Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G1799 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.4e-41 172.6 86 100.0
FAN13G0479 Fragaria x ananassa HOM05D005222 ORTHO05D006230 7.2e-35 150.2 86 90.7
FAN08G1832 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.2e-34 149.4 86 89.5
FvH4_5g08990 Fragaria vesca HOM05D005222 ORTHO05D006230 3.6e-34 147.9 86 89.5
FAN04G2766 Fragaria x ananassa HOM05D005222 ORTHO05D006230 3.0e-33 144.8 86 87.2
RcHm_v2.0_Chr7g0189291 Rosa chinensis HOM05D005222 ORTHO05D006230 1.5e-32 142.5 86 83.7
MD06G1135800 Malus domestica HOM05D005222 ORTHO05D006230 1.0e-28 129.8 86 73.3
MD14G1151000 Malus domestica HOM05D005222 ORTHO05D006230 1.3e-28 129.4 86 73.3
Sc04g0000390 Simmondsia chinensis HOM05D005222 ORTHO05D006230 1.7e-28 129.0 86 74.4
Prupe.5G146200 Prunus persica HOM05D005222 ORTHO05D006230 2.2e-28 128.6 86 73.3
CAN.G65.111 Capsicum annuum HOM05D005222 ORTHO05D006230 3.2e-27 124.8 86 69.8
Sc22g0003810 Simmondsia chinensis HOM05D005222 ORTHO05D006230 3.2e-27 124.8 86 72.1
Cfa018742 Carpinus fangiana HOM05D005222 ORTHO05D006230 4.2e-27 124.4 86 70.9
Haze_07194 Corylus avellana HOM05D005222 ORTHO05D006230 1.6e-26 122.5 86 69.8
Peaxi162Scf01064g00238 Petunia axillaris HOM05D005222 ORTHO05D006230 6.1e-26 120.6 86 66.3
PGSC0003DMG400027040 Solanum tuberosum HOM05D005222 ORTHO05D006230 6.1e-26 120.6 101 60.4
EL10Ac5g11344 Beta vulgaris HOM05D005222 ORTHO05D006230 1.0e-25 119.8 86 68.6
HanXRQChr09g0273701 Helianthus annuus HOM05D005222 ORTHO05D006230 1.0e-25 119.8 86 66.3
Solyc06g072600.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 1.8e-25 119.0 86 67.4
Sopen06g028950 Solanum pennellii HOM05D005222 ORTHO05D006230 1.8e-25 119.0 86 67.4
CiPaw.11G003300 Carya illinoinensis HOM05D005222 ORTHO05D006230 3.0e-25 118.2 86 66.3
THA.LOC104811566 Tarenaya hassleriana HOM05D005222 ORTHO05D006230 3.0e-25 118.2 86 68.6
DCAR_016362 Daucus carota HOM05D005222 ORTHO05D006230 8.8e-25 116.7 86 62.8
Lsat_1_v5_gn_4_83361 Lactuca sativa HOM05D005222 ORTHO05D006230 2.0e-24 115.5 86 64.0
Aa31LG3G7230 Aethionema arabicum HOM05D005222 ORTHO05D006230 2.6e-24 115.2 86 67.4
CANSAT80G0210 Cannabis sativa HOM05D005222 ORTHO05D006230 2.6e-24 115.2 84 63.1
ECA232G5061 Erigeron canadensis HOM05D005222 ORTHO05D006230 2.6e-24 115.2 86 64.0
PGR083G1056 Punica granatum HOM05D005222 ORTHO05D006230 3.3e-24 114.8 85 65.9
Hund02474 Selenicereus undatus HOM05D005222 ORTHO05D006230 3.3e-24 114.8 86 66.3
Eucgr.B00077 Eucalyptus grandis HOM05D005222 ORTHO05D006230 4.4e-24 114.4 86 65.1
Potri.012G103400 Populus trichocarpa HOM05D005222 ORTHO05D006230 4.4e-24 114.4 86 65.1
Atru.chr6.1879 Acer truncatum HOM05D005222 ORTHO05D006230 7.5e-24 113.6 83 66.3
Nn3g16353 Nelumbo nucifera HOM05D005222 ORTHO05D006230 1.3e-23 112.8 86 64.0
Sp6g12920 Schrenkiella parvula HOM05D005222 ORTHO05D006230 1.3e-23 112.8 83 65.1
Dinv23190 Davidia involucrata HOM05D005222 ORTHO05D006230 1.7e-23 112.5 86 62.8
Nitab4.5_0000033g0050 Nicotiana tabacum HOM05D005222 ORTHO05D006230 1.7e-23 112.5 82 67.1
