilegia oxysepala HOM05D004914 ORTHO05D006512 4.3e-58 228.0 123 87.0
Carub.0008s0273 Capsella rubella HOM05D004914 ORTHO05D006512 4.3e-58 228.0 123 87.8
Lsat_1_v5_gn_5_55660 Lactuca sativa HOM05D004914 ORTHO05D006512 4.3e-58 228.0 125 87.2
HanXRQChr13g0411091 Helianthus annuus HOM05D004914 ORTHO05D006512 7.3e-58 227.3 123 89.4
Psat2g142640 Pisum sativum HOM05D004914 ORTHO05D006512 7.3e-58 227.3 128 85.2
Dinv37416 Davidia involucrata HOM05D004914 ORTHO05D006512 9.5e-58 226.9 125 85.6
Eucgr.E01216 Eucalyptus grandis HOM05D004914 ORTHO05D006512 9.5e-58 226.9 129 86.0
Eucgr.E01217 Eucalyptus grandis HOM05D004914 ORTHO05D006512 9.5e-58 226.9 129 86.0
Eucgr.E01215 Eucalyptus grandis HOM05D004914 ORTHO05D006512 1.2e-57 226.5 129 86.0
Manes.17G007000 Manihot esculenta HOM05D004914 ORTHO05D006512 1.2e-57 226.5 133 84.2
Thecc.03G324700 Theobroma cacao HOM05D004914 ORTHO05D006512 1.2e-57 226.5 125 84.0
Aa31LG9G7630 Aethionema arabicum HOM05D004914 ORTHO05D006512 1.6e-57 226.1 125 84.8
CSS0023780 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.6e-57 226.1 130 86.2
CSS0032490 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.6e-57 226.1 130 85.4
AL8G13420 Arabidopsis lyrata HOM05D004914 ORTHO05D006512 2.1e-57 225.7 123 87.8
Solyc08g075570.4 Solanum lycopersicum HOM05D004914 ORTHO05D006512 2.1e-57 225.7 125 86.4
Sopen08g024250 Solanum pennellii HOM05D004914 ORTHO05D006512 2.1e-57 225.7 125 86.4
PGSC0003DMG401007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 2.1e-57 225.7 125 86.4
CiPaw.13G121600 Carya illinoinensis HOM05D004914 ORTHO05D006512 2.8e-57 225.3 130 83.8
SalBow4G0569 Salvia bowleyana HOM05D004914 ORTHO05D006512 2.8e-57 225.3 130 84.6
Cc08_g05310 Coffea canephora HOM05D004914 ORTHO05D006512 3.6e-57 224.9 131 84.0
TPR.G17253 Trifolium pratense HOM05D004914 ORTHO05D006512 3.6e-57 224.9 129 84.5
EL10Ac5g11909 Beta vulgaris HOM05D004914 ORTHO05D006512 4.7e-57 224.6 126 84.9
CDE12G0485 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 4.7e-57 224.6 125 83.2
Phvul.002G127200 Phaseolus vulgaris HOM05D004914 ORTHO05D006512 4.7e-57 224.6 129 85.3
Cpa.g.sc90.24 Carica papaya HOM05D004914 ORTHO05D006512 6.2e-57 224.2 126 86.5
AT5G45380 Arabidopsis thaliana HOM05D004914 ORTHO05D006512 1.0e-56 223.4 124 88.7
CDE01G0684 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 1.4e-56 223.0 123 84.6
ClCG10G000930 Citrullus lanatus HOM05D004914 ORTHO05D006512 3.1e-56 221.9 131 80.9
TWI12G0750 Tripterygium wilfordii HOM05D004914 ORTHO05D006512 3.1e-56 221.9 130 83.1
ATR0829G119 Amborella trichopoda HOM05D004914 ORTHO05D006512 4.0e-56 221.5 130 83.1
Sed0010004 Sechium edule HOM05D004914 ORTHO05D006512 5.2e-56 221.1 130 77.7
VMungo1215G3133 Vigna mungo HOM05D004914 ORTHO05D006512 6.8e-56 220.7 129 82.9
MELO3C013790.2 Cucumis melo HOM05D004914 ORTHO05D006512 8.9e-56 220.3 130 80.0
CsaV3_3G001000 Cucumis sativus L. HOM05D004914 ORTHO05D006512 1.2e-55 219.9 130 80.0
