Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g04420 Fragaria vesca HOM05D007275 ORTHO05D009279 2.1e-46 188.7 97 100.0
FAN18G1142 Fragaria x ananassa HOM05D007275 ORTHO05D009279 2.1e-46 188.7 97 100.0
FAN18G2266 Fragaria x ananassa HOM05D007275 ORTHO05D009279 2.1e-46 188.7 97 100.0
FAN08G0060 Fragaria x ananassa HOM05D007275 ORTHO05D009279 5.6e-44 180.6 97 97.9
FAN13G1788 Fragaria x ananassa HOM05D007275 ORTHO05D009279 6.9e-42 173.7 125 77.6
RcHm_v2.0_Chr7g0195121 Rosa chinensis HOM05D007275 ORTHO05D009279 2.2e-40 168.7 97 91.8
FvH4_3g01740 Fragaria vesca HOM05D007275 ORTHO05D009279 2.9e-40 168.3 97 87.6
Prupe.5G117300 Prunus persica HOM05D007275 ORTHO05D009279 3.4e-33 144.8 97 76.3
QL02p030913 Quercus lobata HOM05D007275 ORTHO05D009279 7.6e-33 143.7 96 74.0
CSS0010422 Camellia sinensis var. sinensis HOM05D007275 ORTHO05D009279 9.9e-33 143.3 95 76.8
MD06G1104700 Malus domestica HOM05D007275 ORTHO05D009279 3.8e-32 141.4 97 74.2
MD14G1123400 Malus domestica HOM05D007275 ORTHO05D009279 4.9e-32 141.0 97 75.3
Hma1.2p1_0359F.1_g135280 Hydrangea macrophylla HOM05D007275 ORTHO05D009279 1.4e-31 139.4 97 72.2
Gohir.D12G236900 Gossypium hirsutum HOM05D007275 ORTHO05D009279 3.2e-31 138.3 97 74.2
Gorai.008G253500 Gossypium raimondii HOM05D007275 ORTHO05D009279 3.2e-31 138.3 97 74.2
Dinv38844 Davidia involucrata HOM05D007275 ORTHO05D009279 4.2e-31 137.9 97 72.2
Actinidia22145 Actinidia chinensis HOM05D007275 ORTHO05D009279 5.4e-31 137.5 97 72.2
Ciclev10024283m.g Citrus clementina HOM05D007275 ORTHO05D009279 7.1e-31 137.1 95 72.6
Gohir.A12G235700 Gossypium hirsutum HOM05D007275 ORTHO05D009279 7.1e-31 137.1 97 73.2
FAN04G0348 Fragaria x ananassa HOM05D007275 ORTHO05D009279 1.2e-30 136.3 97 77.3
Phvul.002G297500 Phaseolus vulgaris HOM05D007275 ORTHO05D009279 2.7e-30 135.2 97 70.1
Nn1g01839 Nelumbo nucifera HOM05D007275 ORTHO05D009279 3.5e-30 134.8 97 72.2
Atru.chr9.2015 Acer truncatum HOM05D007275 ORTHO05D009279 7.9e-30 133.7 92 72.8
Glyma.08G022200 Glycine max HOM05D007275 ORTHO05D009279 1.3e-29 132.9 93 72.0
Lj4g0015273 Lotus japonicus HOM05D007275 ORTHO05D009279 1.3e-29 132.9 93 71.0
Nitab4.5_0000726g0090 Nicotiana tabacum HOM05D007275 ORTHO05D009279 1.3e-29 132.9 94 71.3
Cc08_g15930 Coffea canephora HOM05D007275 ORTHO05D009279 1.8e-29 132.5 97 69.1
DCAR_005035 Daucus carota HOM05D007275 ORTHO05D009279 1.8e-29 132.5 98 72.4
GSVIVG01019513001 Vitis vinifera HOM05D007275 ORTHO05D009279 1.8e-29 132.5 97 69.1
Gohir.D11G024100 Gossypium hirsutum HOM05D007275 ORTHO05D009279 3.0e-29 131.7 95 70.5
Gorai.007G025800 Gossypium raimondii HOM05D007275 ORTHO05D009279 3.0e-29 131.7 95 70.5
arahy.Tifrunner.gnm1.ann1.GQP3LI Arachis hypogaea HOM05D007275 ORTHO05D009279 3.9e-29 131.3 95 67.4
Gohir.A11G024400 Gossypium hirsutum HOM05D007275 ORTHO05D009279 3.9e-29 131.3 95 70.5
Lalb_Chr16g0390621 Lupinus albus HOM05D007275 ORTHO05D009279 3.9e-29 131.3 94 70.2
