Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G0926 Fragaria x ananassa HOM05D004289 ORTHO05D005141 7.7e-46 186.8 96 100.0
FAN10G0807 Fragaria x ananassa HOM05D004289 ORTHO05D005141 8.3e-40 166.8 94 93.6
FvH4_5g28260 Fragaria vesca HOM05D004289 ORTHO05D005141 2.0e-30 135.6 69 100.0
RcHm_v2.0_Chr7g0220501 Rosa chinensis HOM05D004289 ORTHO05D005141 4.3e-28 127.9 101 72.3
MD08G1244000 Malus domestica HOM05D004289 ORTHO05D005141 9.8e-25 116.7 104 66.3
Prupe.1G581300 Prunus persica HOM05D004289 ORTHO05D005141 1.3e-24 116.3 104 66.3
MD15G1438300 Malus domestica HOM05D004289 ORTHO05D005141 2.2e-24 115.5 103 66.0
Duzib052G0484 Durio zibethinus HOM05D004289 ORTHO05D005141 1.3e-21 106.3 100 56.0
Thecc.02G016600 Theobroma cacao HOM05D004289 ORTHO05D005141 1.7e-21 105.9 101 58.4
Gohir.A03G215700 Gossypium hirsutum HOM05D004289 ORTHO05D005141 8.6e-21 103.6 100 57.0
Gohir.D02G237200 Gossypium hirsutum HOM05D004289 ORTHO05D005141 7.3e-20 100.5 100 56.0
Gorai.005G265800 Gossypium raimondii HOM05D004289 ORTHO05D005141 7.3e-20 100.5 100 56.0
Duzib248G0764 Durio zibethinus HOM05D004289 ORTHO05D005141 4.7e-19 97.8 101 55.4
GSVIVG01023230001 Vitis vinifera HOM05D004289 ORTHO05D005141 4.7e-19 97.8 90 61.1
CARHR054450 Cardamine hirsuta HOM05D004289 ORTHO05D005141 1.8e-18 95.9 100 55.0
COL.COLO4_17708 Corchorus olitorius HOM05D004289 ORTHO05D005141 2.3e-18 95.5 101 52.5
Sabra01G0171700 Salix brachista HOM05D004289 ORTHO05D005141 3.1e-18 95.1 104 52.9
Lsat_1_v5_gn_9_119620 Lactuca sativa HOM05D004289 ORTHO05D005141 6.8e-18 94.0 104 53.8
ECA236G0617 Erigeron canadensis HOM05D004289 ORTHO05D005141 1.2e-17 93.2 98 57.1
Manes.10G116200 Manihot esculenta HOM05D004289 ORTHO05D005141 1.2e-17 93.2 100 53.0
CSS0038337 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 1.5e-17 92.8 102 52.9
SGA_v2.0_scaffold131G34372 Striga asiatica HOM05D004289 ORTHO05D005141 1.5e-17 92.8 100 52.0
Carub.0001s0900 Capsella rubella HOM05D004289 ORTHO05D005141 7.6e-17 90.5 97 50.5
Migut.B00750 Erythranthe guttata HOM05D004289 ORTHO05D005141 7.6e-17 90.5 101 56.4
Potri.004G226100 Populus trichocarpa HOM05D004289 ORTHO05D005141 9.9e-17 90.1 104 51.0
Lsat_1_v5_gn_5_104580 Lactuca sativa HOM05D004289 ORTHO05D005141 1.3e-16 89.7 104 50.0
Carub.0002s0680 Capsella rubella HOM05D004289 ORTHO05D005141 2.2e-16 89.0 98 54.1
CARHR009620 Cardamine hirsuta HOM05D004289 ORTHO05D005141 3.7e-16 88.2 91 51.6
Ciclev10003782m.g Citrus clementina HOM05D004289 ORTHO05D005141 3.7e-16 88.2 60 70.0
C08p13100 Brassica napus HOM05D004289 ORTHO05D005141 4.9e-16 87.8 100 49.0
HanXRQChr06g0182751 Helianthus annuus HOM05D004289 ORTHO05D005141 4.9e-16 87.8 101 50.5
THA.LOC104823700 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 4.9e-16 87.8 91 52.7
AL1G20190 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 6.4e-16 87.4 91 52.7
C05p07700 Brassica napus HOM05D004289 ORTHO05D005141 6.4e-16 87.4 100 48.0
Thhalv10009166m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 6.4e-16 87.4 91 52.7
AT1G09645 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 8.3e-16 87.0 91 51.6
BcaB03g13311 Brassica carinata HOM05D004289 ORTHO05D005141 8.3e-16 87.0 104 47.1
