Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G1872 Fragaria x ananassa HOM05D004289 ORTHO05D005141 2.2e-61 238.8 123 100.0
FvH4_5g32580 Fragaria vesca HOM05D004289 ORTHO05D005141 9.9e-38 160.2 84 100.0
FAN13G3078 Fragaria x ananassa HOM05D004289 ORTHO05D005141 1.4e-36 156.4 84 97.6
FAN04G1595 Fragaria x ananassa HOM05D004289 ORTHO05D005141 5.5e-36 154.5 84 96.4
FAN08G1828 Fragaria x ananassa HOM05D004289 ORTHO05D206118 3.8e-29 131.7 66 97.0
RcHm_v2.0_Chr7g0229261 Rosa chinensis HOM05D004289 ORTHO05D005141 1.1e-28 130.2 87 83.9
RcHm_v2.0_Chr3g0495521 Rosa chinensis HOM05D004289 ORTHO05D005141 9.0e-23 110.5 70 82.9
RcHm_v2.0_Chr5g0063911 Rosa chinensis HOM05D004289 ORTHO05D005141 6.5e-21 104.4 70 78.6
MD15G1403500 Malus domestica HOM05D004289 ORTHO05D005141 2.1e-19 99.4 101 58.4
Prupe.1G549500 Prunus persica HOM05D004289 ORTHO05D005141 1.5e-17 93.2 98 59.2
MD08G1216400 Malus domestica HOM05D004289 ORTHO05D005141 1.9e-17 92.8 99 58.6
QL09p003196 Quercus lobata HOM05D004289 ORTHO05D005141 3.3e-17 92.0 91 63.7
QL09p004791 Quercus lobata HOM05D004289 ORTHO05D005141 3.3e-17 92.0 91 63.7
MD05G1210300 Malus domestica HOM05D004289 ORTHO05D005141 4.3e-17 91.7 99 57.6
RcHm_v2.0_Chr7g0230041 Rosa chinensis HOM05D004289 ORTHO05D005141 4.8e-16 88.2 61 72.1
MELO3C022208.2 Cucumis melo HOM05D004289 ORTHO05D005141 8.2e-16 87.4 94 57.4
TPR.G34161 Trifolium pratense HOM05D004289 ORTHO05D005141 3.1e-15 85.5 79 63.3
Aqoxy5G00854 Aquilegia oxysepala HOM05D004289 ORTHO05D005141 4.1e-15 85.1 91 52.7
CsaV3_5G040360 Cucumis sativus L. HOM05D004289 ORTHO05D005141 4.1e-15 85.1 94 56.4
Medtr4g032200 Medicago truncatula HOM05D004289 ORTHO05D005141 4.1e-15 85.1 60 71.7
CiPaw.04G012500 Carya illinoinensis HOM05D004289 ORTHO05D005141 5.3e-15 84.7 91 57.1
ClCG08G000420 Citrullus lanatus HOM05D004289 ORTHO05D005141 5.3e-15 84.7 95 56.8
CiPaw.03G018600 Carya illinoinensis HOM05D004289 ORTHO05D005141 6.9e-15 84.3 94 58.5
Glyma.08G237900 Glycine max HOM05D004289 ORTHO05D005141 6.9e-15 84.3 60 70.0
TAR628G0462 Trochodendron aralioides HOM05D004289 ORTHO05D005141 6.9e-15 84.3 91 56.0
SalBow7G0958 Salvia bowleyana HOM05D004289 ORTHO05D005141 1.2e-14 83.6 64 64.1
Phvul.011G000300 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 1.5e-14 83.2 60 68.3
Sabra19G0088300 Salix brachista HOM05D004289 ORTHO05D005141 2.0e-14 82.8 92 52.2
Psat7g226600 Pisum sativum HOM05D004289 ORTHO05D005141 2.6e-14 82.4 60 70.0
Cfa008122 Carpinus fangiana HOM05D000042 ORTHO05D000028 4.5e-14 81.6 60 70.0
MBI17_g24966_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 4.5e-14 81.6 80 53.8
Haze_13910 Corylus avellana HOM05D002143 ORTHO05D002260 7.7e-14 80.9 78 59.0
Lj3g0023226 Lotus japonicus HOM05D004289 ORTHO05D005141 7.7e-14 80.9 60 66.7
GSVIVG01025943001 Vitis vinifera HOM05D004289 ORTHO05D005141 7.7e-14 80.9 92 51.1