Peaxi162Scf00516g00032 Petunia axillaris HOM05D005222 ORTHO05D006230 2.2e-23 112.1 87 63.2
TWI39G0019 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 2.2e-23 112.1 86 64.0
Ca_16071_v3 Cicer arietinum L. HOM05D005222 ORTHO05D006230 2.8e-23 111.7 86 66.3
Glyma.04G198900 Glycine max HOM05D005222 ORTHO05D006230 2.8e-23 111.7 86 67.4
Lalb_Chr08g0237411 Lupinus albus HOM05D005222 ORTHO05D006230 2.8e-23 111.7 86 65.1
SalBow5G1462 Salvia bowleyana HOM05D005222 ORTHO05D006230 2.8e-23 111.7 82 64.6
CsaV3_1G000290 Cucumis sativus L. HOM05D005222 ORTHO05D006230 3.7e-23 111.3 83 65.1
MBI07_g24748_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 3.7e-23 111.3 71 70.4
Nitab4.5_0001464g0100 Nicotiana tabacum HOM05D005222 ORTHO05D006230 3.7e-23 111.3 86 60.5
Phvul.009G163100 Phaseolus vulgaris HOM05D005222 ORTHO05D006230 3.7e-23 111.3 86 67.4
Dinv11207 Davidia involucrata HOM05D005222 ORTHO05D006230 4.8e-23 110.9 86 61.6
Migut.D01295 Erythranthe guttata HOM05D005222 ORTHO05D006230 4.8e-23 110.9 82 63.4
Glyma.06G166600 Glycine max HOM05D005222 ORTHO05D006230 4.8e-23 110.9 71 74.6
Potri.015G102000 Populus trichocarpa HOM05D005222 ORTHO05D006230 4.8e-23 110.9 86 64.0
Rhsim08G0194200 Rhododendron simsii HOM05D005222 ORTHO05D006230 4.8e-23 110.9 84 61.9
TWI23G0048 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 4.8e-23 110.9 86 62.8
unitig_0.g1255 Utricularia gibba HOM05D005222 ORTHO05D006230 4.8e-23 110.9 82 64.6
Carub.0008s1080 Capsella rubella HOM05D005222 ORTHO05D006230 6.3e-23 110.5 83 62.7
ClCG06G018150 Citrullus lanatus HOM05D005222 ORTHO05D006230 6.3e-23 110.5 84 63.1
Hma1.2p1_0168F.1_g074260 Hydrangea macrophylla HOM05D005222 ORTHO05D006230 6.3e-23 110.5 86 59.3
QL05p049336 Quercus lobata HOM05D005222 ORTHO05D006230 6.3e-23 110.5 85 64.7
QL10p001732 Quercus lobata HOM05D005222 ORTHO05D006230 6.3e-23 110.5 85 64.7
GSVIVG01008600001 Vitis vinifera HOM05D005222 ORTHO05D006230 6.3e-23 110.5 71 69.0
Sabra15G0122200 Salix brachista HOM05D005222 ORTHO05D006230 8.3e-23 110.2 86 62.8
SEGI_36916 Sequoiadendron giganteum HOM05D005222 ORTHO05D006230 8.3e-23 110.2 84 63.1
Manes.14G047400 Manihot esculenta HOM05D005222 ORTHO05D006230 1.1e-22 109.8 86 61.6
AUR62029544 Chenopodium quinoa HOM05D005222 ORTHO05D006230 1.4e-22 109.4 79 65.8
AUR62034814 Chenopodium quinoa HOM05D005222 ORTHO05D006230 1.4e-22 109.4 79 65.8
Rhsim12G0178200 Rhododendron simsii HOM05D005222 ORTHO05D006230 1.4e-22 109.4 84 63.1
Actinidia25544 Actinidia chinensis HOM05D005222 ORTHO05D006230 1.8e-22 109.0 84 60.7
CAN.G758.13 Capsicum annuum HOM05D005222 ORTHO05D006230 1.8e-22 109.0 86 60.5
Thecc.03G136000 Theobroma cacao HOM05D005222 ORTHO05D006230 1.8e-22 109.0 86 62.8
Lj1g0004473 Lotus japonicus HOM05D005222 ORTHO05D006230 3.1e-22 108.2 86 62.8
PSO063G7191 Papaver somniferum HOM05D005222 ORTHO05D006230 3.1e-22 108.2 69 71.0
PSO782G1904 Papaver somniferum HOM05D005222 ORTHO05D006230 3.1e-22 108.2 69 71.0
Ciclev10033230m.g Citrus clementina HOM05D005222 ORTHO05D006230 4.1e-22 107.8 86 61.6
Manes.06G123800 Manihot esculenta HOM05D005222 ORTHO05D006230 4.1e-22 107.8 86 61.6
