Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G1528 Fragaria x ananassa HOM05D005107 ORTHO05D006200 4.3e-178 627.9 316 100.0
FvH4_5g05630 Fragaria vesca HOM05D005107 ORTHO05D006200 7.1e-173 610.5 340 92.4
FAN04G1011 Fragaria x ananassa HOM05D005107 ORTHO05D006200 1.6e-172 609.4 316 97.2
FAN08G1807 Fragaria x ananassa HOM05D005107 ORTHO05D006200 2.4e-168 595.5 317 95.3
FAN18G1595 Fragaria x ananassa HOM05D005107 ORTHO05D008464 8.2e-161 570.5 291 99.0
FAN13G2858 Fragaria x ananassa HOM05D005107 ORTHO05D008464 2.7e-156 555.4 291 95.9
RcHm_v2.0_Chr7g0193181 Rosa chinensis HOM05D005107 ORTHO05D006200 7.9e-156 553.9 350 80.9
Prupe.5G170500 Prunus persica HOM05D005107 ORTHO05D006200 2.0e-146 522.7 340 78.5
MD14G1176600 Malus domestica HOM05D005107 ORTHO05D006200 1.5e-141 506.5 340 74.4
MD06G1170900 Malus domestica HOM05D005107 ORTHO05D006200 4.8e-137 491.5 339 74.0
QL10p008945 Quercus lobata HOM05D005107 ORTHO05D006200 4.9e-121 438.3 342 65.2
CiPaw.11G023500 Carya illinoinensis HOM05D005107 ORTHO05D006200 2.9e-113 412.5 341 64.5
Haze_07542 Corylus avellana HOM05D005107 ORTHO05D006200 7.8e-111 404.4 286 69.2
Dinv20630 Davidia involucrata HOM05D005107 ORTHO05D006200 1.3e-110 403.7 344 63.1
GSVIVG01007704001 Vitis vinifera HOM05D005107 ORTHO05D006200 1.7e-110 403.3 344 61.3
Cpa.g.sc153.5 Carica papaya HOM05D005107 ORTHO05D006200 1.8e-107 393.3 344 59.0
CANSAT80G2623 Cannabis sativa HOM05D005107 ORTHO05D006200 2.0e-106 389.8 341 58.7
Potri.015G079700 Populus trichocarpa HOM05D005107 ORTHO05D006200 3.7e-105 385.6 344 59.6
Atru.chr9.2518 Acer truncatum HOM05D005107 ORTHO05D006200 1.4e-104 383.6 345 58.8
Potri.012G088600 Populus trichocarpa HOM05D005107 ORTHO05D006200 2.1e-103 379.8 343 57.4
TAR374G1030 Trochodendron aralioides HOM05D005107 ORTHO05D006200 3.5e-103 379.0 343 56.9
Sabra12G0063800 Salix brachista HOM05D005107 ORTHO05D006200 5.1e-102 375.2 343 57.7
COL.COLO4_30099 Corchorus olitorius HOM05D005107 ORTHO05D006200 6.6e-102 374.8 344 57.0
Sabra15G0104000 Salix brachista HOM05D005107 ORTHO05D006200 1.2e-100 370.5 355 57.2
CSS0000196 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 8.1e-100 367.9 344 59.3
Hma1.2p1_0046F.1_g026720 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 1.2e-98 364.0 344 57.3
Eucgr.B00249 Eucalyptus grandis HOM05D005107 ORTHO05D006200 2.0e-98 363.2 340 55.9
Hma1.2p1_0592F.1_g185565 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 5.8e-98 361.7 344 57.0
Gohir.A12G272600 Gossypium hirsutum HOM05D005107 ORTHO05D006200 1.7e-97 360.1 344 54.4
Duzib205G0074 Durio zibethinus HOM05D005107 ORTHO05D006200 3.7e-97 359.0 336 54.5
Gohir.D12G273300 Gossypium hirsutum HOM05D005107 ORTHO05D006200 3.7e-97 359.0 344 54.7
Gorai.008G293700 Gossypium raimondii HOM05D005107 ORTHO05D006200 4.9e-97 358.6 344 54.4
Lj4g0022030 Lotus japonicus HOM05D005107 ORTHO05D006200 1.9e-96 356.7 340 55.3
Thecc.03G018700 Theobroma cacao HOM05D005107 ORTHO05D006200 3.2e-96 355.9 305 59.7
Ciclev10021009m.g Citrus clementina HOM05D005107 ORTHO05D006200 4.1e-96 355.5 346 56.4
TWI23G1004 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 4.1e-96 355.5 344 54.9
Gorai.001G071700 Gossypium raimondii HOM05D005107 ORTHO05D006200 2.1e-95 353.2 343 50.4
