Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g25840 Fragaria vesca HOM05D006738 ORTHO05D008191 2.4e-75 285.4 142 100.0
FAN18G1689 Fragaria x ananassa HOM05D006738 ORTHO05D008191 2.4e-75 285.4 142 100.0
FAN04G1736 Fragaria x ananassa HOM05D006738 ORTHO05D008191 2.0e-74 282.3 142 99.3
FAN08G0599 Fragaria x ananassa HOM05D006738 ORTHO05D008191 2.6e-74 282.0 142 99.3
RcHm_v2.0_Chr7g0216321 Rosa chinensis HOM05D006738 ORTHO05D008191 5.1e-62 241.1 144 87.5
QL09p002987 Quercus lobata HOM05D006738 ORTHO05D008191 2.5e-53 212.2 144 76.4
Solyc06g064810.3 Solanum lycopersicum HOM05D006738 ORTHO05D008191 2.0e-50 202.6 142 73.9
Sopen06g023320 Solanum pennellii HOM05D006738 ORTHO05D008191 2.0e-50 202.6 142 73.9
PGSC0003DMG400005175 Solanum tuberosum HOM05D006738 ORTHO05D008191 2.0e-50 202.6 142 73.9
ECA234G1792 Erigeron canadensis HOM05D006738 ORTHO05D008191 2.9e-49 198.7 142 71.1
Aqoxy6G00074 Aquilegia oxysepala HOM05D006738 ORTHO05D008191 5.0e-49 198.0 143 69.2
Nitab4.5_0006564g0050 Nicotiana tabacum HOM05D006738 ORTHO05D008191 6.5e-49 197.6 142 72.5
Migut.C01346 Erythranthe guttata HOM05D006738 ORTHO05D008191 8.5e-49 197.2 142 71.1
AT1G33810 Arabidopsis thaliana HOM05D006738 ORTHO05D008191 1.4e-48 196.4 138 71.7
AL1G48260 Arabidopsis lyrata HOM05D006738 ORTHO05D008191 1.9e-48 196.1 138 69.6
unitig_748.g7730 Utricularia gibba HOM05D000331 ORTHO05D003399 2.5e-48 195.7 137 70.8
arahy.Tifrunner.gnm1.ann1.WI646Q Arachis hypogaea HOM05D006738 ORTHO05D008191 7.2e-48 194.1 140 70.0
DCAR_002119 Daucus carota HOM05D006738 ORTHO05D008191 2.1e-47 192.6 142 69.7
Lsat_1_v5_gn_5_78501 Lactuca sativa HOM05D006738 ORTHO05D008191 2.7e-47 192.2 140 71.4
CSS0018644 Camellia sinensis var. sinensis HOM05D006738 ORTHO05D008191 6.1e-47 191.0 145 71.7
CSS0019392 Camellia sinensis var. sinensis HOM05D006738 ORTHO05D008191 6.1e-47 191.0 145 71.7
arahy.Tifrunner.gnm1.ann1.67ZQRX Arachis hypogaea HOM05D006738 ORTHO05D008191 3.0e-46 188.7 140 69.3
BraA09t38801Z Brassica rapa HOM05D006738 ORTHO05D008191 5.1e-46 188.0 138 68.1
A09p32610 Brassica napus HOM05D006738 ORTHO05D008191 1.5e-45 186.4 138 67.4
C06p12150 Brassica napus HOM05D006738 ORTHO05D008191 1.5e-45 186.4 138 70.3
BolC6t36356H Brassica oleracea HOM05D006738 ORTHO05D008191 1.5e-45 186.4 138 70.3
Sc20g0004710 Simmondsia chinensis HOM05D006738 ORTHO05D008191 1.5e-45 186.4 142 67.6
BcaC08g43833 Brassica carinata HOM05D006738 ORTHO05D008191 3.3e-45 185.3 138 70.3
arahy.Tifrunner.gnm1.ann1.H480WY Arachis hypogaea HOM05D006738 ORTHO05D008191 1.3e-44 183.3 136 68.4