arahy.Tifrunner.gnm1.ann1.IALD8X Arachis hypogaea HOM05D007275 ORTHO05D009279 5.1e-29 131.0 95 67.4
Eucgr.D01727 Eucalyptus grandis HOM05D007275 ORTHO05D009279 5.1e-29 131.0 97 69.1
Potri.001G092700 Populus trichocarpa HOM05D007275 ORTHO05D009279 5.1e-29 131.0 95 70.5
Thecc.03G296000 Theobroma cacao HOM05D007275 ORTHO05D009279 5.1e-29 131.0 97 70.1
TPR.G3422 Trifolium pratense HOM05D007275 ORTHO05D009279 6.7e-29 130.6 97 70.1
CANSAT21G2355 Cannabis sativa HOM05D007275 ORTHO05D009279 8.7e-29 130.2 93 67.7
Peaxi162Scf00074g01033 Petunia axillaris HOM05D007275 ORTHO05D009279 8.7e-29 130.2 92 72.8
Sc01g0010220 Simmondsia chinensis HOM05D007275 ORTHO05D009279 1.1e-28 129.8 97 69.1
CAN.G532.107 Capsicum annuum HOM05D007275 ORTHO05D009279 1.5e-28 129.4 97 70.1
Nn3g19047 Nelumbo nucifera HOM05D007275 ORTHO05D009279 1.5e-28 129.4 97 68.0
AUR62010827 Chenopodium quinoa HOM05D007275 ORTHO05D009279 1.9e-28 129.0 97 68.0
Glyma.05G216300 Glycine max HOM05D007275 ORTHO05D009279 1.9e-28 129.0 93 69.9
Sabra01G0069000 Salix brachista HOM05D007275 ORTHO05D009279 1.9e-28 129.0 95 69.5
COL.COLO4_10681 Corchorus olitorius HOM05D007275 ORTHO05D009279 3.3e-28 128.3 97 70.1
Hma1.2p1_0229F.1_g097175 Hydrangea macrophylla HOM05D007275 ORTHO05D009279 3.3e-28 128.3 92 69.6
Hma1.2p1_0229F.1_g097200 Hydrangea macrophylla HOM05D007275 ORTHO05D009279 3.3e-28 128.3 92 69.6
Cfa012796 Carpinus fangiana HOM05D007275 ORTHO05D009279 4.3e-28 127.9 98 69.4
Sabra03G0100000 Salix brachista HOM05D007275 ORTHO05D009279 5.6e-28 127.5 94 67.0
TAR629G0721 Trochodendron aralioides HOM05D007275 ORTHO05D010861 7.4e-28 127.1 97 66.0
CSS0024458 Camellia sinensis var. sinensis HOM05D007275 ORTHO05D009279 9.6e-28 126.7 97 68.0
Haze_08628 Corylus avellana HOM05D007275 ORTHO05D009279 9.6e-28 126.7 91 70.3
PGSC0003DMG400012158 Solanum tuberosum HOM05D007275 ORTHO05D009279 9.6e-28 126.7 97 68.0
EL10Ac5g12903 Beta vulgaris HOM05D007275 ORTHO05D009279 1.3e-27 126.3 97 67.0
CiPaw.12G084200 Carya illinoinensis HOM05D007275 ORTHO05D009279 1.6e-27 125.9 97 66.0
SalBow1G0766 Salvia bowleyana HOM05D007275 ORTHO05D009279 1.6e-27 125.9 97 66.0
TAR375G1117 Trochodendron aralioides HOM05D007275 ORTHO05D009279 1.6e-27 125.9 97 68.0
Manes.02G011100 Manihot esculenta HOM05D007275 ORTHO05D009279 2.1e-27 125.6 93 69.9
Nitab4.5_0000223g0330 Nicotiana tabacum HOM05D007275 ORTHO05D009279 2.8e-27 125.2 97 66.0
SalBow1G5261 Salvia bowleyana HOM05D007275 ORTHO05D009279 3.7e-27 124.8 97 64.9
Oeu038573.1 Olea europaea HOM05D007275 ORTHO05D009279 4.8e-27 124.4 97 64.9
PGR031G2423 Punica granatum HOM05D007275 ORTHO05D009279 4.8e-27 124.4 97 66.0
MBI06_g46619_MAGBIO Magnolia biondii HOM05D007275 ORTHO05D009279 6.2e-27 124.0 90 70.0
MBI06_g46730_MAGBIO Magnolia biondii HOM05D007275 ORTHO05D000022 6.2e-27 124.0 90 70.0
Peaxi162Scf00117g01123 Petunia axillaris HOM05D007275 ORTHO05D009279 6.2e-27 124.0 97 66.0
