Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G1337 Fragaria x ananassa HOM05D005335 ORTHO05D006472 6.9e-72 274.2 179 100.0
FvH4_5g08350 Fragaria vesca HOM05D005335 ORTHO05D006472 2.6e-71 272.3 179 99.4
FAN13G0785 Fragaria x ananassa HOM05D005335 ORTHO05D006472 8.1e-65 250.8 172 89.0
FAN04G0838 Fragaria x ananassa HOM05D005335 ORTHO05D006472 1.4e-64 250.0 173 97.1
FAN08G1274 Fragaria x ananassa HOM05D005335 ORTHO05D006472 6.9e-64 247.7 173 96.5
RcHm_v2.0_Chr7g0190101 Rosa chinensis HOM05D005335 ORTHO05D006472 2.5e-50 202.6 172 86.0
QL10p002879 Quercus lobata HOM05D005335 ORTHO05D006472 1.1e-29 134.0 186 56.5
Haze_07140 Corylus avellana HOM05D005335 ORTHO05D006472 1.9e-29 133.3 174 70.1
CsaV3_1G000550 Cucumis sativus L. HOM05D005335 ORTHO05D006472 3.2e-29 132.5 176 69.9
MD06G1141500 Malus domestica HOM05D005335 ORTHO05D006472 5.5e-29 131.7 174 70.1
ClCG06G017900 Citrullus lanatus HOM05D005335 ORTHO05D006472 7.2e-29 131.3 176 70.5
MELO3C026206.2 Cucumis melo HOM05D005335 ORTHO05D006472 4.7e-28 128.6 178 68.0
Duzib205G0334 Durio zibethinus HOM05D005335 ORTHO05D006472 1.0e-27 127.5 176 61.9
Cfa018794 Carpinus fangiana HOM05D005335 ORTHO05D006472 3.9e-27 125.6 177 68.9
Duzib084G1383 Durio zibethinus HOM05D005335 ORTHO05D006472 5.2e-27 125.2 178 51.1
MD14G1156700 Malus domestica HOM05D005335 ORTHO05D006472 2.0e-26 123.2 173 67.6
Hma1.2p1_0014F.1_g009400 Hydrangea macrophylla HOM05D005335 ORTHO05D006472 2.6e-26 122.9 176 61.4
Thecc.03G129400 Theobroma cacao HOM05D005335 ORTHO05D006472 3.3e-26 122.5 176 64.8
TAR371G0199 Trochodendron aralioides HOM05D005335 ORTHO05D006472 3.3e-26 122.5 172 60.5
Prupe.5G150800 Prunus persica HOM05D005335 ORTHO05D006472 4.4e-26 122.1 162 71.0
COL.COLO4_28131 Corchorus olitorius HOM05D005335 ORTHO05D006472 1.7e-25 120.2 184 65.8
CiPaw.11G007000 Carya illinoinensis HOM05D005335 ORTHO05D006472 2.8e-25 119.4 181 65.7
Manes.06G119800 Manihot esculenta HOM05D005335 ORTHO05D006472 6.3e-25 118.2 177 64.4
Cpa.g.sc13.114 Carica papaya HOM05D005335 ORTHO05D006472 1.1e-24 117.5 182 62.6
Atru.chr6.1795 Acer truncatum HOM05D005335 ORTHO05D006472 9.1e-24 114.4 177 58.8
TWI39G0987 Tripterygium wilfordii HOM05D005335 ORTHO05D006472 2.6e-23 112.8 176 65.9
Lsat_1_v5_gn_4_80981 Lactuca sativa HOM05D005335 ORTHO05D006472 3.5e-23 112.5 173 61.8
CSS0038536 Camellia sinensis var. sinensis HOM05D005335 ORTHO05D006472 5.9e-23 111.7 172 46.5
Potri.012G097901 Populus trichocarpa HOM05D005335 ORTHO05D006472 1.5e-21 107.1 183 59.0
vmacro19206 Vaccinium macrocarpon HOM05D005335 ORTHO05D006472 2.5e-21 106.3 178 52.8
Cc04_g09930 Coffea canephora HOM05D005335 ORTHO05D006472 3.2e-21 105.9 176 58.5
Sed0021893 Sechium edule HOM05D005335 ORTHO05D006472 4.2e-21 105.5 172 54.7
Rhsim08G0190300 Rhododendron simsii HOM05D005335 ORTHO05D006472 7.2e-21 104.8 177 52.5
