Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G1736 Fragaria x ananassa HOM05D006436 ORTHO05D008011 6.6e-67 257.7 178 100.0
FvH4_5g27560 Fragaria vesca HOM05D006436 ORTHO05D008011 1.8e-64 249.6 174 99.4
FAN08G3413 Fragaria x ananassa HOM05D006436 ORTHO05D008011 1.4e-61 240.0 174 74.7
RcHm_v2.0_Chr7g0218931 Rosa chinensis HOM05D006436 ORTHO05D008011 2.7e-60 235.7 174 92.5
FAN18G0548 Fragaria x ananassa HOM05D006436 ORTHO05D008011 7.3e-58 227.6 197 65.0
CSS0031788 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 2.2e-54 216.1 174 86.2
QL08p017466 Quercus lobata HOM05D006436 ORTHO05D008011 2.9e-54 215.7 174 78.2
Eucgr.J01642 Eucalyptus grandis HOM05D006436 ORTHO05D008011 6.4e-54 214.5 174 81.6
Manes.02G134600 Manihot esculenta HOM05D006436 ORTHO05D008011 6.4e-54 214.5 178 62.4
Prupe.3G143200 Prunus persica HOM05D006436 ORTHO05D008011 1.1e-53 213.8 175 87.4
LjContig00141g0009494 Lotus japonicus HOM05D006436 ORTHO05D008011 1.9e-53 213.0 174 82.2
CiPaw.03G076800 Carya illinoinensis HOM05D006436 ORTHO05D008011 3.2e-53 212.2 174 85.1
HanXRQChr10g0309911 Helianthus annuus HOM05D006436 ORTHO05D008011 5.4e-53 211.5 174 85.1
Potri.001G225300 Populus trichocarpa HOM05D006436 ORTHO05D008011 7.1e-53 211.1 175 84.0
PGR042G2272 Punica granatum HOM05D006436 ORTHO05D008011 7.1e-53 211.1 177 84.2
Rhsim11G0087100 Rhododendron simsii HOM05D006436 ORTHO05D008011 7.1e-53 211.1 173 86.7
Thecc.09G311900 Theobroma cacao HOM05D006436 ORTHO05D008011 9.3e-53 210.7 174 82.8
FvH4_5g26310 Fragaria vesca HOM05D006436 ORTHO05D008011 1.2e-52 210.3 179 65.9
Medtr5g077040 Medicago truncatula HOM05D006436 ORTHO05D008011 1.2e-52 210.3 176 82.4
Phvul.008G233200 Phaseolus vulgaris HOM05D006436 ORTHO05D008011 1.6e-52 209.9 174 81.0
Psat2g043120 Pisum sativum HOM05D006436 ORTHO05D008011 1.6e-52 209.9 174 82.2
THA.LOC104823829 Tarenaya hassleriana HOM05D006436 ORTHO05D008011 1.6e-52 209.9 174 82.8
Atru.chr1.2057 Acer truncatum HOM05D006436 ORTHO05D008011 2.1e-52 209.5 174 82.2
MBI18_g05914_MAGBIO Magnolia biondii HOM05D006436 ORTHO05D008011 2.1e-52 209.5 176 79.5
Hma1.2p1_0158F.1_g069740 Hydrangea macrophylla HOM05D006436 ORTHO05D008011 2.7e-52 209.1 174 85.6
MD09G1253300 Malus domestica HOM05D006436 ORTHO05D008011 2.7e-52 209.1 177 83.1
Ca_05765_v3 Cicer arietinum L. HOM05D006436 ORTHO05D008011 3.5e-52 208.8 174 79.9
Ciclev10022503m.g Citrus clementina HOM05D006436 ORTHO05D008011 3.5e-52 208.8 174 82.2
Gohir.D07G105500 Gossypium hirsutum HOM05D006436 ORTHO05D008011 4.6e-52 208.4 174 82.2
Gorai.001G113600 Gossypium raimondii HOM05D006436 ORTHO05D008011 4.6e-52 208.4 174 82.2
Cpa.g.sc178.16 Carica papaya HOM05D006436 ORTHO05D008011 6.0e-52 208.0 177 81.4