ClCG01G013290 Citrullus lanatus HOM05D005107 ORTHO05D006200 3.5e-95 352.4 341 55.7
TAR622G1391 Trochodendron aralioides HOM05D005107 ORTHO05D006200 6.0e-95 351.7 343 55.7
Gohir.D07G068200 Gossypium hirsutum HOM05D005107 ORTHO05D006200 1.3e-94 350.5 343 50.4
CSS0028022 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 3.0e-94 349.4 337 57.3
CSS0014290 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 1.9e-93 346.7 343 56.3
Sed0009116 Sechium edule HOM05D005107 ORTHO05D006200 1.6e-92 343.6 341 55.4
PGSC0003DMG401018164 Solanum tuberosum HOM05D005107 ORTHO05D006200 3.6e-92 342.4 343 55.1
Glyma.06G180400 Glycine max HOM05D005107 ORTHO05D006200 4.0e-91 339.0 340 54.4
Gohir.A07G063500 Gossypium hirsutum HOM05D005107 ORTHO05D006200 4.0e-91 339.0 343 49.3
MELO3C002281.2 Cucumis melo HOM05D005107 ORTHO05D006200 1.2e-90 337.4 343 51.9
Lalb_Chr08g0236621 Lupinus albus HOM05D005107 ORTHO05D006200 1.2e-90 337.4 340 52.6
Glyma.04G185700 Glycine max HOM05D005107 ORTHO05D006200 4.4e-90 335.5 340 52.9
Manes.06G107100 Manihot esculenta HOM05D005107 ORTHO05D006200 4.4e-90 335.5 345 53.6
Migut.O00123 Erythranthe guttata HOM05D005107 ORTHO05D006200 9.9e-90 334.3 341 53.1
Lj1g0017341 Lotus japonicus HOM05D005107 ORTHO05D006200 9.9e-90 334.3 341 54.5
Sopen03g031750 Solanum pennellii HOM05D005107 ORTHO05D006200 1.3e-89 334.0 343 54.2
VMungo1309G0437 Vigna mungo HOM05D005107 ORTHO05D006200 1.3e-89 334.0 340 52.4
Phvul.009G176100 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 2.9e-89 332.8 340 52.4
arahy.Tifrunner.gnm1.ann1.5AH6W7 Arachis hypogaea HOM05D005107 ORTHO05D006200 1.9e-88 330.1 340 50.9
Nitab4.5_0001207g0070 Nicotiana tabacum HOM05D005107 ORTHO05D006200 1.9e-88 330.1 343 54.2
arahy.Tifrunner.gnm1.ann1.6379ZA Arachis hypogaea HOM05D005107 ORTHO05D006200 3.2e-88 329.3 340 51.2
PGR083G1692 Punica granatum HOM05D005107 ORTHO05D006200 3.2e-88 329.3 347 52.2
TWI14G0467 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 1.2e-87 327.4 344 52.3
Ca_21938_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 2.1e-87 326.6 340 52.1
AL8G40070 Arabidopsis lyrata HOM05D005107 ORTHO05D006200 2.7e-87 326.2 346 51.2
Phvul.003G202200 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 3.5e-87 325.9 336 53.6
CAN.G1166.21 Capsicum annuum HOM05D005107 ORTHO05D006200 4.6e-87 325.5 343 51.6
Aqoxy3G02846 Aquilegia oxysepala HOM05D005107 ORTHO05D006200 6.0e-87 325.1 339 51.3
Solyc03g112670.3 Solanum lycopersicum HOM05D005107 ORTHO05D006200 6.0e-87 325.1 343 53.4
Sed0010155 Sechium edule HOM05D005107 ORTHO05D006200 1.0e-86 324.3 338 53.6
VMungo1215G1987 Vigna mungo HOM05D005107 ORTHO05D006200 1.0e-86 324.3 336 52.4
Nn2g12593 Nelumbo nucifera HOM05D005107 ORTHO05D006200 2.3e-86 323.2 343 51.3
Nn4g22685 Nelumbo nucifera HOM05D005107 ORTHO05D006200 8.7e-86 321.2 343 53.1
Nn4g22690 Nelumbo nucifera HOM05D005107 ORTHO05D006200 8.7e-86 321.2 343 53.1
TPR.G37531 Trifolium pratense HOM05D005107 ORTHO05D006200 1.5e-85 320.5 340 50.3
PSO063G3062 Papaver somniferum HOM05D005107 ORTHO05D006200 7.3e-85 318.2 337 50.4
CARHR276850 Cardamine hirsuta HOM05D005107 ORTHO05D006200 9.6e-85 317.8 347 50.4
