Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G1005 Fragaria x ananassa HOM05D007505 ORTHO05D009476 1.7e-73 279.3 144 100.0
FvH4_5g06310 Fragaria vesca HOM05D007505 ORTHO05D009476 8.5e-73 276.9 144 99.3
FAN08G0495 Fragaria x ananassa HOM05D007505 ORTHO05D009476 1.0e-70 270.0 144 96.5
FAN13G2123 Fragaria x ananassa HOM05D007505 ORTHO05D009476 8.8e-70 266.9 144 95.8
RcHm_v2.0_Chr7g0192551 Rosa chinensis HOM05D007505 ORTHO05D009476 9.5e-64 246.9 141 91.5
Prupe.5G165400 Prunus persica HOM05D007505 ORTHO05D009476 1.2e-42 176.8 148 68.9
MD14G1171300 Malus domestica HOM05D007505 ORTHO05D009476 1.0e-41 173.7 146 69.9
MD06G1165700 Malus domestica HOM05D007505 ORTHO05D009476 1.8e-38 162.9 138 69.6
QL10p006874 Quercus lobata HOM05D007505 ORTHO05D009476 2.4e-35 152.5 141 63.8
Haze_07589 Corylus avellana HOM05D007505 ORTHO05D009476 7.1e-35 151.0 140 59.3
Glyma.17G084500 Glycine max HOM05D007505 ORTHO05D009476 9.2e-35 150.6 146 56.8
Ciclev10022689m.g Citrus clementina HOM05D007505 ORTHO05D009476 3.5e-34 148.7 139 61.2
Cfa019221 Carpinus fangiana HOM05D007505 ORTHO05D009476 3.0e-33 145.6 140 60.0
Atru.chr9.2580 Acer truncatum HOM05D007505 ORTHO05D009476 5.1e-33 144.8 145 58.6
Cpa.g.sc159.18 Carica papaya HOM05D007505 ORTHO05D009476 8.6e-33 144.1 147 53.7
Glyma.05G041700 Glycine max HOM05D007505 ORTHO05D009476 8.6e-33 144.1 143 55.2
Cfa019219 Carpinus fangiana HOM05D007505 ORTHO05D009476 2.5e-32 142.5 140 59.3
ClCG03G003000 Citrullus lanatus HOM05D007505 ORTHO05D009476 2.5e-32 142.5 138 61.6
TWI23G0126 Tripterygium wilfordii HOM05D007505 ORTHO05D009476 3.3e-32 142.1 141 57.4
MELO3C002298.2 Cucumis melo HOM05D007505 ORTHO05D009476 5.6e-32 141.4 140 57.1
Thecc.03G026000 Theobroma cacao HOM05D007505 ORTHO05D009476 1.2e-31 140.2 143 56.6
Potri.015G084200 Populus trichocarpa HOM05D007505 ORTHO05D009476 2.1e-31 139.4 146 54.1
CiPaw.11G019500 Carya illinoinensis HOM05D007505 ORTHO05D009476 2.8e-31 139.0 143 56.6
Solyc03g112190.4 Solanum lycopersicum HOM05D002460 ORTHO05D002716 2.8e-31 139.0 138 57.2
Actinidia19362 Actinidia chinensis HOM05D007505 ORTHO05D009476 8.1e-31 137.5 143 58.0
Sopen03g031290 Solanum pennellii HOM05D007505 ORTHO05D009476 1.1e-30 137.1 138 56.5
TPR.G37551 Trifolium pratense HOM05D007505 ORTHO05D009476 4.0e-30 135.2 137 54.7
Nitab4.5_0010452g0040 Nicotiana tabacum HOM05D002460 ORTHO05D002716 5.2e-30 134.8 131 56.5
Dinv38525 Davidia involucrata HOM05D007505 ORTHO05D009476 6.8e-30 134.4 141 58.2
Psat4g060840 Pisum sativum HOM05D007505 ORTHO05D009476 6.8e-30 134.4 134 57.5
PGSC0003DMG400018186 Solanum tuberosum HOM05D007505 ORTHO05D009476 8.9e-30 134.0 138 55.1
CAN.G338.34 Capsicum annuum HOM05D007505 ORTHO05D009476 1.5e-29 133.3 139 54.7
COL.COLO4_36758 Corchorus olitorius HOM05D007505 ORTHO05D009476 1.5e-29 133.3 153 52.9
Gorai.003G115400 Gossypium raimondii HOM05D007505 ORTHO05D009476 2.0e-29 132.9 151 52.3
CSS0021026 Camellia sinensis var. sinensis HOM05D007505 ORTHO05D009476 2.6e-29 132.5 129 58.9
Gohir.A03G057100 Gossypium hirsutum HOM05D007505 ORTHO05D009476 3.4e-29 132.1 151 52.3
Gohir.D03G109300 Gossypium hirsutum HOM05D007505 ORTHO05D009476 3.4e-29 132.1 151 52.3