Peaxi162Scf00442g00063 Petunia axillaris HOM05D006436 ORTHO05D008011 6.0e-52 208.0 174 82.8
Ca_18506_v3 Cicer arietinum L. HOM05D006436 ORTHO05D008011 7.9e-52 207.6 174 79.3
arahy.Tifrunner.gnm1.ann1.1G92VG Arachis hypogaea HOM05D006436 ORTHO05D008011 2.3e-51 206.1 178 80.3
arahy.Tifrunner.gnm1.ann1.QIUU4Q Arachis hypogaea HOM05D006436 ORTHO05D008011 2.3e-51 206.1 174 79.9
arahy.Tifrunner.gnm1.ann1.RB24L7 Arachis hypogaea HOM05D006436 ORTHO05D008011 2.3e-51 206.1 174 79.9
TAR365G0111 Trochodendron aralioides HOM05D006436 ORTHO05D008011 2.3e-51 206.1 177 80.2
Lj4C253G7 Lonicera japonica HOM05D006436 ORTHO05D008011 3.0e-51 205.7 174 83.9
Nitab4.5_0005193g0010 Nicotiana tabacum HOM05D006436 ORTHO05D008011 3.0e-51 205.7 174 81.6
Cc07_g12850 Coffea canephora HOM05D006436 ORTHO05D008011 3.9e-51 205.3 174 82.8
Solyc04g014610.4 Solanum lycopersicum HOM05D006436 ORTHO05D008011 3.9e-51 205.3 174 82.2
Sopen04g006750 Solanum pennellii HOM05D006436 ORTHO05D008011 3.9e-51 205.3 174 82.2
GSVIVG01035239001 Vitis vinifera HOM05D006436 ORTHO05D008011 3.9e-51 205.3 174 83.9
ECA234G4304 Erigeron canadensis HOM05D006436 ORTHO05D008011 5.1e-51 204.9 174 77.0
Gohir.A07G101500 Gossypium hirsutum HOM05D006436 ORTHO05D008011 5.1e-51 204.9 174 81.6
Lalb_Chr16g0392121 Lupinus albus HOM05D006436 ORTHO05D008011 5.1e-51 204.9 178 79.2
arahy.Tifrunner.gnm1.ann1.7TMM1B Arachis hypogaea HOM05D006436 ORTHO05D008011 8.7e-51 204.1 174 76.4
Glyma.14G210900 Glycine max HOM05D006436 ORTHO05D008011 8.7e-51 204.1 174 79.3
Sed0003659 Sechium edule HOM05D006436 ORTHO05D008011 8.7e-51 204.1 174 83.9
VMungo0647G0400 Vigna mungo HOM05D006436 ORTHO05D008011 8.7e-51 204.1 174 79.9
PGSC0003DMG400024110 Solanum tuberosum HOM05D006436 ORTHO05D008011 1.1e-50 203.8 174 81.6
Sopen04g027290 Solanum pennellii HOM05D006436 ORTHO05D008011 4.3e-50 201.8 174 81.0
CAN.G268.8 Capsicum annuum HOM05D006436 ORTHO05D008011 5.6e-50 201.4 174 81.0
Thhalv10027956m.g Eutrema salsugineum HOM05D006436 ORTHO05D008011 5.6e-50 201.4 176 82.4
AT5G37290 Arabidopsis thaliana HOM05D006436 ORTHO05D008011 7.4e-50 201.1 176 77.8
Solyc04g071330.4 Solanum lycopersicum HOM05D006436 ORTHO05D008011 1.6e-49 199.9 174 80.5
MELO3C025074.2 Cucumis melo HOM05D006436 ORTHO05D008011 2.1e-49 199.5 174 82.2
Oeu012529.1 Olea europaea HOM05D006436 ORTHO05D008011 2.1e-49 199.5 174 82.2
vmacro01486 Vaccinium macrocarpon HOM05D006436 ORTHO05D008011 2.1e-49 199.5 174 82.8
CsaV3_5G020600 Cucumis sativus L. HOM05D006436 ORTHO05D008011 1.1e-48 197.2 174 81.0
Lsat_1_v5_gn_5_79100 Lactuca sativa HOM05D006436 ORTHO05D008011 1.1e-48 197.2 177 79.7
Aqoxy7G01157 Aquilegia oxysepala HOM05D006436 ORTHO05D008011 2.4e-48 196.1 174 77.0