Nn4g22311 Nelumbo nucifera HOM05D005335 ORTHO05D006472 1.2e-20 104.0 172 64.5
Dinv23148 Davidia involucrata HOM05D005335 ORTHO05D006472 1.6e-20 103.6 122 56.6
Nn3g16458 Nelumbo nucifera HOM05D005335 ORTHO05D006472 1.6e-20 103.6 179 43.6
TAR629G1091 Trochodendron aralioides HOM05D005335 ORTHO05D006472 1.6e-20 103.6 172 62.8
Ciclev10032959m.g Citrus clementina HOM05D005335 ORTHO05D006472 2.7e-20 102.8 173 61.8
Gohir.D07G055600 Gossypium hirsutum HOM05D005335 ORTHO05D006472 3.6e-20 102.4 174 60.9
Gorai.001G058900 Gossypium raimondii HOM05D005335 ORTHO05D006472 3.6e-20 102.4 174 60.9
HanXRQChr16g0498141 Helianthus annuus HOM05D005335 ORTHO05D006472 3.6e-20 102.4 174 55.7
PSO017G0745 Papaver somniferum HOM05D005335 ORTHO05D006472 3.6e-20 102.4 181 49.2
PSO478G2775 Papaver somniferum HOM05D005335 ORTHO05D006472 3.6e-20 102.4 181 54.7
HanXRQChr09g0273241 Helianthus annuus HOM05D005335 ORTHO05D006472 4.7e-20 102.1 172 58.1
MSTRG.11283 Avicennia marina HOM05D005335 ORTHO05D006472 6.1e-20 101.7 174 52.3
Dinv11173 Davidia involucrata HOM05D001420 ORTHO05D002488 6.1e-20 101.7 178 51.7
Gohir.A09G247000 Gossypium hirsutum HOM05D005335 ORTHO05D006472 1.8e-19 100.1 174 47.1
Sed0012251 Sechium edule HOM05D005335 ORTHO05D006472 1.8e-19 100.1 172 61.0
Gohir.A07G051200 Gossypium hirsutum HOM05D005335 ORTHO05D006472 2.3e-19 99.8 174 59.8
Sopen03g032000 Solanum pennellii HOM05D005335 ORTHO05D006472 2.3e-19 99.8 178 59.0
Lalb_Chr07g0183461 Lupinus albus HOM05D005335 ORTHO05D006472 4.0e-19 99.0 172 61.6
Nitab4.5_0002403g0010 Nicotiana tabacum HOM05D005335 ORTHO05D006472 4.0e-19 99.0 170 58.2
Sabra15G0117300 Salix brachista HOM05D005335 ORTHO05D006472 4.0e-19 99.0 177 57.1
CSS0021703 Camellia sinensis var. sinensis HOM05D005335 ORTHO05D006472 5.2e-19 98.6 169 43.2
Gohir.D09G247500 Gossypium hirsutum HOM05D005335 ORTHO05D006472 5.2e-19 98.6 174 41.4
Potri.015G096500 Populus trichocarpa HOM05D005335 ORTHO05D006472 5.2e-19 98.6 179 58.7
Nitab4.5_0000514g0170 Nicotiana tabacum HOM05D005335 ORTHO05D006472 6.8e-19 98.2 167 60.5
Solyc03g112920.1 Solanum lycopersicum HOM05D005335 ORTHO05D006472 8.8e-19 97.8 178 58.4
Gorai.006G272000 Gossypium raimondii HOM05D005335 ORTHO05D006472 1.2e-18 97.4 174 40.8
Medtr4g103250 Medicago truncatula HOM05D005335 ORTHO05D006472 1.2e-18 97.4 172 63.4
PGSC0003DMG400018091 Solanum tuberosum HOM05D005335 ORTHO05D006472 1.2e-18 97.4 174 59.2
PGR044G0086 Punica granatum HOM05D005335 ORTHO05D006472 1.5e-18 97.1 175 52.0
Psat4g066680 Pisum sativum HOM05D005335 ORTHO05D006472 3.4e-18 95.9 172 61.0
TPR.G19227 Trifolium pratense HOM05D005335 ORTHO05D006472 4.4e-18 95.5 172 59.9
Manes.14G051200 Manihot esculenta HOM05D005335 ORTHO05D006472 5.7e-18 95.1 172 61.6
VMungo1215G0398 Vigna mungo HOM05D005335 ORTHO05D006472 5.7e-18 95.1 176 60.2