Lalb_Chr12g0201901 Lupinus albus HOM05D007505 ORTHO05D009476 5.8e-29 131.3 151 53.6
Sabra15G0107300 Salix brachista HOM05D007505 ORTHO05D009476 5.8e-29 131.3 146 53.4
PSO675G7842 Papaver somniferum HOM05D007505 ORTHO05D009476 9.9e-29 130.6 150 50.0
Eucgr.B00218 Eucalyptus grandis HOM05D007505 ORTHO05D009476 1.3e-28 130.2 148 56.1
TAR371G0969 Trochodendron aralioides HOM05D007505 ORTHO05D009476 1.3e-28 130.2 145 54.5
Medtr4g104870 Medicago truncatula HOM05D007505 ORTHO05D009476 2.2e-28 129.4 136 54.4
Cc04_g11490 Coffea canephora HOM05D007505 ORTHO05D009476 2.9e-28 129.0 154 50.6
CsaV3_1G008840 Cucumis sativus L. HOM05D007505 ORTHO05D009476 2.9e-28 129.0 136 56.6
PSO541G6268 Papaver somniferum HOM05D007505 ORTHO05D009476 6.4e-28 127.9 150 49.3
PGR083G2149 Punica granatum HOM05D007505 ORTHO05D009476 1.1e-27 127.1 136 54.4
arahy.Tifrunner.gnm1.ann1.33YNZL Arachis hypogaea HOM05D007505 ORTHO05D009476 1.9e-27 126.3 148 52.7
Hma1.2p1_0046F.1_g027150 Hydrangea macrophylla HOM05D007505 ORTHO05D009476 4.1e-27 125.2 143 54.5
Rhsim08G0177900 Rhododendron simsii HOM05D007505 ORTHO05D009476 4.1e-27 125.2 152 51.3
VMungo1215G0926 Vigna mungo HOM05D007505 ORTHO05D009476 4.1e-27 125.2 149 49.7
Migut.O00159 Erythranthe guttata HOM05D007505 ORTHO05D009476 1.6e-26 123.2 155 50.3
HanXRQChr02g0035811 Helianthus annuus HOM05D007505 ORTHO05D009476 3.5e-26 122.1 133 51.9
ECA247G3499 Erigeron canadensis HOM05D007505 ORTHO05D009476 4.6e-26 121.7 139 50.4
Lj4g0014699 Lotus japonicus HOM05D007505 ORTHO05D009476 6.0e-26 121.3 141 52.5
Potri.012G086000 Populus trichocarpa HOM05D007505 ORTHO05D009476 7.8e-26 120.9 146 51.4
Oeu023645.1 Olea europaea HOM05D007505 ORTHO05D009476 1.0e-25 120.6 141 51.8
vmacro19295 Vaccinium macrocarpon HOM05D007505 ORTHO05D009476 2.3e-25 119.4 152 52.0
EL10Ac5g10655 Beta vulgaris HOM05D007505 ORTHO05D009476 3.9e-25 118.6 137 49.6
CANSAT80G2368 Cannabis sativa HOM05D007505 ORTHO05D009476 3.9e-25 118.6 151 45.7
Sed0000715 Sechium edule HOM05D007505 ORTHO05D009476 3.9e-25 118.6 131 52.7
Peaxi162Scf00089g01341 Petunia axillaris HOM05D002460 ORTHO05D002716 5.1e-25 118.2 140 49.3
Manes.06G110400 Manihot esculenta HOM05D007505 ORTHO05D009476 1.5e-24 116.7 144 50.7
Nitab4.5_0001793g0050 Nicotiana tabacum HOM05D002460 ORTHO05D002716 1.9e-24 116.3 118 54.2
Aqoxy5G03745 Aquilegia oxysepala HOM05D007505 ORTHO05D009476 2.5e-24 115.9 130 53.1
AUR62028725 Chenopodium quinoa HOM05D007505 ORTHO05D009476 5.6e-24 114.8 147 49.0
AUR62008143 Chenopodium quinoa HOM05D007505 ORTHO05D009476 9.6e-24 114.0 144 50.0
Nitab4.5_0000003g0840 Nicotiana tabacum HOM05D007505 ORTHO05D009476 9.6e-24 114.0 144 50.0
SGA_v2.0_scaffold90G27839 Striga asiatica HOM05D007505 ORTHO05D009476 1.2e-23 113.6 141 53.9
Lsat_1_v5_gn_1_27760 Lactuca sativa HOM05D007505 ORTHO05D009476 4.7e-23 111.7 138 48.6
Oeu040858.1 Olea europaea HOM05D007505 ORTHO05D009476 1.8e-22 109.8 141 50.4
TAR629G2155 Trochodendron aralioides HOM05D001124 ORTHO05D001004 1.8e-22 109.8 121 54.5
Duzib205G0367 Durio zibethinus HOM05D007505 ORTHO05D009476 2.4e-22 109.4 106 57.5
Nitab4.5_0008713g0030 Nicotiana tabacum HOM05D007505 ORTHO05D009476 5.2e-22 108.2 139 50.4
DCAR_021591 Daucus carota HOM05D007505 ORTHO05D009476 9.0e-22 107.5 138 50.7