Nitab4.5_0010144g0020 Nicotiana tabacum HOM05D007275 ORTHO05D009279 8.1e-27 123.6 97 66.0
Solyc08g082160.3 Solanum lycopersicum HOM05D007275 ORTHO05D009279 1.8e-26 122.5 97 67.0
Sopen08g030440 Solanum pennellii HOM05D007275 ORTHO05D009279 1.8e-26 122.5 97 67.0
Migut.A00668 Erythranthe guttata HOM05D007275 ORTHO05D009279 3.1e-26 121.7 96 64.6
Potri.003G138800 Populus trichocarpa HOM05D007275 ORTHO05D009279 1.2e-25 119.8 94 62.8
Dinv37542 Davidia involucrata HOM05D007275 ORTHO05D009279 2.0e-25 119.0 85 70.6
Zm00001eb338790 Zea mays HOM05D007275 ORTHO05D009279 1.3e-24 116.3 97 63.9
Medtr8g099385 Medicago truncatula HOM05D007275 ORTHO05D009279 2.2e-24 115.5 94 62.8
ClCG07G014960 Citrullus lanatus HOM05D007275 ORTHO05D009279 3.2e-23 111.7 88 62.5
Sed0004885 Sechium edule HOM05D007275 ORTHO05D009279 3.5e-22 108.2 89 60.7
ECA246G4125 Erigeron canadensis HOM05D007275 ORTHO05D009279 7.9e-22 107.1 93 55.9
ATR0320G041 Amborella trichopoda HOM05D007275 ORTHO05D009279 1.0e-21 106.7 100 58.0
MELO3C032816.2 Cucumis melo HOM05D007275 ORTHO05D009279 1.3e-21 106.3 88 61.4
HanXRQChr06g0166541 Helianthus annuus HOM05D007275 ORTHO05D009279 1.3e-21 106.3 94 54.3
TWI60G1254 Tripterygium wilfordii HOM05D007275 ORTHO05D009279 1.3e-21 106.3 93 59.1
Aqoxy7G00131 Aquilegia oxysepala HOM05D007275 ORTHO05D009279 1.8e-21 105.9 97 57.7
CsaV3_4G006490 Cucumis sativus L. HOM05D007275 ORTHO05D009279 1.8e-21 105.9 88 61.4
BcaC09g50944 Brassica carinata HOM05D007275 ORTHO05D009279 2.3e-21 105.5 95 54.7
A01p15130 Brassica napus HOM05D007275 ORTHO05D009279 2.3e-21 105.5 95 54.7
C01p19030 Brassica napus HOM05D007275 ORTHO05D009279 2.3e-21 105.5 95 54.7
BolC1t01829H Brassica oleracea HOM05D007275 ORTHO05D009279 2.3e-21 105.5 95 54.7
HanXRQChr17g0535191 Helianthus annuus HOM05D007275 ORTHO05D009279 2.3e-21 105.5 97 53.6
Ah.12g052450 Amaranthus hybridus HOM05D006525 ORTHO05D007845 5.1e-21 104.4 76 68.4
Nitab4.5_0007661g0010 Nicotiana tabacum HOM05D007275 ORTHO05D009279 6.7e-21 104.0 73 68.5
BcaNung01089 Brassica carinata HOM05D007275 ORTHO05D009279 1.5e-20 102.8 95 54.7
Duzib068G1121 Durio zibethinus HOM05D007275 ORTHO05D009279 1.5e-20 102.8 73 75.3
Lsat_1_v5_gn_3_10301 Lactuca sativa HOM05D007275 ORTHO05D009279 1.5e-20 102.8 95 54.7
BcaNung01088 Brassica carinata HOM05D007275 ORTHO05D009279 1.9e-20 102.4 95 54.7
CSS0026606 Camellia sinensis var. sinensis HOM05D007275 ORTHO05D009279 1.9e-20 102.4 69 73.9
unitig_748.g8124 Utricularia gibba HOM05D007275 ORTHO05D009279 2.5e-20 102.1 87 62.1
Hma1.2p1_2596F.1_g325120 Hydrangea macrophylla HOM05D007275 ORTHO05D009279 3.3e-20 101.7 71 71.8
CDE10G0124 Ceratophyllum demersum HOM05D007275 ORTHO05D009279 1.3e-19 99.8 83 62.7
AUR62019826 Chenopodium quinoa HOM05D007275 ORTHO05D009279 2.1e-19 99.0 76 64.5
Oeu063532.1 Olea europaea HOM05D007275 ORTHO05D009279 3.7e-19 98.2 85 61.2
CDE10G0242 Ceratophyllum demersum HOM05D000974 ORTHO05D002201 1.8e-18 95.9 84 59.5