AT5G50810 Arabidopsis thaliana HOM05D005222 ORTHO05D006230 5.3e-22 107.5 83 61.4
Medtr3g098820 Medicago truncatula HOM05D005222 ORTHO05D006230 5.3e-22 107.5 86 64.0
CARHR232420 Cardamine hirsuta HOM05D005222 ORTHO05D006230 7.0e-22 107.1 85 62.4
CARHR257460 Cardamine hirsuta HOM05D005222 ORTHO05D006230 7.0e-22 107.1 83 61.4
CDE06G2816 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 7.0e-22 107.1 86 59.3
Sopen03g028390 Solanum pennellii HOM05D005222 ORTHO05D006230 7.0e-22 107.1 87 62.1
Gohir.A12G192500 Gossypium hirsutum HOM05D005222 ORTHO05D006230 9.1e-22 106.7 86 59.3
Gorai.008G209300 Gossypium raimondii HOM05D005222 ORTHO05D006230 9.1e-22 106.7 66 71.2
PGSC0003DMG400004338 Solanum tuberosum HOM05D005222 ORTHO05D006230 9.1e-22 106.7 87 62.1
CSS0000670 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 1.6e-21 105.9 61 75.4
CSS0012412 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 1.6e-21 105.9 61 75.4
CDE02G1328 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 1.6e-21 105.9 86 59.3
Lj4g0026334 Lotus japonicus HOM05D005222 ORTHO05D006230 1.6e-21 105.9 86 61.6
Nitab4.5_0011312g0030 Nicotiana tabacum HOM05D005222 ORTHO05D006230 1.6e-21 105.9 86 57.0
TAR629G0657 Trochodendron aralioides HOM05D005222 ORTHO05D006230 1.6e-21 105.9 64 73.4
Gohir.D12G194600 Gossypium hirsutum HOM05D005222 ORTHO05D006230 2.7e-21 105.1 86 58.1
Sabra12G0075900 Salix brachista HOM05D005222 ORTHO05D006230 2.7e-21 105.1 115 47.8
ATR0582G313 Amborella trichopoda HOM05D005222 ORTHO05D006230 3.5e-21 104.8 69 68.1
MELO3C026182.2 Cucumis melo HOM05D005222 ORTHO05D006230 3.5e-21 104.8 82 64.6
Duzib084G0042 Durio zibethinus HOM05D005222 ORTHO05D006230 3.5e-21 104.8 70 70.0
Duzib205G1725 Durio zibethinus HOM05D005222 ORTHO05D006230 4.5e-21 104.4 69 69.6
Zm00001eb036900 Zea mays HOM05D005222 ORTHO05D006230 4.5e-21 104.4 77 66.2
ClCG04G004850 Citrullus lanatus HOM05D005222 ORTHO05D006230 1.3e-20 102.8 61 75.4
Solyc03g097640.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 1.3e-20 102.8 83 61.4
TAR374G1676 Trochodendron aralioides HOM05D005222 ORTHO05D006230 1.3e-20 102.8 71 64.8
GSVIVG01033034001 Vitis vinifera HOM05D005222 ORTHO05D006230 1.3e-20 102.8 86 58.1
Zm00001eb175490 Zea mays HOM05D005222 ORTHO05D006230 1.3e-20 102.8 68 66.2
A03p16580 Brassica napus HOM05D005222 ORTHO05D006230 1.7e-20 102.4 82 61.0
C03p19510 Brassica napus HOM05D005222 ORTHO05D006230 1.7e-20 102.4 82 61.0
BolC3t14332H Brassica oleracea HOM05D005222 ORTHO05D006230 1.7e-20 102.4 82 61.0
BraA03t10945Z Brassica rapa HOM05D005222 ORTHO05D006230 1.7e-20 102.4 82 61.0
vmacro16739 Vaccinium macrocarpon HOM05D005222 ORTHO05D006230 1.7e-20 102.4 63 73.0
Cc04_g09830 Coffea canephora HOM05D005222 ORTHO05D006230 2.2e-20 102.1 71 66.2
VMungo0464G1435 Vigna mungo HOM05D005222 ORTHO05D006230 2.2e-20 102.1 58 81.0
CSS0034357 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 3.8e-20 101.3 73 61.6
Os08g0535600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 3.8e-20 101.3 61 72.1