Potri.012G086300 Populus trichocarpa HOM05D007505 ORTHO05D009476 2.0e-21 106.3 121 53.7
SalBow5G2951 Salvia bowleyana HOM05D007505 ORTHO05D009476 4.4e-21 105.1 127 49.6
MBI16_g31776_MAGBIO Magnolia biondii HOM05D007505 ORTHO05D009476 5.8e-21 104.8 116 50.0
Phvul.003G205200 Phaseolus vulgaris HOM05D007505 ORTHO05D009476 9.9e-21 104.0 130 46.9
Sc04g0001500 Simmondsia chinensis HOM05D007505 ORTHO05D009476 1.1e-19 100.5 109 55.0
Nn3g16691 Nelumbo nucifera HOM05D007505 ORTHO05D009476 1.9e-19 99.8 104 56.7
Sabra12G0061800 Salix brachista HOM05D007505 ORTHO05D009476 1.9e-19 99.8 120 51.7
THA.LOC104825178 Tarenaya hassleriana HOM05D007505 ORTHO05D009476 7.1e-19 97.8 148 43.2
THA.LOC104800396 Tarenaya hassleriana HOM05D007505 ORTHO05D009476 4.6e-18 95.1 147 42.2
THA.LOC104800397 Tarenaya hassleriana HOM05D007505 ORTHO05D009476 4.6e-18 95.1 147 42.2
Nn4g22591 Nelumbo nucifera HOM05D007505 ORTHO05D009476 1.0e-17 94.0 129 48.1
Rhsim12G0168000 Rhododendron simsii HOM05D007505 ORTHO05D009476 1.5e-16 90.1 130 48.5
AL7G28500 Arabidopsis lyrata HOM05D007505 ORTHO05D009476 2.5e-16 89.4 125 44.8
Thhalv10026466m.g Eutrema salsugineum HOM05D007505 ORTHO05D009476 2.5e-16 89.4 127 43.3
BcaNung07358 Brassica carinata HOM05D007505 ORTHO05D009476 5.6e-16 88.2 133 39.1
C01p20030 Brassica napus HOM05D006209 ORTHO05D007645 5.6e-16 88.2 122 41.8
ATR0824G199 Amborella trichopoda HOM05D007505 ORTHO05D009476 7.3e-16 87.8 130 46.9
BcaC09g50839 Brassica carinata HOM05D007505 ORTHO05D009476 7.3e-16 87.8 122 41.8
A01p16040 Brassica napus HOM05D006209 ORTHO05D007645 7.3e-16 87.8 125 40.8
BraA01t01538Z Brassica rapa HOM05D007505 ORTHO05D009476 7.3e-16 87.8 122 41.8
Carub.0007s1636 Capsella rubella HOM05D007505 ORTHO05D009476 7.3e-16 87.8 126 42.9
Zm00001eb246040 Zea mays HOM05D007505 ORTHO05D009476 7.3e-16 87.8 143 44.1
AT4G24700 Arabidopsis thaliana HOM05D007505 ORTHO05D009476 9.6e-16 87.4 128 43.0
Duzib068G0261 Durio zibethinus HOM05D007505 ORTHO05D009476 1.3e-15 87.0 72 58.3
BolC1t01930H Brassica oleracea HOM05D006209 ORTHO05D007645 1.6e-15 86.7 122 41.8
Dinv20598 Davidia involucrata HOM05D007505 ORTHO05D009476 2.8e-15 85.9 80 62.5
BolC7t45867H Brassica oleracea HOM05D000464 ORTHO05D000408 2.4e-14 82.8 125 38.4
BraA03t14621Z Brassica rapa HOM05D000464 ORTHO05D000408 2.4e-14 82.8 129 38.0
unitig_61.g26472 Utricularia gibba HOM05D007505 ORTHO05D009476 4.0e-14 82.0 134 42.5
Hma1.2p1_1092F.1_g255960 Hydrangea macrophylla HOM05D007505 ORTHO05D009476 9.0e-14 80.9 80 52.5
A03p55480 Brassica napus HOM05D007505 ORTHO05D009476 1.5e-13 80.1 125 36.8
Os02g0595200 Oryza sativa ssp. japonica HOM05D007505 ORTHO05D009476 2.9e-12 75.9 172 36.6
CARHR232080 Cardamine hirsuta HOM05D007505 ORTHO05D009476 1.4e-11 73.6 127 39.4
HPP92_004606 Vanilla planifolia HOM05D007505 ORTHO05D009476 2.3e-09 66.2 94 44.7
Sed0006942 Sechium edule HOM05D007505 ORTHO05D009476 3.3e-08 62.4 128 43.8
Duzib268G1603 Durio zibethinus HOM05D008015 ORTHO05D009180 1.4e-06 57.0 94 43.6
BcaC06g32867 Brassica carinata HOM05D007505 ORTHO05D009476 4.0e-06 55.5 113 35.4


User provided reference genes

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