VMungo1215G3331 Vigna mungo HOM05D006738 ORTHO05D008191 1.7e-44 183.0 140 68.6
QL09p004200 Quercus lobata HOM05D006738 ORTHO05D008191 2.8e-44 182.2 144 67.4
QL09p004074 Quercus lobata HOM05D006738 ORTHO05D008191 8.2e-44 180.6 144 66.7
CANSAT11G1518 Cannabis sativa HOM05D006738 ORTHO05D008191 1.1e-43 180.3 142 67.6
EL10Ac9g22957 Beta vulgaris HOM05D006738 ORTHO05D008191 1.8e-43 179.5 143 66.4
Haze_13918 Corylus avellana HOM05D006738 ORTHO05D008191 1.8e-43 179.5 148 68.2
CsaV3_5G040220 Cucumis sativus L. HOM05D006738 ORTHO05D008191 1.2e-42 176.8 138 68.8
MD15G1400100 Malus domestica HOM05D006738 ORTHO05D008191 3.4e-42 175.3 142 65.5
Prupe.1G547300 Prunus persica HOM05D006738 ORTHO05D008191 3.4e-42 175.3 142 66.2
Lj3g0020973 Lotus japonicus HOM05D006738 ORTHO05D008191 7.7e-42 174.1 140 66.4
FAN13G2380 Fragaria x ananassa HOM05D006738 ORTHO05D008191 1.0e-41 173.7 140 68.6
Potri.019G076400 Populus trichocarpa HOM05D006738 ORTHO05D008191 1.3e-41 173.3 142 64.1
CiPaw.04G011300 Carya illinoinensis HOM05D006738 ORTHO05D008191 2.9e-41 172.2 143 65.0
SGA_v2.0_scaffold24G10619 Striga asiatica HOM05D006738 ORTHO05D008191 5.0e-41 171.4 140 62.9
Sabra19G0086800 Salix brachista HOM05D006738 ORTHO05D008191 1.1e-40 170.2 142 62.7
MD08G1215600 Malus domestica HOM05D006738 ORTHO05D008191 1.4e-40 169.9 142 64.1
Oeu048220.2 Olea europaea HOM05D006738 ORTHO05D008191 2.5e-40 169.1 142 64.8
Sed0003815 Sechium edule HOM05D006738 ORTHO05D008191 3.2e-40 168.7 138 62.3
Atru.chr12.822 Acer truncatum HOM05D006738 ORTHO05D008191 4.2e-40 168.3 142 60.6
Cpa.g.sc21.54 Carica papaya HOM05D006738 ORTHO05D008191 4.2e-40 168.3 138 65.2
Duzib211G0443 Durio zibethinus HOM05D006738 ORTHO05D008191 5.5e-40 167.9 142 60.6
PGR042G2463 Punica granatum HOM05D006738 ORTHO05D008191 5.5e-40 167.9 142 64.1
Thecc.08G171800 Theobroma cacao HOM05D006738 ORTHO05D008191 5.5e-40 167.9 142 62.7
CiPaw.03G017200 Carya illinoinensis HOM05D006738 ORTHO05D008191 2.1e-39 166.0 143 62.2
COL.COLO4_24620 Corchorus olitorius HOM05D006738 ORTHO05D008191 2.1e-39 166.0 142 62.0
Eucgr.F02960 Eucalyptus grandis HOM05D006738 ORTHO05D008191 2.1e-39 166.0 142 62.0
MELO3C022198.2 Cucumis melo HOM05D006738 ORTHO05D008191 3.6e-39 165.2 138 65.2
Cc10_g09240 Coffea canephora HOM05D006738 ORTHO05D008191 6.1e-39 164.5 141 62.4
Gohir.A05G252100 Gossypium hirsutum HOM05D006738 ORTHO05D008191 6.1e-39 164.5 142 62.7
QL09p000479 Quercus lobata HOM05D006738 ORTHO05D008191 1.0e-38 163.7 120 71.7