CSS0038950 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 8.3e-16 87.0 103 50.5
MELO3C016488.2 Cucumis melo HOM05D004289 ORTHO05D005141 8.3e-16 87.0 93 50.5
Manes.07G025900 Manihot esculenta HOM05D004289 ORTHO05D005141 8.3e-16 87.0 94 54.3
Aa31LG1G5340 Aethionema arabicum HOM05D004289 ORTHO05D005141 1.1e-15 86.7 91 52.7
BolC8t48938H Brassica oleracea HOM05D002143 ORTHO05D002260 1.4e-15 86.3 97 49.5
THA.LOC104816824 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 1.4e-15 86.3 91 52.7
Actinidia38989 Actinidia chinensis HOM05D004289 ORTHO05D005141 1.9e-15 85.9 104 51.0
BraA06t23844Z Brassica rapa HOM05D004289 ORTHO05D005141 1.9e-15 85.9 98 50.0
EL10Ac6g14140 Beta vulgaris HOM05D004289 ORTHO05D005141 2.4e-15 85.5 65 64.6
BcaC07g41867 Brassica carinata HOM05D004289 ORTHO05D005141 2.4e-15 85.5 91 51.6
C08p49340 Brassica napus HOM05D004289 ORTHO05D005141 2.4e-15 85.5 91 51.6
MBI06_g06694_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 3.2e-15 85.1 95 50.5
VMungo0540G0867 Vigna mungo HOM05D004289 ORTHO05D005141 3.2e-15 85.1 102 54.9
Sp1g08260 Schrenkiella parvula HOM05D004289 ORTHO05D005141 4.1e-15 84.7 91 50.5
A06p06330 Brassica napus HOM05D004289 ORTHO05D005141 5.4e-15 84.3 92 50.0
Sp2g05730 Schrenkiella parvula HOM05D004289 ORTHO05D005141 7.1e-15 84.0 91 52.7
BolC5t29521H Brassica oleracea HOM05D004289 ORTHO05D005141 9.2e-15 83.6 63 61.9
unitig_748.g7732 Utricularia gibba HOM05D004289 ORTHO05D005141 9.2e-15 83.6 100 51.0
Nitab4.5_0005169g0070 Nicotiana tabacum HOM05D004289 ORTHO05D005141 1.6e-14 82.8 66 65.2
TAR628G0462 Trochodendron aralioides HOM05D004289 ORTHO05D005141 1.6e-14 82.8 102 46.1
PSO017G2658 Papaver somniferum HOM05D004289 ORTHO05D005141 2.1e-14 82.4 106 48.1
QL09p003196 Quercus lobata HOM05D004289 ORTHO05D005141 2.1e-14 82.4 92 51.1
QL09p004791 Quercus lobata HOM05D004289 ORTHO05D005141 2.1e-14 82.4 92 51.1
Atru.chr6.550 Acer truncatum HOM05D004289 ORTHO05D005141 3.5e-14 81.6 55 70.9
HanXRQChr03g0067991 Helianthus annuus HOM05D004289 ORTHO05D005141 3.5e-14 81.6 81 51.9
Ah.02g128340 Amaranthus hybridus HOM05D004289 ORTHO05D005141 4.6e-14 81.3 101 49.5
BolC8t52471H Brassica oleracea HOM05D004289 ORTHO05D005141 4.6e-14 81.3 63 63.5
BraA08t35355Z Brassica rapa HOM05D002143 ORTHO05D002260 4.6e-14 81.3 63 58.7
AUR62028456 Chenopodium quinoa HOM05D004289 ORTHO05D005141 4.6e-14 81.3 102 47.1
Nitab4.5_0029023g0010 Nicotiana tabacum HOM05D004289 ORTHO05D005141 4.6e-14 81.3 92 46.7
unitig_32.g11200 Utricularia gibba HOM05D004289 ORTHO05D005141 4.6e-14 81.3 84 54.8
Migut.C01335 Erythranthe guttata HOM05D004289 ORTHO05D005141 6.0e-14 80.9 94 51.1
Lj3g0023226 Lotus japonicus HOM05D004289 ORTHO05D005141 6.0e-14 80.9 93 47.3
Phvul.011G000300 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 6.0e-14 80.9 93 48.4
MSTRG.20324 Avicennia marina HOM05D004289 ORTHO05D005141 7.8e-14 80.5 102 52.9
CiPaw.04G012500 Carya illinoinensis HOM05D004289 ORTHO05D005141 7.8e-14 80.5 93 54.8
AUR62042238 Chenopodium quinoa HOM05D004289 ORTHO05D005141 7.8e-14 80.5 65 63.1
MBI17_g24966_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 7.8e-14 80.5 75 62.7
Potri.003G005400 Populus trichocarpa HOM05D004289 ORTHO05D005141 7.8e-14 80.5 95 48.4