SEGI_25349 Sequoiadendron giganteum HOM05D007275 ORTHO05D009279 4.0e-18 94.7 95 50.5
Psat7g026480 Pisum sativum HOM05D007275 ORTHO05D009279 1.2e-17 93.2 95 54.7
Rhsim02G0242000 Rhododendron simsii HOM05D007275 ORTHO05D009279 1.3e-16 89.7 67 65.7
Thhalv10027148m.g Eutrema salsugineum HOM05D007275 ORTHO05D009279 2.8e-11 72.0 67 55.2
Lalb_Chr16g0390631 Lupinus albus HOM05D007275 ORTHO05D009279 2.4e-10 68.9 49 69.4
ECA236G1637 Erigeron canadensis HOM05D000015 ORTHO05D009146 2.0e-09 65.9 89 41.6
Aqoxy2G01184 Aquilegia oxysepala HOM05D000015 ORTHO05D009146 2.9e-08 62.0 95 42.1
Dinv13936 Davidia involucrata HOM05D000015 ORTHO05D009146 8.5e-08 60.5 57 54.4
Aqoxy1G02962 Aquilegia oxysepala HOM05D000015 ORTHO05D009146 2.5e-07 58.9 57 52.6
Actinidia26881 Actinidia chinensis HOM05D000015 ORTHO05D009146 3.2e-07 58.5 93 38.7
QL03p004924 Quercus lobata HOM05D000015 ORTHO05D009146 5.5e-07 57.8 94 39.4
QL05p071991 Quercus lobata HOM05D000015 ORTHO05D009146 5.5e-07 57.8 94 39.4
CANSAT56G2899 Cannabis sativa HOM05D000015 ORTHO05D009146 9.3e-07 57.0 56 51.8
Medtr4g132620 Medicago truncatula HOM05D000015 ORTHO05D009146 9.3e-07 57.0 68 45.6
ECA234G0006 Erigeron canadensis HOM05D000015 ORTHO05D003525 1.2e-06 56.6 106 33.0
HanXRQChr15g0470561 Helianthus annuus HOM05D000015 ORTHO05D009146 1.6e-06 56.2 57 49.1
Lsat_1_v5_gn_7_15100 Lactuca sativa HOM05D000015 ORTHO05D009146 2.1e-06 55.8 57 47.4
MD10G1326200 Malus domestica HOM05D000015 ORTHO05D009146 2.1e-06 55.8 96 37.5
Cpa.g.sc152.53 Carica papaya HOM05D000015 ORTHO05D009146 2.7e-06 55.5 57 49.1
Nn1g03398 Nelumbo nucifera HOM05D000015 ORTHO05D009146 3.6e-06 55.1 57 49.1
PSO541G1228 Papaver somniferum HOM05D000015 ORTHO05D009146 4.6e-06 54.7 52 55.8
Gohir.A06G150800 Gossypium hirsutum HOM05D000015 ORTHO05D009146 6.1e-06 54.3 94 35.1
Gohir.D06G157000 Gossypium hirsutum HOM05D000015 ORTHO05D009146 6.1e-06 54.3 94 35.1
Gorai.010G183500 Gossypium raimondii HOM05D000015 ORTHO05D009146 6.1e-06 54.3 94 35.1
CiPaw.10G074200 Carya illinoinensis HOM05D000015 ORTHO05D009146 7.9e-06 53.9 94 38.3
CDE06G1972 Ceratophyllum demersum HOM05D000015 ORTHO05D003525 7.9e-06 53.9 60 43.3
COL.COLO4_31829 Corchorus olitorius HOM05D001347 ORTHO05D009146 7.9e-06 53.9 80 38.8
Haze_06854 Corylus avellana HOM05D000015 ORTHO05D009146 7.9e-06 53.9 76 40.8
FvH4_3g01420 Fragaria vesca HOM05D000015 ORTHO05D009146 7.9e-06 53.9 58 46.6
FAN21G0890 Fragaria x ananassa HOM05D001347 ORTHO05D009146 7.9e-06 53.9 58 46.6
Lsat_1_v5_gn_7_15080 Lactuca sativa HOM05D000015 ORTHO05D009146 7.9e-06 53.9 59 44.1
Lj1A1236G69 Lonicera japonica HOM05D000015 ORTHO05D009146 7.9e-06 53.9 94 37.2
Manes.17G027600 Manihot esculenta HOM05D000015 ORTHO05D009146 7.9e-06 53.9 52 50.0
Sabra11G0008100 Salix brachista HOM05D000015 ORTHO05D009146 7.9e-06 53.9 57 47.4


User provided reference genes

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