CARHR215800 Cardamine hirsuta HOM05D006436 ORTHO05D008011 3.1e-48 195.7 176 79.5
Dinv19074 Davidia involucrata HOM05D006436 ORTHO05D008011 5.3e-48 194.9 174 81.0
FAN13G2473 Fragaria x ananassa HOM05D006436 ORTHO05D008011 5.3e-48 194.9 170 64.7
AL7G45650 Arabidopsis lyrata HOM05D006436 ORTHO05D008011 6.9e-48 194.5 176 80.7
Sp1g30670 Schrenkiella parvula HOM05D006436 ORTHO05D008011 6.9e-48 194.5 176 80.1
Carub.0007s3240 Capsella rubella HOM05D006436 ORTHO05D008011 9.0e-48 194.1 176 77.8
Carub.0007s3243 Capsella rubella HOM05D006436 ORTHO05D008011 1.5e-47 193.4 176 77.3
HPP92_004857 Vanilla planifolia HOM05D006436 ORTHO05D008011 2.6e-47 192.6 174 80.5
CANSAT80G1957 Cannabis sativa HOM05D006436 ORTHO05D008011 4.5e-47 191.8 176 77.3
TWI77G0906 Tripterygium wilfordii HOM05D006436 ORTHO05D008011 4.5e-47 191.8 177 71.8
Oeu039710.1 Olea europaea HOM05D006436 ORTHO05D008011 1.3e-46 190.3 174 79.9
Cfa007759 Carpinus fangiana HOM05D006436 ORTHO05D008011 2.9e-46 189.1 174 57.5
ATR0706G244 Amborella trichopoda HOM05D006436 ORTHO05D008011 1.1e-45 187.2 176 77.8
BcaB03g13643 Brassica carinata HOM05D006436 ORTHO05D008011 3.2e-45 185.7 176 76.7
Os11g0546200 Oryza sativa ssp. japonica HOM05D006436 ORTHO05D008011 5.5e-45 184.9 174 75.9
Zm00001eb188680 Zea mays HOM05D006436 ORTHO05D008011 5.5e-45 184.9 174 77.6
BcaC01g04932 Brassica carinata HOM05D006436 ORTHO05D008011 4.6e-44 181.8 175 76.0
BraA03t11880Z Brassica rapa HOM05D006436 ORTHO05D008011 7.9e-44 181.0 176 54.5
Sabra16G0133900 Salix brachista HOM05D006436 ORTHO05D008011 3.0e-43 179.1 248 42.7
COL.COLO4_18608 Corchorus olitorius HOM05D006436 ORTHO05D008011 3.9e-43 178.7 160 82.5
C03p31970 Brassica napus HOM05D006436 ORTHO05D008011 8.7e-43 177.6 176 53.4
BolC3t15539H Brassica oleracea HOM05D006436 ORTHO05D008011 8.7e-43 177.6 176 53.4
Sc15g0000210 Simmondsia chinensis HOM05D006436 ORTHO05D008011 5.6e-42 174.9 175 52.0
MSTRG.12143 Avicennia marina HOM05D006436 ORTHO05D008011 7.4e-42 174.5 174 75.9
PSO063G3804 Papaver somniferum HOM05D006436 ORTHO05D008011 2.8e-41 172.6 173 72.8
Migut.A01047 Erythranthe guttata HOM05D006436 ORTHO05D008011 1.8e-40 169.9 174 73.0
unitig_61.g26181 Utricularia gibba HOM05D006436 ORTHO05D008011 1.8e-40 169.9 191 47.1
Dinv28234 Davidia involucrata HOM05D006436 ORTHO05D008011 6.9e-40 167.9 145 86.9
Aa31LG5G11620 Aethionema arabicum HOM05D006436 ORTHO05D008011 7.6e-39 164.5 192 70.3
SMO347G0032 Selaginella moellendorffii HOM05D006436 ORTHO05D008011 1.0e-38 164.1 174 47.1
Hund24464 Selenicereus undatus HOM05D006436 ORTHO05D008011 1.1e-37 160.6 175 46.9
SGA_v2.0_scaffold24G10269 Striga asiatica HOM05D006436 ORTHO05D008011 2.5e-37 159.5 204 58.3