Aqoxy5G00854 Aquilegia oxysepala HOM05D004289 ORTHO05D005141 1.0e-13 80.1 92 55.4
Peaxi162Scf00688g00334 Petunia axillaris HOM05D004289 ORTHO05D005141 1.0e-13 80.1 92 44.6
SalBow7G0958 Salvia bowleyana HOM05D004289 ORTHO05D005141 1.0e-13 80.1 70 60.0
Thhalv10023770m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 1.7e-13 79.3 89 51.7
Medtr4g032200 Medicago truncatula HOM05D004289 ORTHO05D005141 1.7e-13 79.3 94 50.0
TAR381G0514 Trochodendron aralioides HOM05D004289 ORTHO05D005141 1.7e-13 79.3 93 48.4
AL1G67510 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 3.9e-13 78.2 92 51.1
AT1G57765 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 5.1e-13 77.8 91 49.5
Glyma.08G237900 Glycine max HOM05D004289 ORTHO05D005141 5.1e-13 77.8 92 47.8
MD08G1216400 Malus domestica HOM05D004289 ORTHO05D005141 5.1e-13 77.8 87 55.2
PSO170G0294 Papaver somniferum HOM05D004289 ORTHO05D005141 5.1e-13 77.8 106 45.3
TWI14G0848 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 5.1e-13 77.8 92 50.0
Prupe.1G549500 Prunus persica HOM05D004289 ORTHO05D005141 6.6e-13 77.4 72 55.6
TPR.G34161 Trifolium pratense HOM05D004289 ORTHO05D005141 6.6e-13 77.4 94 46.8
vmacro19856 Vaccinium macrocarpon HOM05D004289 ORTHO05D005141 8.6e-13 77.0 92 54.3
VMungo0540G1552 Vigna mungo HOM05D004289 ORTHO05D005141 8.6e-13 77.0 65 56.9
Sopen11g012540 Solanum pennellii HOM05D004289 ORTHO05D005141 1.1e-12 76.6 81 48.1
GSVIVG01025943001 Vitis vinifera HOM05D004289 ORTHO05D005141 1.1e-12 76.6 94 50.0
CiPaw.03G018600 Carya illinoinensis HOM05D004289 ORTHO05D005141 1.5e-12 76.3 92 48.9
Eucgr.I02780 Eucalyptus grandis HOM05D004289 ORTHO05D005141 1.5e-12 76.3 93 48.4
PGSC0003DMG400025523 Solanum tuberosum HOM05D004289 ORTHO05D005141 1.5e-12 76.3 81 48.1
Gohir.D04G177000 Gossypium hirsutum HOM05D004289 ORTHO05D005141 1.9e-12 75.9 99 47.5
Gorai.012G169900 Gossypium raimondii HOM05D004289 ORTHO05D005141 1.9e-12 75.9 99 47.5
MD05G1210300 Malus domestica HOM05D004289 ORTHO05D005141 2.5e-12 75.5 87 52.9
Sc16g0004250 Simmondsia chinensis HOM05D004289 ORTHO05D005141 2.5e-12 75.5 59 64.4
HPP92_002618 Vanilla planifolia HOM05D004289 ORTHO05D005141 3.3e-12 75.1 91 47.3
Haze_10030 Corylus avellana HOM05D004289 ORTHO05D005141 4.3e-12 74.7 61 62.3
MBI18_g30384_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 4.3e-12 74.7 75 56.0
Gohir.A04G133900 Gossypium hirsutum HOM05D004289 ORTHO05D005141 5.6e-12 74.3 99 46.5
Nn5g27488 Nelumbo nucifera HOM05D004289 ORTHO05D005141 5.6e-12 74.3 102 42.2
TWI23G1156 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 5.6e-12 74.3 91 48.4
HPP92_002677 Vanilla planifolia HOM05D004289 ORTHO05D005141 5.6e-12 74.3 91 46.2
QL02p100957 Quercus lobata HOM05D004289 ORTHO05D005141 9.6e-12 73.6 93 47.3
Nitab4.5_0000016g0420 Nicotiana tabacum HOM05D004289 ORTHO05D005141 1.2e-11 73.2 62 54.8
Oeu058640.2 Olea europaea HOM05D004289 ORTHO05D005141 1.2e-11 73.2 83 54.2
CsaV3_5G040360 Cucumis sativus L. HOM05D004289 ORTHO05D005141 2.1e-11 72.4 68 55.9
MD15G1403500 Malus domestica HOM05D004289 ORTHO05D005141 2.1e-11 72.4 90 50.0
Sed0006384 Sechium edule HOM05D004289 ORTHO05D005141 2.1e-11 72.4 57 66.7