Sed0006384 Sechium edule HOM05D004289 ORTHO05D005141 1.3e-13 80.1 91 52.7
TAR381G0514 Trochodendron aralioides HOM05D004289 ORTHO05D005141 1.3e-13 80.1 91 53.8
Nn5g27488 Nelumbo nucifera HOM05D004289 ORTHO05D005141 2.9e-13 79.0 91 52.7
Potri.019G077100 Populus trichocarpa HOM05D004289 ORTHO05D005141 2.9e-13 79.0 90 51.1
TWI23G1156 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 2.9e-13 79.0 85 51.8
Sp2g05730 Schrenkiella parvula HOM05D004289 ORTHO05D005141 3.8e-13 78.6 92 48.9
VMungo0540G1552 Vigna mungo HOM05D004289 ORTHO05D005141 3.8e-13 78.6 60 63.3
MBI06_g06694_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 6.5e-13 77.8 69 55.1
TWI14G0848 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 6.5e-13 77.8 81 53.1
unitig_32.g11200 Utricularia gibba HOM05D004289 ORTHO05D005141 8.5e-13 77.4 92 48.9
AUR62028456 Chenopodium quinoa HOM05D004289 ORTHO05D005141 1.1e-12 77.0 92 48.9
Duzib052G0484 Durio zibethinus HOM05D004289 ORTHO05D005141 1.9e-12 76.3 90 50.0
ATR1136G135 Amborella trichopoda HOM05D004289 ORTHO05D005141 2.5e-12 75.9 66 57.6
CARHR054450 Cardamine hirsuta HOM05D004289 ORTHO05D005141 2.5e-12 75.9 79 53.2
AUR62042238 Chenopodium quinoa HOM05D004289 ORTHO05D005141 2.5e-12 75.9 92 48.9
Gohir.A03G215700 Gossypium hirsutum HOM05D004289 ORTHO05D005141 2.5e-12 75.9 90 50.0
Oeu048223.2 Olea europaea HOM05D004289 ORTHO05D005141 3.2e-12 75.5 97 43.3
Migut.C01335 Erythranthe guttata HOM05D004289 ORTHO05D005141 5.5e-12 74.7 81 51.9
Gohir.D02G237200 Gossypium hirsutum HOM05D004289 ORTHO05D005141 5.5e-12 74.7 90 50.0
Gorai.005G265800 Gossypium raimondii HOM05D004289 ORTHO05D005141 5.5e-12 74.7 90 50.0
Sabra01G0171700 Salix brachista HOM05D004289 ORTHO05D005141 5.5e-12 74.7 92 46.7
Potri.004G226100 Populus trichocarpa HOM05D004289 ORTHO05D005141 9.4e-12 73.9 92 45.7
Thecc.02G016600 Theobroma cacao HOM05D004289 ORTHO05D005141 9.4e-12 73.9 89 52.8
Carub.0002s0680 Capsella rubella HOM05D004289 ORTHO05D005141 1.2e-11 73.6 85 50.6
Peaxi162Scf00688g00334 Petunia axillaris HOM05D004289 ORTHO05D005141 1.2e-11 73.6 82 51.2
arahy.Tifrunner.gnm1.ann1.291MDK Arachis hypogaea HOM05D004289 ORTHO05D005141 2.1e-11 72.8 60 61.7
arahy.Tifrunner.gnm1.ann1.M3EZX1 Arachis hypogaea HOM05D004289 ORTHO05D005141 2.1e-11 72.8 60 61.7
Nitab4.5_0029023g0010 Nicotiana tabacum HOM05D004289 ORTHO05D005141 2.1e-11 72.8 91 50.5
MBI18_g30384_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 2.7e-11 72.4 69 53.6
Sc16g0004250 Simmondsia chinensis HOM05D004289 ORTHO05D005141 2.7e-11 72.4 89 48.3
EL10Ac6g14140 Beta vulgaris HOM05D004289 ORTHO05D005141 3.6e-11 72.0 62 58.1
C05p07700 Brassica napus HOM05D004289 ORTHO05D005141 3.6e-11 72.0 90 45.6
C08p13100 Brassica napus HOM05D004289 ORTHO05D005141 3.6e-11 72.0 90 45.6
MD15G1438300 Malus domestica HOM05D004289 ORTHO05D005141 4.7e-11 71.6 85 50.6
GSVIVG01023230001 Vitis vinifera HOM05D004289 ORTHO05D005141 7.9e-11 70.9 89 51.7
