Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g11660 Fragaria vesca HOM05D005092 ORTHO05D006073 7.2e-110 400.6 202 100.0
FAN18G1279 Fragaria x ananassa HOM05D005092 ORTHO05D006073 7.2e-110 400.6 202 100.0
FAN18G3046 Fragaria x ananassa HOM05D005092 ORTHO05D006073 7.2e-110 400.6 202 100.0
FAN08G0879 Fragaria x ananassa HOM05D005092 ORTHO05D006073 3.9e-108 394.8 202 98.0
FAN13G0604 Fragaria x ananassa HOM05D005092 ORTHO05D006073 2.0e-107 392.5 202 98.0
FAN04G2351 Fragaria x ananassa HOM05D005092 ORTHO05D006073 7.4e-107 390.6 202 97.5
RcHm_v2.0_Chr7g0186131 Rosa chinensis HOM05D005092 ORTHO05D006073 9.4e-94 347.1 209 88.0
MD14G1132700 Malus domestica HOM05D005092 ORTHO05D006073 2.4e-81 305.8 210 78.1
Prupe.5G124200 Prunus persica HOM05D005092 ORTHO05D006073 2.3e-79 299.3 208 77.9
MD06G1111400 Malus domestica HOM05D005092 ORTHO05D006073 1.4e-73 280.0 202 76.2
Manes.01G045210 Manihot esculenta HOM05D005092 ORTHO05D006073 9.2e-73 277.3 207 69.6
QL02p029645 Quercus lobata HOM05D005092 ORTHO05D006073 7.8e-72 274.2 211 70.6
Cfa011974 Carpinus fangiana HOM05D005092 ORTHO05D006073 8.6e-71 270.8 208 70.7
Haze_09102 Corylus avellana HOM05D005092 ORTHO05D006073 1.5e-70 270.0 208 71.2
Dinv38813 Davidia involucrata HOM05D005092 ORTHO05D006073 1.0e-68 263.8 188 73.9
Potri.001G088300 Populus trichocarpa HOM05D005092 ORTHO05D006073 2.3e-68 262.7 214 68.7
Ciclev10022161m.g Citrus clementina HOM05D005092 ORTHO05D006073 4.0e-68 261.9 214 67.3
Sabra01G0064600 Salix brachista HOM05D005092 ORTHO05D006073 4.0e-68 261.9 214 67.8
CANSAT21G1519 Cannabis sativa HOM05D005092 ORTHO05D006073 8.9e-68 260.8 205 67.8
Gohir.D12G239300 Gossypium hirsutum HOM05D005092 ORTHO05D006073 1.5e-67 260.0 210 69.5
Gorai.008G256400 Gossypium raimondii HOM05D005092 ORTHO05D006073 2.6e-67 259.2 210 69.0
THA.LOC104809322 Tarenaya hassleriana HOM05D005092 ORTHO05D006073 4.4e-67 258.5 201 71.6
Gohir.A12G238200 Gossypium hirsutum HOM05D005092 ORTHO05D006073 5.8e-67 258.1 210 69.0
Phvul.002G300600 Phaseolus vulgaris HOM05D005092 ORTHO05D006073 7.5e-67 257.7 211 63.5
DCAR_006514 Daucus carota HOM05D005092 ORTHO05D006073 9.8e-67 257.3 194 70.6
Aa31LG2G1490 Aethionema arabicum HOM05D005092 ORTHO05D006073 2.2e-66 256.1 205 68.3
arahy.Tifrunner.gnm1.ann1.99ISIC Arachis hypogaea HOM05D005092 ORTHO05D006073 2.2e-66 256.1 200 70.0
Thecc.03G302300 Theobroma cacao HOM05D005092 ORTHO05D006073 2.9e-66 255.8 211 67.3
CSS0040137 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 3.7e-66 255.4 214 65.9
arahy.Tifrunner.gnm1.ann1.CJJ4VI Arachis hypogaea HOM05D005092 ORTHO05D006073 6.4e-66 254.6 200 70.0
Cc08_g16360 Coffea canephora HOM05D005092 ORTHO05D006073 6.4e-66 254.6 186 72.6
Sp2g00240 Schrenkiella parvula HOM05D005092 ORTHO05D006073 1.4e-65 253.4 210 66.7
Glyma.05G218800 Glycine max HOM05D005092 ORTHO05D006073 1.9e-65 253.1 212 63.7
CiPaw.11G117500 Carya illinoinensis HOM05D005092 ORTHO05D006073 2.4e-65 252.7 217 65.9
AT1G64510 Arabidopsis thaliana HOM05D005092 ORTHO05D006073 4.1e-65 251.9 216 63.9
CARHR046440 Cardamine hirsuta HOM05D005092 ORTHO05D006073 7.0e-65 251.1 210 66.2
Glyma.08G024900 Glycine max HOM05D005092 ORTHO05D006073 9.2e-65 250.8 201 66.7