Sp2g26180 Schrenkiella parvula HOM05D005107 ORTHO05D006200 1.3e-84 317.4 347 50.7
Medtr4g105500 Medicago truncatula HOM05D005107 ORTHO05D006200 1.6e-84 317.0 331 51.4
Nitab4.5_0003229g0090 Nicotiana tabacum HOM05D005107 ORTHO05D006200 4.8e-84 315.5 291 58.1
PSO832G2872 Papaver somniferum HOM05D005107 ORTHO05D006200 4.0e-83 312.4 338 49.7
Peaxi162Scf00089g01740 Petunia axillaris HOM05D005107 ORTHO05D006200 5.3e-83 312.0 327 53.2
MSTRG.23144 Avicennia marina HOM05D005107 ORTHO05D006200 9.0e-83 311.2 345 50.4
BolC9t53818H Brassica oleracea HOM05D005107 ORTHO05D006200 1.2e-82 310.8 347 49.0
Thhalv10004512m.g Eutrema salsugineum HOM05D005107 ORTHO05D006200 2.6e-82 309.7 347 49.9
Sc22g0001200 Simmondsia chinensis HOM05D005107 ORTHO05D006200 7.6e-82 308.1 344 48.8
A09p08000 Brassica napus HOM05D005107 ORTHO05D006200 1.3e-81 307.4 338 49.7
SalBow5G2679 Salvia bowleyana HOM05D005107 ORTHO05D006200 1.3e-81 307.4 347 49.0
Psat4g058600 Pisum sativum HOM05D005107 ORTHO05D006200 2.2e-81 306.6 340 48.2
Ca_16156_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 2.9e-81 306.2 340 49.1
THA.LOC104821481 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 1.1e-80 304.3 334 48.5
Carub.0008s2376 Capsella rubella HOM05D005107 ORTHO05D006200 2.4e-80 303.1 285 55.8
Medtr3g077490 Medicago truncatula HOM05D005107 ORTHO05D006200 1.2e-79 300.8 340 48.8
MBI10_g44387_MAGBIO Magnolia biondii HOM05D005107 ORTHO05D006200 2.1e-79 300.1 292 54.1
Aa31LG11G620 Aethionema arabicum HOM05D005107 ORTHO05D006200 2.7e-79 299.7 337 49.0
THA.LOC104818212 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 2.7e-79 299.7 344 46.5
C09p09050 Brassica napus HOM05D005107 ORTHO05D006200 3.5e-79 299.3 338 48.8
BraA09t36452Z Brassica rapa HOM05D005107 ORTHO05D006200 4.6e-79 298.9 295 53.2
Cc06_g17290 Coffea canephora HOM05D005107 ORTHO05D006200 6.0e-79 298.5 335 50.7
AT5G63050 Arabidopsis thaliana HOM05D005107 ORTHO05D006200 6.6e-78 295.0 286 54.2
Psat5g115520 Pisum sativum HOM05D005107 ORTHO05D006200 2.5e-77 293.1 340 48.5
Manes.14G063800 Manihot esculenta HOM05D005107 ORTHO05D006200 4.3e-77 292.4 282 53.2
Peaxi162Scf00255g00912 Petunia axillaris HOM05D005107 ORTHO05D006200 5.6e-77 292.0 344 46.8
AUR62018143 Chenopodium quinoa HOM05D005107 ORTHO05D006200 7.3e-77 291.6 281 54.4
Oeu016417.1 Olea europaea HOM05D005107 ORTHO05D006200 9.6e-77 291.2 329 48.6
BcaB04g19949 Brassica carinata HOM05D005107 ORTHO05D006200 1.6e-76 290.4 286 54.9
AUR62042560 Chenopodium quinoa HOM05D005107 ORTHO05D006200 2.8e-76 289.7 281 54.1
TWI39G0316 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 1.1e-75 287.7 352 48.0
Ah.10g031930 Amaranthus hybridus HOM05D005107 ORTHO05D006200 5.3e-75 285.4 345 47.8
CsaV3_1G008660 Cucumis sativus L. HOM05D005107 ORTHO05D006200 9.0e-75 284.6 341 48.1
EL10Ac2g03054 Beta vulgaris HOM05D005107 ORTHO05D006200 1.2e-74 284.3 344 45.9
TPR.G14919 Trifolium pratense HOM05D005107 ORTHO05D006200 1.3e-73 280.8 340 47.4
BraA06t25929Z Brassica rapa HOM05D005107 ORTHO05D006200 2.9e-73 279.6 326 48.5
Dinv38563 Davidia involucrata HOM05D003072 ORTHO05D008464 8.4e-73 278.1 264 58.0
HanXRQChr05g0154601 Helianthus annuus HOM05D005107 ORTHO05D006200 1.1e-72 277.7 345 48.1