HPP92_015125 Vanilla planifolia HOM05D004914 ORTHO05D006512 1.2e-55 219.9 131 81.7
CARHR176690 Cardamine hirsuta HOM05D004914 ORTHO05D006512 2.6e-55 218.8 123 85.4
SEGI_09515 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 2.6e-55 218.8 127 82.7
PGR042G1968 Punica granatum HOM05D004914 ORTHO05D006512 4.4e-55 218.0 129 82.9
Sp2g10330 Schrenkiella parvula HOM05D004914 ORTHO05D006512 4.4e-55 218.0 123 85.4
BcaB07g30458 Brassica carinata HOM05D004914 ORTHO05D006512 5.8e-55 217.6 123 82.9
Migut.A00542 Erythranthe guttata HOM05D004914 ORTHO05D006512 5.8e-55 217.6 130 83.1
BcaC04g21765 Brassica carinata HOM05D004914 ORTHO05D006512 7.5e-55 217.2 123 85.4
BolC9t55648H Brassica oleracea HOM05D004914 ORTHO05D006512 7.5e-55 217.2 123 85.4
BraA09t37776Z Brassica rapa HOM05D004914 ORTHO05D006512 7.5e-55 217.2 123 85.4
A09p21740 Brassica napus HOM05D004914 ORTHO05D006512 9.8e-55 216.9 123 84.6
BcaB07g30888 Brassica carinata HOM05D004914 ORTHO05D006512 1.3e-54 216.5 123 84.6
Thhalv10000803m.g Eutrema salsugineum HOM05D004914 ORTHO05D006512 2.2e-54 215.7 123 82.9
A02p29100 Brassica napus HOM05D004914 ORTHO05D006512 2.9e-54 215.3 125 82.4
BraA02t07943Z Brassica rapa HOM05D004914 ORTHO05D006512 2.9e-54 215.3 125 82.4
C09p27840 Brassica napus HOM05D004914 ORTHO05D006512 6.4e-54 214.2 123 84.6
BcaC03g16746 Brassica carinata HOM05D004914 ORTHO05D006512 8.3e-54 213.8 125 81.6
C02p46180 Brassica napus HOM05D004914 ORTHO05D006512 8.3e-54 213.8 125 81.6
BolC2t10674H Brassica oleracea HOM05D004914 ORTHO05D006512 8.3e-54 213.8 125 81.6
SEGI_28013 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 1.4e-53 213.0 123 83.7
CAN.G1731.1 Capsicum annuum HOM05D004914 ORTHO05D006512 1.9e-53 212.6 128 80.5
Zm00001eb279810 Zea mays HOM05D004914 ORTHO05D006512 9.2e-53 210.3 133 78.9
SEGI_38788 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 2.0e-52 209.1 124 81.5
Lj8C331T9 Lonicera japonica HOM05D004914 ORTHO05D006512 2.3e-51 205.7 115 88.7
Os10g0580400 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D006512 2.3e-51 205.7 125 80.0
SMO134G0146 Selaginella moellendorffii HOM05D004914 ORTHO05D006512 6.6e-51 204.1 124 77.4
arahy.Tifrunner.gnm1.ann1.AE6EEZ Arachis hypogaea HOM05D004914 ORTHO05D006512 3.3e-50 201.8 115 83.5
arahy.Tifrunner.gnm1.ann1.Q0IN0Q Arachis hypogaea HOM05D004914 ORTHO05D006512 3.3e-50 201.8 115 83.5
Mapoly0022s0194 Marchantia polymorpha HOM05D004914 ORTHO05D006512 3.6e-49 198.4 126 76.2
Mapoly0244s0005 Marchantia polymorpha HOM05D004914 ORTHO05D006512 3.6e-49 198.4 126 76.2
Mapoly0339s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 3.6e-49 198.4 126 76.2
DCAR_006313 Daucus carota HOM05D004914 ORTHO05D006512 1.4e-48 196.4 111 87.4
CSS0040630 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 3.1e-48 195.3 157 66.9
SEGI_16876 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 3.1e-48 195.3 123 77.2