Duzib068G1375 Durio zibethinus HOM05D005092 ORTHO05D006073 1.2e-64 250.4 210 65.7
Cpa.g.sc15.7 Carica papaya HOM05D005092 ORTHO05D006073 1.6e-64 250.0 214 67.3
Duzib068G1058 Durio zibethinus HOM05D005092 ORTHO05D006073 3.5e-64 248.8 198 67.7
TAR425G0003 Trochodendron aralioides HOM05D005092 ORTHO05D006073 3.5e-64 248.8 214 62.6
BcaB07g31470 Brassica carinata HOM05D005092 ORTHO05D006073 4.6e-64 248.4 210 65.7
AL2G10290 Arabidopsis lyrata HOM05D005092 ORTHO05D006073 6.0e-64 248.1 214 64.5
Nitab4.5_0004515g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 6.0e-64 248.1 154 81.8
Dinv37500 Davidia involucrata HOM05D005092 ORTHO05D006073 7.8e-64 247.7 166 77.7
Thhalv10023690m.g Eutrema salsugineum HOM05D005092 ORTHO05D006073 7.8e-64 247.7 209 65.6
Medtr8g099720 Medicago truncatula HOM05D005092 ORTHO05D006073 1.0e-63 247.3 203 67.0
Atru.chr9.1939 Acer truncatum HOM05D005092 ORTHO05D006073 1.3e-63 246.9 214 65.0
COL.COLO4_10743 Corchorus olitorius HOM05D005092 ORTHO05D006073 1.7e-63 246.5 210 64.3
MBI07_g24777_MAGBIO Magnolia biondii HOM05D005092 ORTHO05D006073 1.7e-63 246.5 209 66.5
BcaB07g31497 Brassica carinata HOM05D005092 ORTHO05D006073 3.0e-63 245.7 205 68.3
Actinidia04188 Actinidia chinensis HOM05D005092 ORTHO05D006073 3.9e-63 245.4 154 77.3
TWI81G0988 Tripterygium wilfordii HOM05D005092 ORTHO05D006073 3.9e-63 245.4 215 64.7
Carub.0002s0024 Capsella rubella HOM05D005092 ORTHO05D006073 6.6e-63 244.6 154 80.5
HanXRQChr17g0535041 Helianthus annuus HOM05D005092 ORTHO05D006073 6.6e-63 244.6 190 66.8
Nn3g18958 Nelumbo nucifera HOM05D005092 ORTHO05D006073 6.6e-63 244.6 212 64.2
Nitab4.5_0002367g0080 Nicotiana tabacum HOM05D005092 ORTHO05D006073 6.6e-63 244.6 203 66.5
A09p14390 Brassica napus HOM05D005092 ORTHO05D006073 1.1e-62 243.8 207 66.2
BcaC04g22575 Brassica carinata HOM05D005092 ORTHO05D006073 2.5e-62 242.7 211 65.4
BolC9t54633H Brassica oleracea HOM05D005092 ORTHO05D006073 2.5e-62 242.7 209 66.5
Ca_17461_v3 Cicer arietinum L. HOM05D005092 ORTHO05D006073 2.5e-62 242.7 189 69.3
Nitab4.5_0006302g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 2.5e-62 242.7 200 67.0
C09p17310 Brassica napus HOM05D005092 ORTHO05D006073 3.3e-62 242.3 208 66.8
C09p17730 Brassica napus HOM05D005092 ORTHO05D006073 3.3e-62 242.3 208 66.8
BolC9t54667H Brassica oleracea HOM05D005092 ORTHO05D006073 3.3e-62 242.3 208 66.8
Solyc08g082690.2 Solanum lycopersicum HOM05D005092 ORTHO05D006073 3.3e-62 242.3 191 69.6
Sopen08g030910 Solanum pennellii HOM05D005092 ORTHO05D006073 3.3e-62 242.3 191 69.6
A09p14650 Brassica napus HOM05D005092 ORTHO05D006073 4.3e-62 241.9 208 65.4
BraA09t37111Z Brassica rapa HOM05D005092 ORTHO05D006073 4.3e-62 241.9 218 63.3
Lj4g0014821 Lotus japonicus HOM05D005092 ORTHO05D006073 4.3e-62 241.9 208 63.9
ATR0602G266 Amborella trichopoda HOM05D005092 ORTHO05D006073 7.3e-62 241.1 212 64.6
BraA09t37086Z Brassica rapa HOM05D005092 ORTHO05D006073 7.3e-62 241.1 207 65.7
Peaxi162Scf00117g00912 Petunia axillaris HOM05D005092 ORTHO05D006073 1.6e-61 240.0 154 78.6
PGSC0003DMG400012136 Solanum tuberosum HOM05D005092 ORTHO05D006073 1.6e-61 240.0 191 69.1
Lalb_Chr09g0332211 Lupinus albus HOM05D005092 ORTHO05D006073 2.1e-61 239.6 186 71.0