Gohir.D05G253900 Gossypium hirsutum HOM05D006738 ORTHO05D008191 1.4e-38 163.3 142 62.0
Ah.01g012440 Amaranthus hybridus HOM05D006738 ORTHO05D008191 1.8e-38 162.9 142 65.5
CDE05G2754 Ceratophyllum demersum HOM05D006738 ORTHO05D008191 2.3e-38 162.5 138 63.8
TPR.G34128 Trifolium pratense HOM05D006738 ORTHO05D008191 2.3e-38 162.5 142 62.7
TWI14G1101 Tripterygium wilfordii HOM05D006738 ORTHO05D008191 2.3e-38 162.5 141 60.3
Ciclev10022763m.g Citrus clementina HOM05D006738 ORTHO05D008191 3.0e-38 162.2 143 60.8
Glyma.01G010600 Glycine max HOM05D006738 ORTHO05D008191 3.9e-38 161.8 140 62.9
Lj2A790G37 Lonicera japonica HOM05D006738 ORTHO05D008191 3.9e-38 161.8 116 73.3
THA.LOC104815902 Tarenaya hassleriana HOM05D006738 ORTHO05D008191 3.9e-38 161.8 138 62.3
Manes.02G195900 Manihot esculenta HOM05D006738 ORTHO05D008191 5.2e-38 161.4 145 59.3
GSVIVG01025906001 Vitis vinifera HOM05D006738 ORTHO05D008191 5.2e-38 161.4 145 60.0
Dinv41794 Davidia involucrata HOM05D006738 ORTHO05D008191 6.7e-38 161.0 145 60.7
Aa31LG6G8130 Aethionema arabicum HOM05D000065 ORTHO05D000162 8.8e-38 160.6 135 63.7
Peaxi162Scf00269g01621 Petunia axillaris HOM05D006738 ORTHO05D008191 8.8e-38 160.6 142 60.6
Carub.0001s3198 Capsella rubella HOM05D006738 ORTHO05D008191 2.6e-37 159.1 138 59.4
CARHR033210 Cardamine hirsuta HOM05D006738 ORTHO05D008191 2.6e-37 159.1 138 61.6
Medtr4g031650 Medicago truncatula HOM05D006738 ORTHO05D008191 1.3e-36 156.8 142 60.6
PSO170G3684 Papaver somniferum HOM05D006738 ORTHO05D008191 1.7e-36 156.4 140 57.1
AUR62032974 Chenopodium quinoa HOM05D006738 ORTHO05D008191 2.2e-36 156.0 145 58.6
Phvul.002G133500 Phaseolus vulgaris HOM05D006738 ORTHO05D008191 3.7e-36 155.2 140 60.0
Psat0s2394g0120 Pisum sativum HOM05D006738 ORTHO05D008191 3.7e-36 155.2 140 61.4
HPP92_002035 Vanilla planifolia HOM05D006738 ORTHO05D008191 6.3e-36 154.5 138 60.9
BcaB07g33015 Brassica carinata HOM05D006738 ORTHO05D008191 8.2e-36 154.1 138 60.9
Thhalv10009075m.g Eutrema salsugineum HOM05D006738 ORTHO05D008191 8.2e-36 154.1 138 61.6
Nn5g27492 Nelumbo nucifera HOM05D006738 ORTHO05D008191 8.2e-36 154.1 140 60.7
AUR62017706 Chenopodium quinoa HOM05D006738 ORTHO05D008191 1.4e-35 153.3 139 59.7
Sp1g29140 Schrenkiella parvula HOM05D006738 ORTHO05D008191 1.4e-35 153.3 138 60.9
PSO782G5196 Papaver somniferum HOM05D006738 ORTHO05D008191 1.8e-35 152.9 140 57.9
QL09p000618 Quercus lobata HOM05D006738 ORTHO05D008191 9.1e-35 150.6 113 69.9
Os08g0112600 Oryza sativa ssp. japonica HOM05D006738 ORTHO05D008191 4.5e-34 148.3 147 55.8