FAN13G3078 Fragaria x ananassa HOM05D004289 ORTHO05D005141 2.8e-11 72.0 83 51.8
RcHm_v2.0_Chr7g0229261 Rosa chinensis HOM05D004289 ORTHO05D005141 2.8e-11 72.0 85 52.9
Aa31LG2G11220 Aethionema arabicum HOM05D004289 ORTHO05D005141 4.7e-11 71.2 93 49.5
ClCG08G000420 Citrullus lanatus HOM05D004289 ORTHO05D005141 6.2e-11 70.9 93 47.3
Psat7g226600 Pisum sativum HOM05D004289 ORTHO05D005141 8.1e-11 70.5 91 46.2
MELO3C022208.2 Cucumis melo HOM05D004289 ORTHO05D005141 1.1e-10 70.1 68 55.9
CDE08G0453 Ceratophyllum demersum HOM05D004289 ORTHO05D005141 1.4e-10 69.7 88 43.2
FvH4_5g32580 Fragaria vesca HOM05D004289 ORTHO05D005141 1.8e-10 69.3 83 49.4
Sabra19G0088300 Salix brachista HOM05D004289 ORTHO05D005141 1.8e-10 69.3 93 43.0
Phvul.006G220000 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 2.4e-10 68.9 93 48.4
ATR1136G135 Amborella trichopoda HOM05D004289 ORTHO05D005141 3.1e-10 68.6 54 64.8
Cc10_g09380 Coffea canephora HOM05D004289 ORTHO05D005141 4.0e-10 68.2 95 44.2
TPR.G2097 Trifolium pratense HOM05D004289 ORTHO05D005141 4.0e-10 68.2 44 75.0
Haze_13910 Corylus avellana HOM05D002143 ORTHO05D002260 5.2e-10 67.8 89 43.8
Zm00001eb288300 Zea mays HOM05D004289 ORTHO05D005141 6.8e-10 67.4 92 45.7
Potri.019G077100 Populus trichocarpa HOM05D004289 ORTHO05D005141 8.9e-10 67.0 91 44.0
RcHm_v2.0_Chr3g0495521 Rosa chinensis HOM05D004289 ORTHO05D005141 1.2e-09 66.6 65 50.8
FAN04G1595 Fragaria x ananassa HOM05D004289 ORTHO05D005141 2.0e-09 65.9 78 50.0
Os05g0419600 Oryza sativa ssp. japonica HOM05D004289 ORTHO05D005141 2.0e-09 65.9 90 45.6
Oeu048223.2 Olea europaea HOM05D004289 ORTHO05D005141 2.6e-09 65.5 95 42.1
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 3.4e-09 65.1 64 48.4
SalBow7G1625 Salvia bowleyana HOM05D004289 ORTHO05D005141 4.4e-09 64.7 34 88.2
arahy.Tifrunner.gnm1.ann1.291MDK Arachis hypogaea HOM05D004289 ORTHO05D005141 5.8e-09 64.3 88 40.9
RcHm_v2.0_Chr5g0063911 Rosa chinensis HOM05D004289 ORTHO05D005141 5.8e-09 64.3 63 55.6
Cfa008122 Carpinus fangiana HOM05D000042 ORTHO05D000028 1.3e-08 63.2 55 60.0
THA.LOC104820335 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 1.3e-08 63.2 91 40.7
CiPaw.05G003600 Carya illinoinensis HOM05D004289 ORTHO05D005141 2.9e-08 62.0 61 52.5
Lalb_Chr18g0061091 Lupinus albus HOM05D004289 ORTHO05D005141 4.9e-08 61.2 91 42.9
arahy.Tifrunner.gnm1.ann1.2Z03QX Arachis hypogaea HOM05D004289 ORTHO05D005141 6.4e-08 60.8 91 45.1
arahy.Tifrunner.gnm1.ann1.M3EZX1 Arachis hypogaea HOM05D004289 ORTHO05D005141 6.4e-08 60.8 85 41.2
FAN18G1872 Fragaria x ananassa HOM05D004289 ORTHO05D005141 8.4e-08 60.5 77 48.1
Glyma.12G165600 Glycine max HOM05D004289 ORTHO05D005141 8.4e-08 60.5 96 43.8
Zm00001eb349170 Zea mays HOM05D004289 ORTHO05D005141 1.4e-07 59.7 91 44.0
Sed0020386 Sechium edule HOM05D004289 ORTHO05D005141 3.2e-07 58.5 68 47.1
Glyma.16G002000 Glycine max HOM05D004289 ORTHO05D005141 5.4e-07 57.8 89 42.7
PGR042G0739 Punica granatum HOM05D004289 ORTHO05D005141 5.4e-07 57.8 86 43.0
Cc02_g23340 Coffea canephora HOM05D004289 ORTHO05D005141 7.1e-07 57.4 105 42.9
Lalb_Chr15g0090801 Lupinus albus HOM05D004289 ORTHO05D005141 2.1e-06 55.8 91 42.9


User provided reference genes

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