Lsat_1_v5_gn_6_9541 Lactuca sativa HOM05D005092 ORTHO05D006073 2.8e-61 239.2 188 66.0
PGR031G0045 Punica granatum HOM05D005092 ORTHO05D006073 2.8e-61 239.2 273 53.1
Actinidia22183 Actinidia chinensis HOM05D005092 ORTHO05D006073 6.2e-61 238.0 172 69.8
PSO384G1727 Papaver somniferum HOM05D005092 ORTHO05D006073 6.2e-61 238.0 211 63.5
Duzib068G0950 Durio zibethinus HOM05D005092 ORTHO05D006073 1.1e-60 237.3 211 64.0
AUR62019873 Chenopodium quinoa HOM05D005092 ORTHO05D006073 1.4e-60 236.9 210 64.8
Ah.12g052820 Amaranthus hybridus HOM05D005092 ORTHO05D006073 1.8e-60 236.5 154 77.3
AUR62007009 Chenopodium quinoa HOM05D005092 ORTHO05D006073 3.1e-60 235.7 183 69.4
CDE02G4008 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 4.0e-60 235.3 210 62.9
Ah.07g197620 Amaranthus hybridus HOM05D005092 ORTHO05D006073 5.2e-60 235.0 210 62.9
CSS0022378 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 8.9e-60 234.2 203 63.5
CSS0038140 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.2e-59 233.8 203 63.5
HanXRQChr07g0190751 Helianthus annuus HOM05D005092 ORTHO05D006073 1.2e-59 233.8 155 76.1
CDE08G0689 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 1.5e-59 233.4 208 61.5
Psat7g023960 Pisum sativum HOM05D005092 ORTHO05D006073 2.0e-59 233.0 154 77.9
PSO135G0789 Papaver somniferum HOM05D005092 ORTHO05D006073 2.6e-59 232.6 209 62.7
EL10Ac5g12949 Beta vulgaris HOM05D005092 ORTHO05D006073 4.4e-59 231.9 205 62.4
Aqoxy7G00063 Aquilegia oxysepala HOM05D005092 ORTHO05D006073 7.5e-59 231.1 198 63.6
CSS0048233 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 2.2e-58 229.6 203 63.1
Sed0021119 Sechium edule HOM05D005092 ORTHO05D006073 2.9e-58 229.2 207 62.8
Hma1.2p1_0440F.1_g153550 Hydrangea macrophylla HOM05D005092 ORTHO05D006073 4.9e-58 228.4 156 75.6
CDE02G0126 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 4.1e-57 225.3 206 60.2
BcaC04g22614 Brassica carinata HOM05D005092 ORTHO05D006073 1.3e-55 220.3 196 63.3
Sc07g0010130 Simmondsia chinensis HOM05D005092 ORTHO05D006073 3.0e-55 219.2 200 63.0
Lj2A163T69 Lonicera japonica HOM05D005092 ORTHO05D006073 8.6e-55 217.6 210 59.0
Nitab4.5_0015800g0020 Nicotiana tabacum HOM05D005092 ORTHO05D006073 8.6e-55 217.6 154 74.7
TPR.G3401 Trifolium pratense HOM05D005092 ORTHO05D006073 1.1e-54 217.2 159 70.4
HanXRQChr17g0534641 Helianthus annuus HOM05D005092 ORTHO05D006073 2.5e-54 216.1 123 84.6
MSTRG.14949 Avicennia marina HOM05D005092 ORTHO05D006073 3.3e-54 215.7 148 75.0
Lalb_Chr14g0362701 Lupinus albus HOM05D005092 ORTHO05D006073 7.3e-54 214.5 199 58.8
CSS0033480 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 2.8e-53 212.6 223 56.5
SalBow8G0392 Salvia bowleyana HOM05D005092 ORTHO05D006073 3.6e-53 212.2 189 61.4
Rhsim02G0248400 Rhododendron simsii HOM05D005092 ORTHO05D006073 4.7e-53 211.8 182 62.6
unitig_62.g23053 Utricularia gibba HOM05D005092 ORTHO05D006073 8.1e-53 211.1 205 60.5
Migut.M00752 Erythranthe guttata HOM05D005092 ORTHO05D006073 1.4e-52 210.3 148 73.6
MELO3C005759.2 Cucumis melo HOM05D005092 ORTHO05D006073 4.0e-52 208.8 212 56.6
Lj8A204G63 Lonicera japonica HOM05D005092 ORTHO05D006073 2.2e-50 203.0 122 78.7