Mapoly0028s0068 Marchantia polymorpha HOM05D006436 ORTHO05D008011 1.2e-36 157.1 174 47.1
Cc00_g04020 Coffea canephora HOM05D006436 ORTHO05D008011 3.5e-36 155.6 173 50.9
SEGI_01802 Sequoiadendron giganteum HOM05D006436 ORTHO05D008011 7.9e-36 154.5 151 50.3
DCAR_006063 Daucus carota HOM05D006436 ORTHO05D008011 3.9e-35 152.1 138 81.9
ClCG01G008580 Citrullus lanatus HOM05D006436 ORTHO05D008011 1.9e-34 149.8 138 83.3
EL10Ac5g11211 Beta vulgaris HOM05D006436 ORTHO05D008011 3.3e-34 149.1 177 65.5
Duzib168G0581 Durio zibethinus HOM05D006436 ORTHO05D008011 3.3e-34 149.1 86 82.6
CDE11G1230 Ceratophyllum demersum HOM05D006436 ORTHO05D008011 1.6e-33 146.7 138 70.3
Nitab4.5_0012165g0010 Nicotiana tabacum HOM05D006436 ORTHO05D008011 2.8e-33 146.0 138 81.9
Nitab4.5_0000574g0240 Nicotiana tabacum HOM05D006436 ORTHO05D008011 3.7e-33 145.6 84 78.6
PGSC0003DMG400023565 Solanum tuberosum HOM05D006436 ORTHO05D008011 3.7e-33 145.6 174 47.1
SalBow6G7138 Salvia bowleyana HOM05D006436 ORTHO05D008011 8.2e-33 144.4 174 67.2
Ah.14g085550 Amaranthus hybridus HOM05D000477 ORTHO05D000338 1.0e-30 137.5 87 74.7
AUR62026125 Chenopodium quinoa HOM05D003339 ORTHO05D003847 1.3e-30 137.1 154 74.0
AUR62028451 Chenopodium quinoa HOM05D003339 ORTHO05D003847 3.8e-30 135.6 153 73.9
AUR62026126 Chenopodium quinoa HOM05D006436 ORTHO05D008011 5.0e-30 135.2 154 73.4
CSS0035006 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 5.5e-29 131.7 123 74.8
AUR62028452 Chenopodium quinoa HOM05D006436 ORTHO05D008011 1.2e-28 130.6 87 73.6
Haze_14313 Corylus avellana HOM05D006436 ORTHO05D008011 3.7e-25 119.0 119 52.9
AagrBONN_evm.TU.Sc2ySwM_368.3316 Anthoceros agrestis HOM05D006436 ORTHO05D008011 3.1e-24 115.9 86 62.8
arahy.Tifrunner.gnm1.ann1.8KE236 Arachis hypogaea HOM05D006436 ORTHO05D008011 9.1e-24 114.4 213 36.6
Nn4g25693 Nelumbo nucifera HOM05D006436 ORTHO05D008011 7.2e-21 104.8 121 46.3
Thhalv10028339m.g Eutrema salsugineum HOM05D006436 ORTHO05D008011 1.2e-20 104.0 128 44.5
CSS0025543 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 2.7e-20 102.8 165 37.6
CBR_g12236 Chara braunii HOM05D006436 ORTHO05D008011 5.9e-15 85.1 114 37.7
CsaV3_1G031100 Cucumis sativus L. HOM05D006436 ORTHO05D008011 2.3e-11 73.2 47 72.3
Thecc.05G304200 Theobroma cacao HOM05D006436 ORTHO05D008011 3.9e-11 72.4 98 40.8
CAN.G935.5 Capsicum annuum HOM05D006436 ORTHO05D008011 3.5e-07 59.3 36 75.0
QL03p022571 Quercus lobata HOM05D006436 ORTHO05D008011 3.5e-07 59.3 36 75.0
Nitab4.5_0011078g0020 Nicotiana tabacum HOM05D006436 ORTHO05D008011 1.7e-06 57.0 36 72.2
RcHm_v2.0_Chr4g0394581 Rosa chinensis HOM05D004344 ORTHO05D006026 3.8e-06 55.8 42 64.3


User provided reference genes

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