BolC1t03128H Brassica oleracea HOM05D005335 ORTHO05D006472 7.5e-18 94.7 173 40.5
CAN.G1305.23 Capsicum annuum HOM05D005335 ORTHO05D006472 7.5e-18 94.7 175 58.3
BcaB05g23008 Brassica carinata HOM05D005335 ORTHO05D006472 9.8e-18 94.4 173 39.9
DCAR_016388 Daucus carota HOM05D005335 ORTHO05D006472 9.8e-18 94.4 174 52.3
A01p25690 Brassica napus HOM05D005335 ORTHO05D006472 1.3e-17 94.0 173 39.9
BraA01t02445Z Brassica rapa HOM05D005335 ORTHO05D006472 1.3e-17 94.0 173 39.9
Gohir.D08G258700 Gossypium hirsutum HOM05D005335 ORTHO05D006472 1.3e-17 94.0 174 39.1
Actinidia36728 Actinidia chinensis HOM05D005335 ORTHO05D006472 1.7e-17 93.6 144 44.4
Ca_26102_v3 Cicer arietinum L. HOM05D005335 ORTHO05D006472 1.7e-17 93.6 172 59.9
Gorai.009G431200 Gossypium raimondii HOM05D005335 ORTHO05D006472 2.2e-17 93.2 172 38.4
Gohir.D05G361600 Gossypium hirsutum HOM05D005335 ORTHO05D006472 3.7e-17 92.4 172 38.4
Oeu023482.1 Olea europaea HOM05D005335 ORTHO05D006472 4.8e-17 92.0 171 56.7
Lalb_Chr13g0297231 Lupinus albus HOM05D005335 ORTHO05D006472 6.3e-17 91.7 172 49.4
Sabra12G0071600 Salix brachista HOM05D005335 ORTHO05D006472 6.3e-17 91.7 160 56.9
A06p19120 Brassica napus HOM05D005335 ORTHO05D006472 1.1e-16 90.9 171 39.2
BraA06t24996Z Brassica rapa HOM05D005335 ORTHO05D006472 1.1e-16 90.9 171 39.2
Lj4g0005056 Lotus japonicus HOM05D005335 ORTHO05D006472 1.4e-16 90.5 172 45.9
AL5G28000 Arabidopsis lyrata HOM05D005335 ORTHO05D006472 1.8e-16 90.1 172 39.5
BcaC09g49876 Brassica carinata HOM05D005335 ORTHO05D006472 1.8e-16 90.1 173 57.2
Glyma.17G130400 Glycine max HOM05D005335 ORTHO05D006472 3.1e-16 89.4 172 58.7
Thhalv10010777m.g Eutrema salsugineum HOM05D005335 ORTHO05D006472 4.1e-16 89.0 165 39.4
THA.LOC104818185 Tarenaya hassleriana HOM05D005335 ORTHO05D006472 5.4e-16 88.6 172 54.7
Gorai.004G276200 Gossypium raimondii HOM05D005335 ORTHO05D006472 7.0e-16 88.2 170 39.4
CiPaw.12G043300 Carya illinoinensis HOM05D005335 ORTHO05D006472 9.1e-16 87.8 160 56.9
BcaC07g39341 Brassica carinata HOM05D005335 ORTHO05D006472 1.2e-15 87.4 171 38.6
C08p23580 Brassica napus HOM05D005335 ORTHO05D006472 1.2e-15 87.4 171 38.6
BolC8t49988H Brassica oleracea HOM05D005335 ORTHO05D006472 1.2e-15 87.4 171 38.6
Oeu005014.1 Olea europaea HOM05D005335 ORTHO05D006472 1.6e-15 87.0 174 54.0
TWI23G0456 Tripterygium wilfordii HOM05D005335 ORTHO05D006472 2.0e-15 86.7 175 58.3
Oeu045458.1 Olea europaea HOM05D005335 ORTHO05D006472 2.7e-15 86.3 171 55.6
Oeu045459.1 Olea europaea HOM05D005335 ORTHO05D006472 2.7e-15 86.3 171 55.6
Rhsim12G0175000 Rhododendron simsii HOM05D005335 ORTHO05D006472 2.7e-15 86.3 173 46.8
GSVIVG01008545001 Vitis vinifera HOM05D005335 ORTHO05D006472 3.5e-15 85.9 85 91.8
Peaxi162Scf00009g00007 Petunia axillaris HOM05D005335 ORTHO05D006472 4.5e-15 85.5 134 62.7