AT1G57765 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 1.0e-10 70.5 75 48.0
BraA06t23844Z Brassica rapa HOM05D004289 ORTHO05D005141 1.0e-10 70.5 87 49.4
CSS0038337 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 1.0e-10 70.5 91 47.3
HanXRQChr03g0067991 Helianthus annuus HOM05D004289 ORTHO05D005141 1.0e-10 70.5 76 48.7
Sopen11g012540 Solanum pennellii HOM05D004289 ORTHO05D005141 1.0e-10 70.5 86 51.2
AL1G67510 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 1.4e-10 70.1 81 49.4
AT1G09645 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 1.4e-10 70.1 86 46.5
SGA_v2.0_scaffold131G34372 Striga asiatica HOM05D004289 ORTHO05D005141 1.4e-10 70.1 89 48.3
AL1G20190 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 1.8e-10 69.7 86 45.3
CSS0038950 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 1.8e-10 69.7 91 46.2
COL.COLO4_17708 Corchorus olitorius HOM05D004289 ORTHO05D005141 1.8e-10 69.7 90 44.4
THA.LOC104823700 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 1.8e-10 69.7 78 50.0
Carub.0001s0900 Capsella rubella HOM05D004289 ORTHO05D005141 2.3e-10 69.3 81 46.9
Ah.02g128340 Amaranthus hybridus HOM05D004289 ORTHO05D005141 3.0e-10 68.9 68 57.4
BcaB03g13311 Brassica carinata HOM05D004289 ORTHO05D005141 3.0e-10 68.9 84 45.2
A06p06330 Brassica napus HOM05D004289 ORTHO05D005141 3.0e-10 68.9 79 49.4
Thhalv10023770m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 3.0e-10 68.9 82 43.9
MD08G1244000 Malus domestica HOM05D004289 ORTHO05D005141 3.0e-10 68.9 94 46.8
PSO170G0294 Papaver somniferum HOM05D004289 ORTHO05D005141 3.0e-10 68.9 66 54.5
Atru.chr6.550 Acer truncatum HOM05D004289 ORTHO05D005141 3.9e-10 68.6 46 69.6
Thhalv10009166m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 3.9e-10 68.6 86 44.2
PGSC0003DMG400025523 Solanum tuberosum HOM05D004289 ORTHO05D005141 3.9e-10 68.6 83 48.2
BolC5t29521H Brassica oleracea HOM05D004289 ORTHO05D005141 5.1e-10 68.2 64 51.6
BolC8t48938H Brassica oleracea HOM05D002143 ORTHO05D002260 5.1e-10 68.2 65 53.8
ECA236G0617 Erigeron canadensis HOM05D004289 ORTHO05D005141 5.1e-10 68.2 79 48.1
Nitab4.5_0000016g0420 Nicotiana tabacum HOM05D004289 ORTHO05D005141 5.1e-10 68.2 100 44.0
THA.LOC104816824 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 5.1e-10 68.2 78 47.4
Actinidia38989 Actinidia chinensis HOM05D004289 ORTHO05D005141 6.7e-10 67.8 95 44.2
Cc10_g09380 Coffea canephora HOM05D004289 ORTHO05D005141 6.7e-10 67.8 57 57.9
PSO017G2658 Papaver somniferum HOM05D004289 ORTHO05D005141 8.8e-10 67.4 84 50.0
Ciclev10003782m.g Citrus clementina HOM05D004289 ORTHO05D005141 1.1e-09 67.0 72 54.2
Lsat_1_v5_gn_5_104580 Lactuca sativa HOM05D004289 ORTHO05D005141 1.1e-09 67.0 89 48.3
Prupe.1G581300 Prunus persica HOM05D004289 ORTHO05D005141 1.1e-09 67.0 92 45.7
vmacro19856 Vaccinium macrocarpon HOM05D004289 ORTHO05D005141 1.1e-09 67.0 67 53.7
