Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G1330 Fragaria x ananassa HOM05D007016 ORTHO05D008847 1.5e-164 582.8 291 100.0
FvH4_5g11000 Fragaria vesca HOM05D007016 ORTHO05D008847 7.1e-135 484.2 291 86.9
FAN04G1313 Fragaria x ananassa HOM05D007016 ORTHO05D008847 3.2e-127 458.8 291 83.5
FAN08G2008 Fragaria x ananassa HOM05D007016 ORTHO05D008847 1.2e-126 456.8 292 83.2
FAN13G1076 Fragaria x ananassa HOM05D007016 ORTHO05D008847 8.7e-117 424.1 291 78.0
RcHm_v2.0_Chr7g0186811 Rosa chinensis HOM05D007016 ORTHO05D008847 1.9e-111 406.4 291 74.2
MD14G1125100 Malus domestica HOM05D007016 ORTHO05D008847 7.2e-79 298.1 293 58.4
MD06G1117700 Malus domestica HOM05D007016 ORTHO05D008847 2.0e-76 290.0 267 59.9
Prupe.5G128800 Prunus persica HOM05D007016 ORTHO05D008847 1.8e-74 283.5 296 59.1
TAR375G0929 Trochodendron aralioides HOM05D007016 ORTHO05D008847 1.9e-63 246.9 244 57.8
Cfa011932 Carpinus fangiana HOM05D007016 ORTHO05D008847 5.6e-63 245.4 294 50.0
Haze_14080 Corylus avellana HOM05D007016 ORTHO05D008847 5.6e-63 245.4 265 52.1
Dinv12013 Davidia involucrata HOM05D007016 ORTHO05D008847 1.6e-62 243.8 291 50.9
Dinv34693 Davidia involucrata HOM05D007016 ORTHO05D008847 1.6e-62 243.8 291 50.5
vmacro11507 Vaccinium macrocarpon HOM05D007016 ORTHO05D008847 1.8e-61 240.4 273 50.9
GSVIVG01019642001 Vitis vinifera HOM05D007016 ORTHO05D008847 2.3e-61 240.0 279 49.8
Rhsim02G0251600 Rhododendron simsii HOM05D007016 ORTHO05D008847 4.0e-61 239.2 273 51.6
Actinidia22202 Actinidia chinensis HOM05D007016 ORTHO05D008847 3.4e-60 236.1 274 50.7
PGR031G1249 Punica granatum HOM05D007016 ORTHO05D008847 5.8e-60 235.3 280 50.4
Eucgr.D01686 Eucalyptus grandis HOM05D007016 ORTHO05D008847 4.9e-59 232.3 295 50.8
CiPaw.12G078100 Carya illinoinensis HOM05D007016 ORTHO05D008847 2.4e-58 229.9 281 50.2
Thecc.03G221900 Theobroma cacao HOM05D007016 ORTHO05D008847 5.4e-58 228.8 288 50.3
Glyma.01G230300 Glycine max HOM05D007016 ORTHO05D008847 7.0e-58 228.4 244 53.3
VMungo1215G3083 Vigna mungo HOM05D007016 ORTHO05D008847 6.6e-56 221.9 275 49.1
Ciclev10021806m.g Citrus clementina HOM05D007016 ORTHO05D008847 1.5e-55 220.7 294 48.3
Phvul.002G036800 Phaseolus vulgaris HOM05D007016 ORTHO05D008847 1.5e-55 220.7 279 47.3
Duzib084G0025 Durio zibethinus HOM05D000458 ORTHO05D000951 3.3e-55 219.5 246 52.8
QL02p028324 Quercus lobata HOM05D007016 ORTHO05D008847 3.3e-55 219.5 250 50.8
TWI81G0911 Tripterygium wilfordii HOM05D007016 ORTHO05D008847 3.3e-55 219.5 256 49.2
Gorai.003G076500 Gossypium raimondii HOM05D007016 ORTHO05D008847 4.3e-55 219.2 243 51.4
TWI15G0571 Tripterygium wilfordii HOM05D007016 ORTHO05D008847 6.2e-54 215.3 286 47.2