CSS0001315 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 8.9e-48 193.7 157 65.6
Pp3c14_7160 Physcomitrium patens HOM05D004914 ORTHO05D006512 2.2e-46 189.1 117 78.6
Pp3c1_21890 Physcomitrium patens HOM05D004914 ORTHO05D006512 6.4e-46 187.6 130 69.2
vmacro00050 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 9.5e-42 173.7 132 65.9
vmacro00075 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 3.8e-38 161.8 98 80.6
COL.COLO4_37234 Corchorus olitorius HOM05D004914 ORTHO05D006512 6.4e-38 161.0 98 79.6
CSS0048600 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.9e-37 159.5 98 82.7
SGA_v2.0_scaffold96G29079 Striga asiatica HOM05D004914 ORTHO05D006512 7.1e-37 157.5 91 84.6
QL12p001923 Quercus lobata HOM05D004914 ORTHO05D006512 1.2e-36 156.8 95 81.1
Rhsim11G0034500 Rhododendron simsii HOM05D004914 ORTHO05D006512 1.2e-36 156.8 98 79.6
QL12p001913 Quercus lobata HOM05D004914 ORTHO05D006512 2.7e-36 155.6 95 81.1
MCO16G134 Micromonas commoda HOM05D004914 ORTHO05D006512 1.0e-35 153.7 105 69.5
unitig_92.g28131 Utricularia gibba HOM05D004914 ORTHO05D006512 2.3e-35 152.5 118 69.5
CSS0015562 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.8e-33 145.6 122 63.9
Nitab4.5_0016045g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 8.1e-33 144.1 70 92.9
Mapoly0006s0303 Marchantia polymorpha HOM05D004914 ORTHO05D006512 2.3e-27 125.9 102 54.9
AagrBONN_evm.TU.Sc2ySwM_228.2053 Anthoceros agrestis HOM05D004914 ORTHO05D006512 3.0e-27 125.6 102 56.9
Cre08.g360200 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 3.3e-26 122.1 104 51.9
AagrBONN_evm.TU.Sc2ySwM_117.1769 Anthoceros agrestis HOM05D004914 ORTHO05D006512 9.6e-26 120.6 105 53.3
arahy.Tifrunner.gnm1.ann1.N8W4DB Arachis hypogaea HOM05D004914 ORTHO05D000389 9.6e-26 120.6 63 85.7
Cre08.g360250 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 1.1e-24 117.1 104 51.0
arahy.Tifrunner.gnm1.ann1.3D8EL1 Arachis hypogaea HOM05D004914 ORTHO05D000389 5.3e-24 114.8 59 88.1
AagrBONN_evm.TU.Sc2ySwM_117.1801 Anthoceros agrestis HOM05D004914 ORTHO05D006512 1.3e-22 110.2 101 50.5
Cre17.g703800 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 1.1e-21 107.1 104 48.1
CBR_g12519 Chara braunii HOM05D004914 ORTHO05D006512 4.2e-21 105.1 98 55.1
AagrBONN_evm.TU.Sc2ySwM_228.2050 Anthoceros agrestis HOM05D004914 ORTHO05D006512 2.1e-20 102.8 90 54.4
AUR62027313 Chenopodium quinoa HOM05D004914 ORTHO05D006512 2.2e-14 82.8 60 71.7
CSS0022246 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D112219 4.9e-14 81.6 62 69.4
CSS0011428 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 5.1e-11 71.6 34 91.2
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 8.7e-11 70.9 46 69.6
arahy.Tifrunner.gnm1.ann1.D5QS8R Arachis hypogaea HOM05D000487 ORTHO05D000389 4.5e-07 58.5 30 76.7


User provided reference genes

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