Thhalv10015178m.g Eutrema salsugineum HOM05D005222 ORTHO05D006230 5.0e-20 100.9 83 60.2
TPR.G21582 Trifolium pratense HOM05D005222 ORTHO05D006230 6.5e-20 100.5 86 58.1
Mapoly0022s0111 Marchantia polymorpha HOM05D005222 ORTHO05D006230 8.5e-20 100.1 85 57.6
arahy.Tifrunner.gnm1.ann1.122S7D Arachis hypogaea HOM05D005222 ORTHO05D006230 1.1e-19 99.8 86 58.1
arahy.Tifrunner.gnm1.ann1.5QWD0G Arachis hypogaea HOM05D005222 ORTHO05D006230 1.5e-19 99.4 86 58.1
Pp3c22_9040 Physcomitrium patens HOM05D005222 ORTHO05D006230 1.5e-19 99.4 70 61.4
COL.COLO4_16662 Corchorus olitorius HOM05D005222 ORTHO05D006230 4.2e-19 97.8 57 77.2
BcaC09g50823 Brassica carinata HOM05D005222 ORTHO05D006230 2.1e-18 95.5 86 55.8
C01p20320 Brassica napus HOM05D005222 ORTHO05D006230 2.1e-18 95.5 86 55.8
BolC1t01961H Brassica oleracea HOM05D005222 ORTHO05D006230 2.1e-18 95.5 86 55.8
CAN.G101.22 Capsicum annuum HOM05D005222 ORTHO05D006230 2.1e-18 95.5 55 76.4
Glyma.05G202400 Glycine max HOM05D005222 ORTHO05D006230 3.6e-18 94.7 63 69.8
BcaNung03992 Brassica carinata HOM05D005222 ORTHO05D006230 4.7e-18 94.4 86 54.7
Sc07g0003580 Simmondsia chinensis HOM05D005222 ORTHO05D006230 8.0e-18 93.6 86 51.2
Pp3c18_15660 Physcomitrium patens HOM05D005222 ORTHO05D006230 1.0e-17 93.2 63 65.1
BraA01t01568Z Brassica rapa HOM05D005222 ORTHO05D006230 1.4e-17 92.8 86 53.5
ATR1096G067 Amborella trichopoda HOM05D005222 ORTHO05D006230 2.3e-17 92.0 62 62.9
Psat5g053520 Pisum sativum HOM05D001135 ORTHO05D006230 2.3e-17 92.0 53 75.5
AL8G24980 Arabidopsis lyrata HOM05D005222 ORTHO05D006230 3.0e-17 91.7 54 70.4
A01p16290 Brassica napus HOM05D005222 ORTHO05D006230 5.2e-17 90.9 86 52.3
Aqoxy5G03239 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 6.8e-17 90.5 66 57.6
C06p12810 Brassica napus HOM05D005222 ORTHO05D006230 8.8e-17 90.1 65 61.5
BcaC08g43896 Brassica carinata HOM05D005222 ORTHO05D006230 1.5e-16 89.4 65 61.5
MBI13_g38964_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 1.5e-16 89.4 65 60.0
SMO356G0192 Selaginella moellendorffii HOM05D005222 ORTHO05D006230 1.5e-16 89.4 59 62.7
Aqoxy3G01691 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 2.6e-16 88.6 63 60.3
Os12g0128600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 2.8e-15 85.1 80 51.2
Os11g0131700 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 6.3e-15 84.0 80 50.0
Zm00001eb163550 Zea mays HOM05D005222 ORTHO05D006230 8.3e-15 83.6 81 46.9
HPP92_001283 Vanilla planifolia HOM05D005222 ORTHO05D006230 7.0e-14 80.5 59 59.3
Nn7g37129 Nelumbo nucifera HOM05D005222 ORTHO05D006230 1.2e-13 79.7 59 55.9
FvH4_5g07110 Fragaria vesca HOM05D005222 ORTHO05D006230 1.7e-12 75.9 73 56.2
FAN08G2230 Fragaria x ananassa HOM05D005222 ORTHO05D006230 3.6e-10 68.2 73 50.7
PRCOL_00002805 Prasinoderma coloniale HOM05D003727 ORTHO05D034196 1.4e-09 66.2 85 41.2
MCO14G257 Micromonas commoda HOM05D005222 ORTHO05D006230 8.9e-09 63.5 68 45.6
AagrBONN_evm.TU.Sc2ySwM_362.856 Anthoceros agrestis HOM05D005222 ORTHO05D006230 1.4e-06 56.2 37 64.9


User provided reference genes

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