Aqoxy5G04260 Aquilegia oxysepala HOM05D007016 ORTHO05D008847 2.3e-53 213.4 284 47.9
Duzib205G1809 Durio zibethinus HOM05D007016 ORTHO05D008847 2.3e-53 213.4 270 48.9
MBI04_g33411_MAGBIO Magnolia biondii HOM05D007016 ORTHO05D008847 4.0e-53 212.6 276 45.7
Haze_09164 Corylus avellana HOM05D007016 ORTHO05D008847 5.2e-53 212.2 291 46.0
Oeu022037.1 Olea europaea HOM05D007016 ORTHO05D008847 1.5e-52 210.7 249 48.6
Manes.02G003500 Manihot esculenta HOM05D007016 ORTHO05D008847 9.8e-52 208.0 289 46.4
Nn3g18888 Nelumbo nucifera HOM05D007016 ORTHO05D008847 9.8e-52 208.0 287 47.7
Potri.003G146100 Populus trichocarpa HOM05D007016 ORTHO05D008847 9.8e-52 208.0 285 47.0
Atru.chr9.1899 Acer truncatum HOM05D007016 ORTHO05D008847 1.7e-51 207.2 241 50.2
Haze_09158 Corylus avellana HOM05D007016 ORTHO05D008847 2.9e-51 206.5 291 47.1
arahy.Tifrunner.gnm1.ann1.6JL1AX Arachis hypogaea HOM05D007016 ORTHO05D008847 4.9e-51 205.7 242 49.6
CsaV3_5G001730 Cucumis sativus L. HOM05D007016 ORTHO05D008847 4.9e-51 205.7 284 45.1
Sabra03G0106200 Salix brachista HOM05D007016 ORTHO05D008847 6.4e-51 205.3 295 44.7
Cc08_g16690 Coffea canephora HOM05D007016 ORTHO05D008847 1.1e-50 204.5 291 44.7
Potri.001G084600 Populus trichocarpa HOM05D007016 ORTHO05D008847 1.4e-50 204.1 248 50.0
arahy.Tifrunner.gnm1.ann1.CXQL6Y Arachis hypogaea HOM05D007016 ORTHO05D008847 1.9e-50 203.8 242 49.2
COL.COLO4_10789 Corchorus olitorius HOM05D000458 ORTHO05D000951 4.1e-50 202.6 255 49.0
ClCG01G001570 Citrullus lanatus HOM05D007016 ORTHO05D008847 2.1e-49 200.3 282 45.0
Sed0027229 Sechium edule HOM05D007016 ORTHO05D008847 2.7e-49 199.9 288 43.8
MELO3C005780.2 Cucumis melo HOM05D007016 ORTHO05D008847 6.6e-48 195.3 278 44.6
Ca_24467_v3 Cicer arietinum L. HOM05D007016 ORTHO05D008847 8.6e-48 194.9 246 49.6
Medtr5g008220 Medicago truncatula HOM05D007016 ORTHO05D008847 1.9e-47 193.7 238 47.9
Nitab4.5_0004251g0050 Nicotiana tabacum HOM05D007016 ORTHO05D008847 4.3e-47 192.6 292 42.1
Migut.O00796 Erythranthe guttata HOM05D007016 ORTHO05D008847 9.5e-47 191.4 276 45.7
HanXRQChr06g0166831 Helianthus annuus HOM05D007016 ORTHO05D008847 2.8e-46 189.9 240 45.8
SGA_v2.0_scaffold314G48366 Striga asiatica HOM05D007016 ORTHO05D008847 2.8e-46 189.9 245 48.6
ECA246G5308 Erigeron canadensis HOM05D007016 ORTHO05D008847 3.6e-46 189.5 250 44.0
LjContig00222g0018079 Lotus japonicus HOM05D007016 ORTHO05D008847 3.6e-46 189.5 274 43.4
AUR62007045 Chenopodium quinoa HOM05D007016 ORTHO05D008847 4.7e-46 189.1 244 47.5
Gohir.A02G097900 Gossypium hirsutum HOM05D007016 ORTHO05D008847 1.1e-45 188.0 288 43.4
Peaxi162Scf00074g00350 Petunia axillaris HOM05D000458 ORTHO05D000951 6.8e-45 185.3 241 45.6