Hund11375 Selenicereus undatus HOM05D005092 ORTHO05D006073 2.2e-50 203.0 209 53.1
CsaV3_5G001930 Cucumis sativus L. HOM05D005092 ORTHO05D006073 1.1e-49 200.7 202 58.4
CAN.G567.28 Capsicum annuum HOM05D005092 ORTHO05D006073 7.1e-49 198.0 312 43.9
SGA_v2.0_scaffold34G13767 Striga asiatica HOM05D005092 ORTHO05D006073 7.1e-49 198.0 122 75.4
Peaxi162Scf00074g00540 Petunia axillaris HOM05D005092 ORTHO05D006073 1.2e-48 197.2 171 60.8
HPP92_003874 Vanilla planifolia HOM05D003037 ORTHO05D003659 4.6e-48 195.3 157 64.3
HPP92_003891 Vanilla planifolia HOM05D005092 ORTHO05D006073 6.0e-48 194.9 155 64.5
Migut.M00753 Erythranthe guttata HOM05D005092 ORTHO05D006073 3.0e-47 192.6 186 59.1
Os03g0843400 Oryza sativa ssp. japonica HOM05D005092 ORTHO05D006073 1.2e-45 187.2 120 75.8
GSVIVG01019593001 Vitis vinifera HOM05D005092 ORTHO05D006073 1.6e-45 186.8 102 91.2
Zm00001eb064130 Zea mays HOM05D005092 ORTHO05D006073 2.4e-44 183.0 120 73.3
SalBow7G2047 Salvia bowleyana HOM05D005092 ORTHO05D006073 3.1e-44 182.6 199 53.8
SalBow7G3059 Salvia bowleyana HOM05D005092 ORTHO05D006073 6.8e-44 181.4 203 50.2
vmacro11536 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 7.6e-43 177.9 212 51.9
ECA233G5643 Erigeron canadensis HOM05D005092 ORTHO05D006073 6.4e-42 174.9 160 60.6
Atru.chr10.1577 Acer truncatum HOM05D005092 ORTHO05D006073 1.1e-36 157.5 93 78.5
Sabra03G0103200 Salix brachista HOM05D005092 ORTHO05D006073 1.5e-35 153.7 214 48.6
Mapoly0115s0060 Marchantia polymorpha HOM05D005092 ORTHO05D006073 3.4e-35 152.5 118 61.0
CBR_g45689 Chara braunii HOM05D005092 ORTHO05D006073 5.8e-35 151.8 115 63.5
Pp3c15_17560 Physcomitrium patens HOM05D005092 ORTHO05D006073 4.9e-34 148.7 121 59.5
Pp3c9_9180 Physcomitrium patens HOM05D005092 ORTHO05D006073 1.9e-33 146.7 121 58.7
SMO141G0012 Selaginella moellendorffii HOM05D005092 ORTHO05D006073 9.3e-33 144.4 106 60.4
Eucgr.D01771 Eucalyptus grandis HOM05D005092 ORTHO05D006073 1.6e-32 143.7 81 86.4
AagrBONN_evm.TU.Sc2ySwM_117.1171 Anthoceros agrestis HOM05D005092 ORTHO05D006073 2.1e-32 143.3 124 57.3
SEGI_34901 Sequoiadendron giganteum HOM05D005092 ORTHO05D006073 6.2e-29 131.7 94 66.0
CSS0046261 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 2.9e-26 122.9 67 86.6
CSS0048158 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 2.9e-26 122.9 67 86.6
vmacro22558 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 2.9e-26 122.9 80 75.0
Nn1g00282 Nelumbo nucifera HOM05D005092 ORTHO05D006073 1.7e-18 97.1 134 46.3
Oeu061337.1 Olea europaea HOM05D005092 ORTHO05D006073 2.1e-16 90.1 69 66.7
ClCG01G001790 Citrullus lanatus HOM05D005092 ORTHO05D006073 1.0e-15 87.8 141 45.4
FAN28G1308 Fragaria x ananassa HOM05D022793 ORTHO05D200777 3.9e-15 85.9 63 69.8
A01p35480 Brassica napus HOM05D005092 ORTHO05D006073 9.6e-14 81.3 50 76.0
HanXRQChr07g0190051 Helianthus annuus HOM05D005092 ORTHO05D006073 1.1e-09 67.8 130 35.4
FAN28G2710 Fragaria x ananassa HOM05D022793 ORTHO05D006073 7.1e-09 65.1 36 83.3
FAN09G3217 Fragaria x ananassa HOM05D022793 ORTHO05D006073 2.7e-08 63.2 35 82.9
A04p11060 Brassica napus HOM05D023372 ORTHO05D024533 6.7e-07 58.5 38 73.7


User provided reference genes

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