BraA08t35355Z Brassica rapa HOM05D002143 ORTHO05D002260 2.0e-09 66.2 65 53.8
CARHR009620 Cardamine hirsuta HOM05D004289 ORTHO05D005141 2.0e-09 66.2 86 44.2
Potri.003G005400 Populus trichocarpa HOM05D004289 ORTHO05D005141 2.0e-09 66.2 95 42.1
Sp1g08260 Schrenkiella parvula HOM05D004289 ORTHO05D005141 2.0e-09 66.2 84 44.0
HanXRQChr06g0182751 Helianthus annuus HOM05D004289 ORTHO05D005141 2.6e-09 65.9 90 47.8
Aa31LG1G5340 Aethionema arabicum HOM05D004289 ORTHO05D005141 3.3e-09 65.5 86 47.7
RcHm_v2.0_Chr7g0220501 Rosa chinensis HOM05D004289 ORTHO05D005141 4.4e-09 65.1 92 45.7
FAN10G0807 Fragaria x ananassa HOM05D004289 ORTHO05D005141 5.7e-09 64.7 80 48.8
BcaC07g41867 Brassica carinata HOM05D004289 ORTHO05D005141 9.7e-09 63.9 46 63.0
C08p49340 Brassica napus HOM05D004289 ORTHO05D005141 9.7e-09 63.9 46 63.0
Nitab4.5_0005169g0070 Nicotiana tabacum HOM05D004289 ORTHO05D005141 9.7e-09 63.9 60 53.3
HPP92_002618 Vanilla planifolia HOM05D004289 ORTHO05D005141 9.7e-09 63.9 63 47.6
HPP92_002677 Vanilla planifolia HOM05D004289 ORTHO05D005141 9.7e-09 63.9 63 47.6
BolC8t52471H Brassica oleracea HOM05D004289 ORTHO05D005141 1.3e-08 63.5 46 63.0
MELO3C016488.2 Cucumis melo HOM05D004289 ORTHO05D005141 1.3e-08 63.5 90 42.2
Oeu058640.2 Olea europaea HOM05D004289 ORTHO05D005141 2.2e-08 62.8 71 49.3
MSTRG.20324 Avicennia marina HOM05D004289 ORTHO05D005141 3.7e-08 62.0 92 41.3
Migut.B00750 Erythranthe guttata HOM05D004289 ORTHO05D005141 8.2e-08 60.8 52 65.4
Lsat_1_v5_gn_9_119620 Lactuca sativa HOM05D004289 ORTHO05D005141 8.2e-08 60.8 61 52.5
unitig_748.g7732 Utricularia gibba HOM05D004289 ORTHO05D005141 1.1e-07 60.5 65 46.2
Duzib248G0764 Durio zibethinus HOM05D004289 ORTHO05D005141 1.4e-07 60.1 40 67.5
FAN18G0926 Fragaria x ananassa HOM05D004289 ORTHO05D005141 1.4e-07 60.1 77 48.1
Manes.07G025900 Manihot esculenta HOM05D004289 ORTHO05D005141 1.4e-07 60.1 89 44.9
CDE08G0453 Ceratophyllum demersum HOM05D004289 ORTHO05D005141 2.4e-07 59.3 60 46.7
FvH4_5g28260 Fragaria vesca HOM05D004289 ORTHO05D005141 3.1e-07 58.9 59 49.2
Zm00001eb288300 Zea mays HOM05D004289 ORTHO05D005141 3.1e-07 58.9 45 62.2
PGR042G0739 Punica granatum HOM05D004289 ORTHO05D005141 4.1e-07 58.5 62 50.0
Manes.10G116200 Manihot esculenta HOM05D004289 ORTHO05D005141 5.3e-07 58.2 86 45.3
Aa31LG2G11220 Aethionema arabicum HOM05D004289 ORTHO05D005141 9.1e-07 57.4 36 69.4
VMungo0540G0867 Vigna mungo HOM05D004289 ORTHO05D005141 1.2e-06 57.0 45 55.6
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 1.5e-06 56.6 60 38.3
ATR0594G174 Amborella trichopoda HOM05D004061 ORTHO05D004693 7.7e-06 54.3 49 59.2
CiPaw.09G185500 Carya illinoinensis HOM05D004061 ORTHO05D004693 7.7e-06 54.3 69 47.8
QL02p100957 Quercus lobata HOM05D004289 ORTHO05D005141 7.7e-06 54.3 92 41.3


User provided reference genes

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