A06p29810 Brassica napus HOM05D005107 ORTHO05D006200 2.4e-72 276.6 325 48.3
BolC8t50877H Brassica oleracea HOM05D005107 ORTHO05D006200 2.4e-72 276.6 330 48.2
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 4.2e-72 275.8 327 49.2
CiPaw.12G028400 Carya illinoinensis HOM05D005107 ORTHO05D006200 7.1e-72 275.0 328 48.5
SalBow6G4644 Salvia bowleyana HOM05D005107 ORTHO05D006200 7.1e-72 275.0 347 44.7
BolC3t18614H Brassica oleracea HOM05D005107 ORTHO05D006200 4.6e-71 272.3 330 47.9
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 1.0e-70 271.2 320 48.4
ECA246G1934 Erigeron canadensis HOM05D005107 ORTHO05D006200 5.6e-69 265.4 333 46.8
C08p32660 Brassica napus HOM05D005107 ORTHO05D006200 7.4e-69 265.0 323 47.4
HanXRQChr08g0235041 Helianthus annuus HOM05D005107 ORTHO05D006200 3.7e-68 262.7 338 44.1
ClCG06G017120 Citrullus lanatus HOM05D005107 ORTHO05D006200 6.2e-68 261.9 330 46.7
Lsat_1_v5_gn_5_15301 Lactuca sativa HOM05D005107 ORTHO05D006200 5.3e-67 258.8 320 48.1
Migut.D01962 Erythranthe guttata HOM05D005107 ORTHO05D006200 4.5e-66 255.8 342 45.0
BcaC01g02550 Brassica carinata HOM05D005107 ORTHO05D006200 1.2e-63 247.7 330 44.5
Lj5A126T86 Lonicera japonica HOM05D005107 ORTHO05D006200 2.1e-63 246.9 278 47.8
unitig_26.g9615 Utricularia gibba HOM05D005107 ORTHO05D006200 3.5e-63 246.1 287 46.0
CDE05G1562 Ceratophyllum demersum HOM05D005107 ORTHO05D006200 3.0e-62 243.0 280 46.8
DCAR_016047 Daucus carota HOM05D005107 ORTHO05D006200 8.7e-62 241.5 343 40.2
MELO3C026284.2 Cucumis melo HOM05D005107 ORTHO05D006200 4.1e-59 232.6 332 44.0
Hund13172 Selenicereus undatus HOM05D005107 ORTHO05D006200 2.6e-58 229.9 316 41.8
Oeu024703.1 Olea europaea HOM05D005107 ORTHO05D006200 4.2e-56 222.6 199 56.8
HPP92_001300 Vanilla planifolia HOM05D005107 ORTHO05D006200 2.3e-54 216.9 331 41.4
C03p63570 Brassica napus HOM05D005107 ORTHO05D006200 1.3e-52 211.1 293 43.0
Eucgr.J01240 Eucalyptus grandis HOM05D005107 ORTHO05D006200 2.2e-52 210.3 137 70.8
Eucgr.C04410 Eucalyptus grandis HOM05D005107 ORTHO05D006200 2.5e-48 196.8 137 67.9
Eucgr.C03135 Eucalyptus grandis HOM05D005107 ORTHO05D006200 1.2e-47 194.5 129 69.0
ECA232G4933 Erigeron canadensis HOM05D005107 ORTHO05D006200 2.5e-45 186.8 332 39.5
BcaB02g09719 Brassica carinata HOM05D005107 ORTHO05D006200 9.7e-45 184.9 334 38.9
ECA232G2224 Erigeron canadensis HOM05D005107 ORTHO05D006200 2.2e-44 183.7 245 43.3
SGA_v2.0_scaffold90G27886 Striga asiatica HOM05D005107 ORTHO05D006200 1.8e-43 180.6 211 43.1
Lsat_1_v5_gn_1_28200 Lactuca sativa HOM05D005107 ORTHO05D006200 1.8e-35 154.1 320 37.2
HanXRQChr02g0035961 Helianthus annuus HOM05D005107 ORTHO05D006200 4.1e-35 152.9 286 38.5
BcaC04g23368 Brassica carinata HOM05D005107 ORTHO05D006200 1.7e-28 131.0 103 62.1
Duzib068G0452 Durio zibethinus HOM05D005107 ORTHO05D006200 1.6e-23 114.4 162 42.0
ATR1152G005 Amborella trichopoda HOM05D005107 ORTHO05D006200 1.7e-09 67.8 202 29.7
SEGI_21940 Sequoiadendron giganteum HOM05D024261 ORTHO05D006200 2.9e-09 67.0 290 27.6
Hma1.2p1_0522F.1_g171880 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 2.8e-07 60.5 39 74.4


User provided reference genes

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