QL09p000342 Quercus lobata HOM05D006738 ORTHO05D008191 4.5e-34 148.3 148 59.5
Rhsim07G0068100 Rhododendron simsii HOM05D006738 ORTHO05D008191 2.9e-33 145.6 154 51.9
Lalb_Chr01g0000011 Lupinus albus HOM05D006738 ORTHO05D008191 2.5e-32 142.5 138 58.0
Cfa008114 Carpinus fangiana HOM05D006738 ORTHO05D008191 3.6e-31 138.7 142 57.0
ATR1089G071 Amborella trichopoda HOM05D006738 ORTHO05D008191 6.1e-31 137.9 138 54.3
CiPaw.09G026000 Carya illinoinensis HOM05D006738 ORTHO05D008191 1.4e-27 126.7 143 51.0
Gorai.009G265500 Gossypium raimondii HOM05D006738 ORTHO05D008191 1.7e-25 119.8 117 57.3
Cc10_g16410 Coffea canephora HOM05D006738 ORTHO05D008191 2.9e-25 119.0 77 74.0
vmacro13762 Vaccinium macrocarpon HOM05D006738 ORTHO05D008191 5.0e-25 118.2 134 50.7
MBI03_g14516_MAGBIO Magnolia biondii HOM05D006738 ORTHO05D008191 8.5e-25 117.5 100 63.0
AagrBONN_evm.TU.Sc2ySwM_228.5134 Anthoceros agrestis HOM05D006738 ORTHO05D008191 7.2e-24 114.4 129 42.6
QL09p003020 Quercus lobata HOM05D006738 ORTHO05D008191 2.7e-23 112.5 70 80.0
Actinidia29399 Actinidia chinensis HOM05D006738 ORTHO05D008191 3.6e-23 112.1 114 55.3
SMO118G0306 Selaginella moellendorffii HOM05D006738 ORTHO05D008191 3.6e-23 112.1 140 45.0
Mapoly0047s0047 Marchantia polymorpha HOM05D006738 ORTHO05D008191 8.0e-23 110.9 119 45.4
Pp3c3_5650 Physcomitrium patens HOM05D006738 ORTHO05D008191 8.8e-22 107.5 131 44.3
ClCG08G000640 Citrullus lanatus HOM05D006738 ORTHO05D008191 3.4e-21 105.5 99 59.6
SEGI_33861 Sequoiadendron giganteum HOM05D006738 ORTHO05D008191 1.3e-20 103.6 119 47.1
Zm00001eb236960 Zea mays HOM05D002538 ORTHO05D008191 2.4e-19 99.4 114 50.0
CiPaw.16G110800 Carya illinoinensis HOM05D006738 ORTHO05D008191 7.2e-16 87.8 56 71.4
Zm00001eb260580 Zea mays HOM05D006738 ORTHO05D008191 2.8e-15 85.9 122 43.4
Oeu017736.2 Olea europaea HOM05D006738 ORTHO05D008191 4.7e-15 85.1 91 53.8
Hma1.2p1_0935F.1_g238700 Hydrangea macrophylla HOM05D006738 ORTHO05D008191 1.0e-14 84.0 42 92.9
HanXRQChr10g0309751 Helianthus annuus HOM05D006738 ORTHO05D008191 1.2e-13 80.5 81 60.5
Medtr4g031845 Medicago truncatula HOM05D006738 ORTHO05D008191 1.8e-11 73.2 71 59.2
SHI08988 Sapria himalayana HOM05D006738 ORTHO05D008191 9.2e-11 70.9 79 50.6
PRCOL_00001928 Prasinoderma coloniale HOM05D006738 ORTHO05D008191 2.7e-10 69.3 132 33.3
Glyma.09G210500 Glycine max HOM05D006738 ORTHO05D008191 2.9e-09 65.9 105 41.0
Hma1.2p1_0935F.1_g238670 Hydrangea macrophylla HOM05D006738 ORTHO05D008191 5.2e-06 55.1 46 60.9


User provided reference genes

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