Lsat_1_v5_gn_3_13941 Lactuca sativa HOM05D007016 ORTHO05D008847 8.9e-45 184.9 283 41.0
Cpa.g.sc175.19 Carica papaya HOM05D007016 ORTHO05D008847 1.2e-44 184.5 224 49.6
EL10Ac5g12439 Beta vulgaris HOM05D007016 ORTHO05D008847 2.0e-44 183.7 239 47.7
Sc01g0010620 Simmondsia chinensis HOM05D007016 ORTHO05D008847 2.0e-44 183.7 285 43.2
ATR0620G109 Amborella trichopoda HOM05D007016 ORTHO05D008847 2.6e-44 183.3 280 41.8
HPP92_022341 Vanilla planifolia HOM05D007016 ORTHO05D008847 4.4e-44 182.6 216 47.2
HPP92_022355 Vanilla planifolia HOM05D007016 ORTHO05D008847 4.4e-44 182.6 216 47.2
DCAR_006538 Daucus carota HOM05D007016 ORTHO05D008847 5.8e-44 182.2 241 47.7
PSO339G2192 Papaver somniferum HOM05D007016 ORTHO05D008847 9.9e-44 181.4 296 42.9
PSO339G4063 Papaver somniferum HOM05D007016 ORTHO05D008847 9.9e-44 181.4 296 43.2
MD16G1274000 Malus domestica HOM05D007016 ORTHO05D008847 4.9e-43 179.1 163 58.9
Gohir.D03G085700 Gossypium hirsutum HOM05D007016 ORTHO05D008847 1.4e-42 177.6 243 45.3
TPR.G38026 Trifolium pratense HOM05D007016 ORTHO05D008847 1.4e-42 177.6 220 48.2
Ah.07g197890 Amaranthus hybridus HOM05D007016 ORTHO05D008847 1.6e-41 174.1 290 39.7
Aa31LG9G230 Aethionema arabicum HOM05D007016 ORTHO05D008847 2.7e-41 173.3 211 49.8
A07p21030 Brassica napus HOM05D003273 ORTHO05D004023 2.7e-41 173.3 232 46.6
HanXRQChr17g0534751 Helianthus annuus HOM05D007016 ORTHO05D008847 6.0e-41 172.2 169 53.3
PGSC0003DMG400012122 Solanum tuberosum HOM05D007016 ORTHO05D008847 7.8e-41 171.8 169 54.4
BraA07t29790Z Brassica rapa HOM05D003273 ORTHO05D004023 1.3e-40 171.0 236 44.9
Thhalv10027936m.g Eutrema salsugineum HOM05D007016 ORTHO05D008847 1.7e-40 170.6 202 47.5
Sopen08g031240 Solanum pennellii HOM05D007016 ORTHO05D008847 1.7e-40 170.6 169 54.4
THA.LOC104809306 Tarenaya hassleriana HOM05D007016 ORTHO05D008847 8.6e-40 168.3 248 43.5
Solyc08g083030.4 Solanum lycopersicum HOM05D007016 ORTHO05D008847 1.5e-39 167.5 169 54.4
CAN.G567.80 Capsicum annuum HOM05D007016 ORTHO05D008847 3.3e-39 166.4 117 67.5
Lalb_Chr09g0320381 Lupinus albus HOM05D007016 ORTHO05D008847 3.3e-39 166.4 268 39.9
Zm00001eb428160 Zea mays HOM05D007016 ORTHO05D008847 3.3e-39 166.4 240 42.1
Nitab4.5_0007063g0030 Nicotiana tabacum HOM05D007016 ORTHO05D008847 7.3e-39 165.2 283 39.2
Sp7g00170 Schrenkiella parvula HOM05D007016 ORTHO05D008847 7.3e-39 165.2 241 44.0
BcaC02g08900 Brassica carinata HOM05D003273 ORTHO05D004023 9.6e-39 164.9 193 47.7
Carub.0007s3342 Capsella rubella HOM05D007016 ORTHO05D008847 1.2e-38 164.5 190 48.9
BcaB06g27684 Brassica carinata HOM05D003273 ORTHO05D004023 2.1e-38 163.7 212 44.3