THA.LOC104821517 Tarenaya hassleriana HOM05D005335 ORTHO05D006472 4.5e-15 85.5 173 56.1
AT3G48550 Arabidopsis thaliana HOM05D005335 ORTHO05D006472 5.9e-15 85.1 173 38.2
MBI11_g05328_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 5.9e-15 85.1 162 56.2
Glyma.05G048500 Glycine max HOM05D005335 ORTHO05D006472 1.3e-14 84.0 173 61.3
Actinidia08873 Actinidia chinensis HOM05D001420 ORTHO05D002488 3.8e-14 82.4 169 41.4
BcaB01g00799 Brassica carinata HOM05D005335 ORTHO05D006472 3.8e-14 82.4 170 38.8
Gohir.A04G026600 Gossypium hirsutum HOM05D005335 ORTHO05D006472 5.0e-14 82.0 126 46.0
Sp5g13430 Schrenkiella parvula HOM05D005335 ORTHO05D006472 5.0e-14 82.0 127 42.5
Aqoxy3G00598 Aquilegia oxysepala HOM05D005335 ORTHO05D006472 6.5e-14 81.6 167 53.9
Carub.0005s1474 Capsella rubella HOM05D005335 ORTHO05D006472 5.5e-13 78.6 177 36.2
PSO478G4723 Papaver somniferum HOM05D005335 ORTHO05D006472 5.5e-13 78.6 134 56.7
Actinidia25571 Actinidia chinensis HOM05D005335 ORTHO05D006472 9.4e-13 77.8 122 47.5
Migut.D01260 Erythranthe guttata HOM05D005335 ORTHO05D006472 9.4e-13 77.8 179 52.0
CARHR157350 Cardamine hirsuta HOM05D005335 ORTHO05D006472 1.6e-12 77.0 123 47.2
Aqoxy5G03368 Aquilegia oxysepala HOM05D005335 ORTHO05D006472 6.1e-12 75.1 174 50.0
DCAR_007490 Daucus carota HOM05D005335 ORTHO05D006472 6.1e-12 75.1 174 36.2
Migut.I00507 Erythranthe guttata HOM05D005335 ORTHO05D006472 6.1e-12 75.1 185 54.1
PSO017G4217 Papaver somniferum HOM05D005335 ORTHO05D006472 1.0e-11 74.3 138 55.1
Aa31LG4G17170 Aethionema arabicum HOM05D005335 ORTHO05D006472 1.4e-11 73.9 89 47.2
CANSAT80G0357 Cannabis sativa HOM05D005335 ORTHO05D006472 1.4e-11 73.9 164 39.6
C01p32260 Brassica napus HOM05D005335 ORTHO05D006472 2.3e-11 73.2 121 45.5
Ah.04g153430 Amaranthus hybridus HOM05D005335 ORTHO05D006472 3.0e-11 72.8 188 34.0
Oeu030248.1 Olea europaea HOM05D005335 ORTHO05D006472 4.0e-11 72.4 172 50.6
Sc04g0000630 Simmondsia chinensis HOM05D005335 ORTHO05D006472 8.8e-11 71.2 134 38.1
AUR62029609 Chenopodium quinoa HOM05D005335 ORTHO05D006472 2.0e-10 70.1 127 40.9
EL10Ac5g11411 Beta vulgaris HOM05D005335 ORTHO05D006472 3.4e-10 69.3 127 40.9
AUR62034828 Chenopodium quinoa HOM05D005335 ORTHO05D006472 3.7e-09 65.9 126 38.9
Ah.11g045430 Amaranthus hybridus HOM05D005335 ORTHO05D006472 1.4e-08 63.9 127 38.6
THA.LOC104798946 Tarenaya hassleriana HOM05D005335 ORTHO05D006472 3.1e-08 62.8 173 46.8
unitig_744.g24466 Utricularia gibba HOM05D005335 ORTHO05D006472 3.1e-08 62.8 120 43.3
HanXRQChr05g0155191 Helianthus annuus HOM05D005335 ORTHO05D006472 9.1e-08 61.2 172 48.8
SGA_v2.0_scaffold161G37793 Striga asiatica HOM05D005335 ORTHO05D006472 2.0e-07 60.1 81 50.6
HPP92_009722 Vanilla planifolia HOM05D005335 ORTHO05D006472 2.0e-07 60.1 171 31.0


User provided reference genes

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