BcaC08g44572 Brassica carinata HOM05D003273 ORTHO05D004023 2.1e-38 163.7 153 56.2
A04p15110 Brassica napus HOM05D003273 ORTHO05D005100 2.8e-38 163.3 212 44.3
AL7G47260 Arabidopsis lyrata HOM05D007016 ORTHO05D008847 3.6e-38 162.9 219 46.6
BraA04t17152Z Brassica rapa HOM05D003273 ORTHO05D005100 3.6e-38 162.9 212 44.3
AT5G41960 Arabidopsis thaliana HOM05D007016 ORTHO05D008847 6.2e-38 162.2 122 64.8
C04p49340 Brassica napus HOM05D003273 ORTHO05D005100 8.1e-38 161.8 211 44.1
BolC4t26521H Brassica oleracea HOM05D003273 ORTHO05D004023 8.1e-38 161.8 211 44.1
SEGI_36842 Sequoiadendron giganteum HOM05D007016 ORTHO05D008847 1.4e-37 161.0 192 44.8
C06p20380 Brassica napus HOM05D003273 ORTHO05D004023 3.1e-37 159.8 156 54.5
CARHR212600 Cardamine hirsuta HOM05D007016 ORTHO05D008847 4.0e-37 159.5 231 43.7
Os04g0585600 Oryza sativa ssp. japonica HOM05D007016 ORTHO05D008847 4.0e-37 159.5 236 40.7
Lsat_1_v5_gn_3_14061 Lactuca sativa HOM05D007016 ORTHO05D008847 5.2e-37 159.1 267 39.0
Pp3c14_22240 Physcomitrium patens HOM05D007016 ORTHO05D008847 2.9e-35 153.3 116 61.2
MSTRG.15575 Avicennia marina HOM05D007016 ORTHO05D008847 8.4e-35 151.8 268 38.8
unitig_62.g23644 Utricularia gibba HOM05D007016 ORTHO05D008847 2.4e-34 150.2 239 40.6
Mapoly0080s0071 Marchantia polymorpha HOM05D007016 ORTHO05D008847 1.2e-33 147.9 125 54.4
SMO164G0130 Selaginella moellendorffii HOM05D007016 ORTHO05D008847 4.6e-33 146.0 133 55.6
AagrBONN_evm.TU.Sc2ySwM_117.1459 Anthoceros agrestis HOM05D007016 ORTHO05D008847 3.9e-32 142.9 117 58.1
AUR62019909 Chenopodium quinoa HOM05D007016 ORTHO05D008847 8.7e-32 141.7 291 38.1
CBR_g26222 Chara braunii HOM05D007016 ORTHO05D008847 2.9e-27 126.7 164 43.9
Nitab4.5_0000051g0070 Nicotiana tabacum HOM05D007016 ORTHO05D008847 3.8e-27 126.3 120 55.8
CSS0028177 Camellia sinensis var. sinensis HOM05D007016 ORTHO05D008847 1.1e-26 124.8 274 36.5
Psat2g187480 Pisum sativum HOM05D007016 ORTHO05D008847 2.4e-26 123.6 90 65.6
arahy.Tifrunner.gnm1.ann1.PIY4C5 Arachis hypogaea HOM05D007016 ORTHO05D008847 4.2e-26 122.9 83 68.7
BolC6t37216H Brassica oleracea HOM05D007016 ORTHO05D008847 9.3e-26 121.7 153 47.1
CDE07G1000 Ceratophyllum demersum HOM05D007016 ORTHO05D008847 2.7e-25 120.2 179 39.7
SEGI_07436 Sequoiadendron giganteum HOM05D007016 ORTHO05D008847 1.3e-24 117.9 100 56.0
CANSAT21G1603 Cannabis sativa HOM05D007016 ORTHO05D008847 3.0e-16 90.1 301 30.9
arahy.Tifrunner.gnm1.ann1.HM96ZH Arachis hypogaea HOM05D007016 ORTHO05D008847 7.6e-12 75.5 154 37.7
Hund14199 Selenicereus undatus HOM05D007016 ORTHO05D008847 1.3e-11 74.7 148 37.8


User provided reference genes

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